Cp4.1LG05g10720.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g10720.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RING-H2 finger protein ATL78
Location	Cp4.1LG05 : 7091261 .. 7091890 (+)
Sequence length	630

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTCAATTCACTTCCATTCATGGACAGCAAGACTTCCATTATTCAAGAAAGCTCTTCACCGCTGCTGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGTTGGCGGCGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCTTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACGACCACCACCGCTGCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCGGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGACGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGCCTCCGGTTTTGAACTTAACGCCGGTGGATCACGAAGATCCGGTACGAATTTAA

mRNA sequence

ATGTCAATTCAATTCACTTCCATTCATGGACAGCAAGACTTCCATTATTCAAGAAAGCTCTTCACCGCTGCTGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGTTGGCGGCGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCTTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACGACCACCACCGCTGCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCGGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGACGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGCCTCCGGTTTTGAACTTAACGCCGGTGGATCACGAAGATCCGGTACGAATTTAA

Coding sequence (CDS)

ATGTCAATTCAATTCACTTCCATTCATGGACAGCAAGACTTCCATTATTCAAGAAAGCTCTTCACCGCTGCTGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGTTGGCGGCGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCTTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACGACCACCACCGCTGCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCGGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGACGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGCCTCCGGTTTTGAACTTAACGCCGGTGGATCACGAAGATCCGGTACGAATTTAA

Protein sequence

MSIQFTSIHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIADVGSSTSTSGQPPPPVLNLTPVDHEDPVRI

Homology

[Close]

BLAST of Cp4.1LG05g10720.1 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.5e-52
Identity = 108/199 (54.27%), Postives = 136/199 (68.34%), Query Frame = 1


Query: 16  YSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCA 75
           YSRKL       +   P  S  VG    D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA
Sbjct: 26  YSRKLLFHTHDQS-PTPAPSPYVG----DNNFDANVVMVLSVLLCALVCSLGLNSIIRCA 85

Query: 76  FKCSRIVVSH---DHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSD 135
            +CS +V S    D+ P   T    TGV +KA+KSF  V +S ELN PG+D+EC ICLS+
Sbjct: 86  LRCSNLVPSEAGGDNYPVRLTN---TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSE 145

Query: 136 FAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIADVGSSTSTSGQPP 195
           F A ++++LLP C+HGFHVRCIDKWL+SHSSCP CR CL+QTC+KIAD   ++S +   P
Sbjct: 146 FVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQP 205

Query: 196 PP---VLNLTPVDHEDPVR 209
           P    +L + P++ E  +R
Sbjct: 206 PQDSIILQIAPLEPERWIR 216

[Close]

BLAST of Cp4.1LG05g10720.1 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LS+L+C +IC LG
Sbjct: 28  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVMMLLSILICGIICCLG 87

Query: 68  LNSIIRCAFKCSRIVVSHDHRPPTTTTAAPT--GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCA + S   +  +  P  ++T   +  G+ KKA++ F VV +SPE+N PG+D E
Sbjct: 88  LHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEE 147

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 148 CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQA 206

Query: 188 TSTSGQPPPPVL 197
            S + +P   V+
Sbjct: 208 DSVTAEPTEIVI 206

[Close]

BLAST of Cp4.1LG05g10720.1 vs. Swiss-Prot
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-42
Identity = 84/147 (57.14%), Postives = 109/147 (74.15%), Query Frame = 1


Query: 50  NVVMVLSVLLCALICSLGLNSIIRCAFKCSR-IVVSHDHRPPTTT--TAAPTGVHKKAIK 109
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  ++S     P+T   ++   G+ KKA+K
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 110 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 169
              VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +CPK
Sbjct: 111 MLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPK 170

Query: 170 CRQCLVQTCQKI------ADVGSSTST 188
           CR CLV TCQK+      AD  ++T+T
Sbjct: 171 CRHCLVDTCQKVLSDCDAADQVAATAT 197

[Close]

BLAST of Cp4.1LG05g10720.1 vs. Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-42
Identity = 88/206 (42.72%), Postives = 125/206 (60.68%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LSVL+C +IC LG
Sbjct: 29  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVLMLLSVLICGIICCLG 88

