Cp4.1LG05g13330 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g13330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 9358707 .. 9362389 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGCCTGGCACGTGAGTGTTTAGGCCCATCTCAAAAAGAAAATAATCTGACATGAAAATAAAATTTAATAAACAGTGGCAGTGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGGCACCGTCCCTGTCACTGGTACTCTCCTCCCGTCTGAGCGATCGTGTTTCAATCTTAATGAATTAACGATTTGAACTGTTCTTCTTTCTTCTCAATTGCCTCAAGTAGTTTCAGTTTCCTCTCCGATGTTTTTAGCTTATGATTTTGCGAATTTTACTTTCTTCTCGAATATGGAAAGTTTAGGTCTCTCAATTACTTGTACAAATAAACGAGATAGTTTTTTATATCTTTGTGTTATCGGTATATTCGAGAAAATTGAGGTTCGTCCATTTCTGTATAGCCGCGATTATATCTCTCGAAGGATCGCGATTCAATCTCATTCTACTTTTGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAACATTACATTATGGACAATGAATGGCTTCAGTTAATGTATTGTGCTGGACAACAGTGGGGGTACCTGTTTATGTGAGAGACACTTTCTTTGGAGAGTAGGTTTGAATTTGTTTTTTTGATGGATATGTTACTGCATCCACCACGTTACAGATGTTGGTTAGACAGTATGAAAAGGGCCATGGAAAATTGGTATGGAAAAGAATTAAAAGCTGATTATGATCCAACTAACTCTATGCTAGTTTTGAAGACAACAGGCTGCAGATCCATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCAACCAAAATTGATGATACAGGAACCGTGCCAAGTATCGAAATTTGGGGATGATCATAAAGCACATGCGGTTAGTTGAGTTGAAAGCTAATTGCAGCTATCAATTGTTTGAATATCTGGGAATAATTTGCAGACATATATTATCAGTTTTCCTTCTCAATATGTATTGAATCGGTGGACTAGAAATGACAGAAATGGAGATGCAATAGATGACCATAATTCTGAATTTCCTATTGAATCTAGAGATTCTTTGACTGTTAGGTACAATAATCTTCCTCAAGAAGCAATCAAGTGTAACAGTTCAACCTTACCGCTAGCAGATATTAACCGTTTAAGCCCGTTATATATCACCGTCCTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTATCCTCTCCAACCGTTGTGGGATCTCACATCAAATGTGTTGAGGAAGGAGTAAAGTCAATTCATATTCATAACGTGGCTATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGTTAGTCTCTTTAATTTGCAGTCTTAAAATCACTGAAATATATCATTATTTATTGATGATCCTCCTCCTCTTCCCGTGAGTGGAGTCCAGAAATTGTGCATTGTGCTTGAAAGACATCTAAAGCATTAGGGTAAAACACTAAATTTTTGTAACGGCCAGTAGATATTGTCCTCTCTGGACTTTTCCTTTCGGGCTTCCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACTCTTATAAGGTGTTTCGTTCTCCTCCCCCACCAATGCGGGATATCACAATCCACCCCCTTCAGGGCCCAGCGTCCTTACTGGCACACTGCCTCGTGTCTACCCCCTTTCGGGGAAGAGCCTCCTCGCTGGCATATCACCCAGTGTCTGGCTCTGATACCATTTGTAACGGCCCAAGCCCACCGCTAGCAGATATTGTCATTTTTTTGGCTTTCCTTTTTGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTACTAGGGAAAGATTTCCACACTCTTATAAAGGATGTTTCGTTCTCCTCCCCAACCAACCAATGTTGTTTTAGATTGAGTGGTAGGCTTTACTTTTGAATCAATTGAACACGGAGAGTTGGAAGATTCATTAGCTAATGTCAATAATAACGCTTAGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGTATGCCGGTTTTTAACTTAATTATTTCTGAACTTGACTGTTCTTTGATGCATCTGTTGTGCTGTATATGATGAATTGTCAAATAGATAATGCTCGTGCTTGATATCGAAGCGAGTCGATAGATTTGTCAAGGCTTCAGTTAATTAGATTCAGGTTGGTAGCGGTCATGTGGTCGACTTGTTGGGTGAATTAAATTCGATGAATTGTCCAAATACGAGCCAACTGTTCGTCTCTGCAGTTTTCATATCTACTTTTCTAGTGAGATTGAAAAGAGAAAAGGCTTGAAATAACCTATCATCAATTTTGTGGATGTAACATTTGAGAAGATAATGAAGTTTTCAGGACATAACGTGCTTTCTTATTTGTTCTCTGTTTCTGTTGGTTCTTTTCCCAGGAATAGAAGGAGAAGAAAATTCATGATCTTGGAAAAAATTGATCAACGTTGTGAAGTGTATAGAGCAAATCTCCTACCTGTTCTTAGAGACGTGGAAGAGCAGAAGTTGAATCTATCAGTGATGGTCCAAAATGGGAGGAGCACAAACCCACCGCTAACCGATATTATCCGTTTTGGCCCGTTACATATCGCCGTCAGCCTCACGATTTTTAAACACGTCTACTAGAGAGAGGTGGTTTTCACATCCTTACAAAGAATGTTTCGTTTCCCTCTCCAATAGATGTAGGATCACACAATCCATTACCTTGGAGGTCAATGTTGTCGTTGGAACACCACCTGGTGTTCGACTCTGATATTATTTGTAACAGCCCAAGCTTACTGCCAACAGATATTGTTCTCTTTGGAGTTTCCTTCAAAGTTCTAAAACACATCTGTTAGGTAGAGGTTTCCATACCCTTAAGCATTGTTTTATTTCTCCCTCCAACTGACTTAGAGCTCACTAATTATGATTGTCATCATCTCTTGAGTTGATACCATTCATCCACCGTGTTCATCTTATTTAATGGCTCGTCTTTCCAAAGAATAAGAATGACGAATCAACAGAACAAGTGACCGGTGGCATCGAAAGGAACGGTCAGGGTGTCTACTGTCATGTAAGTGCTCTAAATTCTAAATGTTGTTGTGTAGAAAAAAATGCTATACCTTAACCTATTCGAGTGTGACAAAGAGGTGGTTGGATCTAGGATGAAGCATCATGAACATCTGGCATTAAAGCCTGCCTTTGGACGCTATTGACATCCTGATGACTCGACAACTTCTTTGGGTGATTCTTGTGAAGTAAATACAATGTATTGTTAAAAGTTCTTCAATTTTGTAGGAATATCATTTAATATTAGTTAGGTCCAATGAAAAAAAGCTCTATTTTTCTCGATTGCATGGCTCTGGTACCATATGTAACCGCTTAAGCTCACCACTAGTAAATATTATCCGTTTCGGCCCATTATGTATCGTCGTTTTGGCCCGTTATGTATTGTCGTCAGTCTCACGGTTTTAA