Query: 68  LNSIIRCAFK-CSRIVVSHDHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCAF+  S  ++S      +T   +   G++KKA++ F VV +SPE+N PG+  E
Sbjct: 89  LHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEE 148

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G+++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 149 CVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQA 208

Query: 188 TSTSGQPPPPVL-NLTPVDHEDPVRI 210
              +  P   V+  + P++ E  V I
Sbjct: 209 DQVAATPTASVIVRIAPLEPEGRVNI 221

[Close]

BLAST of Cp4.1LG05g10720.1 vs. Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-41
Identity = 89/185 (48.11%), Postives = 122/185 (65.95%), Query Frame = 1


Query: 30  HNPLQSISVGGGG---PDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFK-CSRIVVSH 89
           HN L+  +V        + +   NV+M+LSVL+C +IC LGL+ IIRCAF+  SR ++S 
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 90  DHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPK 149
                +T  ++   G+ KKA++ F VV +S E+N PG+  EC+ICLSDF +G++LRLLPK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 150 CNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSSTSTSGQPPPPVL-NLTPVD 208
           CNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   + S +  P   V+  + P++
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTESVIVRIDPLE 213

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TrEMBL
Match: A0A0A0LQ73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G301540 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.8e-69
Identity = 145/221 (65.61%), Postives = 167/221 (75.57%), Query Frame = 1


Query: 12  QDFHYSRKLF-------------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVL 71
           Q FHYSRKL              +AA PSA+H+  +  S   GG  T+FDTNVVMVLSVL
Sbjct: 17  QVFHYSRKLLLHSSLHKLSFTTTSAAPPSAVHDQSEFYS---GGDSTTFDTNVVMVLSVL 76

Query: 72  LCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELN 131
           LCALICSL LNSIIRCA KCSR++VS+DHR   T T+  TGVHKKAIKSFTVVQFS +LN
Sbjct: 77  LCALICSLALNSIIRCALKCSRLIVSNDHRHRLTPTS--TGVHKKAIKSFTVVQFSLDLN 136

Query: 132 FPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI 191
            PG+D EC+ICLS+FA GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC+KI
Sbjct: 137 LPGLDPECVICLSEFATGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCEKI 196

Query: 192 ADVGS-----STSTSGQ----PPPP--VLNLTPVDHEDPVR 209
           A V S     S+S+SG     PPPP  V++L P++ E PVR
Sbjct: 197 AGVASASASASSSSSGHSPSPPPPPSVVVDLAPLEPEAPVR 232

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TrEMBL
Match: I1KBG6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G150400 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 115/221 (52.04%), Postives = 148/221 (66.97%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLSVLL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSVLL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TrEMBL
Match: A0A0B2PKB1_GLYSO (RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_011859 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 114/221 (51.58%), Postives = 148/221 (66.97%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLS+LL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSILL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TrEMBL
Match: C6TAH2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55
Identity = 113/204 (55.39%), Postives = 144/204 (70.59%), Query Frame = 1


Query: 2   SIQFTS--IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNV 61
           S  FTS  +H  ++FHYSR+L         +   P++ H+  ++  +G G    +FD NV
Sbjct: 6   STSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETY-LGDG----NFDANV 65

Query: 62  VMVLSVLLCALICSLGLNSIIRCAFKCSRIVVS-----HDHRPPTTTTAAPTGVHKKAIK 121
           VMVLSVLLCALICSLGLNSIIRCA +CS  VVS     +++ PP     A TGV KKA+K
Sbjct: 66  VMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALK 125

Query: 122 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 181
           +F  V +S ELN P +DSEC+ICLS+F +GDK+R+LPKCNH FHVRCIDKWL+SHSSCPK
Sbjct: 126 TFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPK 185

Query: 182 CRQCLVQTCQKIADVGSSTSTSGQ 191
           CRQCL++TCQKI    +  ++S Q
Sbjct: 186 CRQCLIETCQKIVGCSTQQASSSQ 204

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TrEMBL
Match: A0A0B2RGR9_GLYSO (RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_012773 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55
Identity = 113/204 (55.39%), Postives = 144/204 (70.59%), Query Frame = 1