mRNA sequence

TGGGCCTGGCACGTGAGTGTTTAGGCCCATCTCAAAAAGAAAATAATCTGACATGAAAATAAAATTTAATAAACAGTGGCAGTGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGGCACCGTCCCTGTCACTGCCGCGATTATATCTCTCGAAGGATCGCGATTCAATCTCATTCTACTTTTGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAACATTACATTATGGACAATGAATGGCTTCAGTTAATGTATTGTGCTGGACAACAGTGGGGGTACCTGTTTATGTGAGAGACACTTTCTTTGGAGAGTAGGTTTGAATTTGTTTTTTTGATGGATATGTTACTGCATCCACCACGTTACAGATGTTGGTTAGACAGTATGAAAAGGGCCATGGAAAATTGGTATGGAAAAGAATTAAAAGCTGATTATGATCCAACTAACTCTATGCTAGTTTTGAAGACAACAGGCTGCAGATCCATATTCAAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCAACCAAAATTGATGATACAGGAACCGTGCCAAGTATCGAAATTTGGGGATGATCATAAAGCACATGCGGTTAGTTGAGTTGAAAGCTAATTGCAGCTATCAATTGTTTGAATATCTGGGAATAATTTGCAGACATATATTATCAGTTTTCCTTCTCAATATGTATTGAATCGGTGGACTAGAAATGACAGAAATGGAGATGCAATAGATGACCATAATTCTGAATTTCCTATTGAATCTAGAGATTCTTTGACTGTTAGGTACAATAATCTTCCTCAAGAAGCAATCAAGTGTAACAGTTCAACCTTACCGCTAGCAGATATTAACCGTTTAAGCCCGTTATATATCACCGTCCTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTATCCTCTCCAACCGTTGTGGGATCTCACATCAAATGTGTTGAGGAAGGAGTAAAGTCAATTCATATTCATAACGTGGCTATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGAATAGAAGGAGAAGAAAATTCATGATCTTGGAAAAAATTGATCAACGTTGTGAAGTGTATAGAGCAAATCTCCTACCTGTTCTTAGAGACGTGGAAGAGCAGAAGTTGAATCTATCAGTGATGGTCCAAAATGGGAGGAGCACAAACCCACCGCTAACCGATATTATCCGTTTTGGCCCGTTACATATCGCCGTCAGCCTCACGATTTTTAAACACGTCTACTAGAGAGAGGTGGTTTTCACATCCTTACAAAGAATGTTTCGTTTCCCTCTCCAATAGATGTAGGATCACACAATCCATTACCTTGGAGGTCAATGTTGTCGTTGGAACACCACCTGGTGTTCGACTCTGATATTATTTGTAACAGCCCAAGCTTACTGCCAACAGATATTGTTCTCTTTGGAGTTTCCTTCAAAGTTCTAAAACACATCTGTTAGGTAGAGGTTTCCATACCCTTAAGCATTGTTTTATTTCTCCCTCCAACTGACTTAGAGCTCACTAATTATGATTGTCATCATCTCTTGAGTTGATACCATTCATCCACCGTGTTCATCTTATTTAATGGCTCGTCTTTCCAAAGAATAAGAATGACGAATCAACAGAACAAGTGACCGGTGGCATCGAAAGGAACGGTCAGGGTGTCTACTGTCATGATGAAGCATCATGAACATCTGGCATTAAAGCCTGCCTTTGGACGCTATTGACATCCTGATGACTCGACAACTTCTTTGGGTGATTCTTGTGAAGTAAATACAATGTATTGTTAAAAGTTCTTCAATTTTGTAGGAATATCATTTAATATTAGTTAGGTCCAATGAAAAAAAGCTCTATTTTTCTCGATTGCATGGCTCTGGTACCATATGTAACCGCTTAAGCTCACCACTAGTAAATATTATCCGTTTCGGCCCATTATGTATCGTCGTTTTGGCCCGTTATGTATTGTCGTCAGTCTCACGGTTTTAA