Query: 2   SIQFTS--IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNV 61
           S  FTS  +H  ++FHYSR+L         +   P++ H+  ++  +G G    +FD NV
Sbjct: 6   STSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETY-LGDG----NFDANV 65

Query: 62  VMVLSVLLCALICSLGLNSIIRCAFKCSRIVVS-----HDHRPPTTTTAAPTGVHKKAIK 121
           VMVLSVLLCALICSLGLNSIIRCA +CS  VVS     +++ PP     A TGV KKA+K
Sbjct: 66  VMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALK 125

Query: 122 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 181
           +F  V +S ELN P +DSEC+ICLS+F +GDK+R+LPKCNH FHVRCIDKWL+SHSSCPK
Sbjct: 126 TFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPK 185

Query: 182 CRQCLVQTCQKIADVGSSTSTSGQ 191
           CRQCL++TCQKI    +  ++S Q
Sbjct: 186 CRQCLIETCQKIVGCSTQQASSSQ 204

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-53
Identity = 108/199 (54.27%), Postives = 136/199 (68.34%), Query Frame = 1


Query: 16  YSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCA 75
           YSRKL       +   P  S  VG    D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA
Sbjct: 26  YSRKLLFHTHDQS-PTPAPSPYVG----DNNFDANVVMVLSVLLCALVCSLGLNSIIRCA 85

Query: 76  FKCSRIVVSH---DHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSD 135
            +CS +V S    D+ P   T    TGV +KA+KSF  V +S ELN PG+D+EC ICLS+
Sbjct: 86  LRCSNLVPSEAGGDNYPVRLTN---TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSE 145

Query: 136 FAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIADVGSSTSTSGQPP 195
           F A ++++LLP C+HGFHVRCIDKWL+SHSSCP CR CL+QTC+KIAD   ++S +   P
Sbjct: 146 FVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQP 205

Query: 196 PP---VLNLTPVDHEDPVR 209
           P    +L + P++ E  +R
Sbjct: 206 PQDSIILQIAPLEPERWIR 216

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TAIR10
Match: AT1G49220.1 (AT1G49220.1 RING/U-box superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LS+L+C +IC LG
Sbjct: 28  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVMMLLSILICGIICCLG 87

Query: 68  LNSIIRCAFKCSRIVVSHDHRPPTTTTAAPT--GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCA + S   +  +  P  ++T   +  G+ KKA++ F VV +SPE+N PG+D E
Sbjct: 88  LHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEE 147

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 148 CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQA 206

Query: 188 TSTSGQPPPPVL 197
            S + +P   V+
Sbjct: 208 DSVTAEPTEIVI 206

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TAIR10
Match: AT3G18773.1 (AT3G18773.1 RING/U-box superfamily protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-43
Identity = 84/147 (57.14%), Postives = 109/147 (74.15%), Query Frame = 1


Query: 50  NVVMVLSVLLCALICSLGLNSIIRCAFKCSR-IVVSHDHRPPTTT--TAAPTGVHKKAIK 109
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  ++S     P+T   ++   G+ KKA+K
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 110 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 169
              VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +CPK
Sbjct: 111 MLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPK 170

Query: 170 CRQCLVQTCQKI------ADVGSSTST 188
           CR CLV TCQK+      AD  ++T+T
Sbjct: 171 CRHCLVDTCQKVLSDCDAADQVAATAT 197

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TAIR10
Match: AT1G49200.1 (AT1G49200.1 RING/U-box superfamily protein)

HSP 1 Score: 171.8 bits (434), Expect = 4.5e-43
Identity = 88/206 (42.72%), Postives = 125/206 (60.68%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LSVL+C +IC LG
Sbjct: 29  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVLMLLSVLICGIICCLG 88

Query: 68  LNSIIRCAFK-CSRIVVSHDHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCAF+  S  ++S      +T   +   G++KKA++ F VV +SPE+N PG+  E
Sbjct: 89  LHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEE 148

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G+++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 149 CVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQA 208

Query: 188 TSTSGQPPPPVL-NLTPVDHEDPVRI 210
              +  P   V+  + P++ E  V I
Sbjct: 209 DQVAATPTASVIVRIAPLEPEGRVNI 221