Coding sequence (CDS)

ATGGATATGGATGCCTTAAAAGAGGCCTCCAGAAAGGTTGCTGCTGTGAAGAATCGTGGCCCTAGAGCTTCGAATGGTGATATCATGGCCAATGGAGTTGTTGATCAATGGTTGCAACAGAAGAGGATCAGGCAGCAACCTATGGATCAGTGGGGCTTGGGCCACATAGAACTTACTGAGTTTTTCTTGTCCTATACCTGTACTTTGGTTGGATGGCTTTCATTGTCTATACACTTTCAGATAGGAATAGAAGGAGAAGAAAATTCATGA

Protein sequence

MDMDALKEASRKVAAVKNRGPRASNGDIMANGVVDQWLQQKRIRQQPMDQWGLGHIELTEFFLSYTCTLVGWLSLSIHFQIGIEGEENS
Homology
[Close]
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match: gi|659094618|ref|XP_008448155.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 3   MDALKEASRKVAAVKNRGPRASNGDIMANGVV 35
           M+ALKEASRKVAAVKNRGP A+NGDIMANGVV
Sbjct: 447 MEALKEASRKVAAVKNRGPGATNGDIMANGVV 478

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g13330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13330 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g13330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094618|ref|XP_008448155.1|5.1e-0690.63PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g13330.1Cp4.1LG05g13330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g13330CsaV3_6G009980Cucumber (Chinese Long) v3cpecucB0925
Cp4.1LG05g13330BhiUN189G29Wax gourdcpewgoB0942
Cp4.1LG05g13330Carg16127Silver-seed gourdcarcpeB0488
Cp4.1LG05g13330Carg19776Silver-seed gourdcarcpeB1194
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g13330Cucumber (Gy14) v2cgybcpeB850
Cp4.1LG05g13330Melon (DHL92) v3.6.1cpemedB789
Cp4.1LG05g13330Wax gourdcpewgoB0934
Cp4.1LG05g13330Wax gourdcpewgoB0963
Cp4.1LG05g13330Cucurbita pepo (Zucchini)cpecpeB280
Cp4.1LG05g13330Cucurbita pepo (Zucchini)cpecpeB495
Cp4.1LG05g13330Cucumber (Gy14) v1cgycpeB0210
Cp4.1LG05g13330Cucumber (Gy14) v1cgycpeB0304
Cp4.1LG05g13330Cucurbita maxima (Rimu)cmacpeB552
Cp4.1LG05g13330Cucurbita maxima (Rimu)cmacpeB579
Cp4.1LG05g13330Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g13330Cucurbita moschata (Rifu)cmocpeB135
Cp4.1LG05g13330Cucurbita moschata (Rifu)cmocpeB528
Cp4.1LG05g13330Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g13330Wild cucumber (PI 183967)cpecpiB748
Cp4.1LG05g13330Cucumber (Chinese Long) v2cpecuB746
Cp4.1LG05g13330Bottle gourd (USVL1VR-Ls)cpelsiB603
Cp4.1LG05g13330Bottle gourd (USVL1VR-Ls)cpelsiB607
Cp4.1LG05g13330Watermelon (Charleston Gray)cpewcgB649
Cp4.1LG05g13330Watermelon (Charleston Gray)cpewcgB652
Cp4.1LG05g13330Watermelon (97103) v1cpewmB737
Cp4.1LG05g13330Melon (DHL92) v3.5.1cpemeB659