[Close]

BLAST of Cp4.1LG05g10720.1 vs. TAIR10
Match: AT1G49210.1 (AT1G49210.1 RING/U-box superfamily protein)

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-42
Identity = 89/185 (48.11%), Postives = 122/185 (65.95%), Query Frame = 1


Query: 30  HNPLQSISVGGGG---PDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFK-CSRIVVSH 89
           HN L+  +V        + +   NV+M+LSVL+C +IC LGL+ IIRCAF+  SR ++S 
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 90  DHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPK 149
                +T  ++   G+ KKA++ F VV +S E+N PG+  EC+ICLSDF +G++LRLLPK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 150 CNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSSTSTSGQPPPPVL-NLTPVD 208
           CNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   + S +  P   V+  + P++
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTESVIVRIDPLE 213

[Close]

BLAST of Cp4.1LG05g10720.1 vs. NCBI nr
Match: gi|659121972|ref|XP_008460910.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo])

HSP 1 Score: 276.2 bits (705), Expect = 4.8e-71
Identity = 148/225 (65.78%), Postives = 171/225 (76.00%), Query Frame = 1


Query: 6   TSIHGQQDFHYSRKL----------FTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVL 65
           T+IH  + F YSRKL          FTAAAPSA+H+  +  S   GG  T+FDTNVVMVL
Sbjct: 8   TNIH-HEVFRYSRKLLLHSSLHKLSFTAAAPSAVHDQSEFYS---GGDSTTFDTNVVMVL 67

Query: 66  SVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSP 125
           SVLLCALICSL LNS+IRCA KCSR +VS+DHR     T+  TGVHKKAIKSFTVVQFSP
Sbjct: 68  SVLLCALICSLALNSVIRCALKCSRFLVSNDHRRHPAPTS--TGVHKKAIKSFTVVQFSP 127

Query: 126 ELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTC 185
           +LN PG+DSEC+ICLS+F  GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC
Sbjct: 128 DLNLPGLDSECVICLSEFVTGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTC 187

Query: 186 QKIADV---GSSTSTSGQ-------PPPP--VLNLTPVDHEDPVR 209
           +KIA V    S++S+SG        PPPP  V+NL P++ E PVR
Sbjct: 188 EKIAGVIASASASSSSGHSPSPPPPPPPPSVVVNLAPLEPEAPVR 226

[Close]

BLAST of Cp4.1LG05g10720.1 vs. NCBI nr
Match: gi|449459292|ref|XP_004147380.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 2.6e-69
Identity = 145/221 (65.61%), Postives = 167/221 (75.57%), Query Frame = 1


Query: 12  QDFHYSRKLF-------------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVL 71
           Q FHYSRKL              +AA PSA+H+  +  S   GG  T+FDTNVVMVLSVL
Sbjct: 17  QVFHYSRKLLLHSSLHKLSFTTTSAAPPSAVHDQSEFYS---GGDSTTFDTNVVMVLSVL 76

Query: 72  LCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELN 131
           LCALICSL LNSIIRCA KCSR++VS+DHR   T T+  TGVHKKAIKSFTVVQFS +LN
Sbjct: 77  LCALICSLALNSIIRCALKCSRLIVSNDHRHRLTPTS--TGVHKKAIKSFTVVQFSLDLN 136

Query: 132 FPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI 191
            PG+D EC+ICLS+FA GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC+KI
Sbjct: 137 LPGLDPECVICLSEFATGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCEKI 196

Query: 192 ADVGS-----STSTSGQ----PPPP--VLNLTPVDHEDPVR 209
           A V S     S+S+SG     PPPP  V++L P++ E PVR
Sbjct: 197 AGVASASASASSSSSGHSPSPPPPPSVVVDLAPLEPEAPVR 232

[Close]

BLAST of Cp4.1LG05g10720.1 vs. NCBI nr
Match: gi|947105478|gb|KRH53861.1| (hypothetical protein GLYMA_06G150400 [Glycine max])

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 115/221 (52.04%), Postives = 148/221 (66.97%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLSVLL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSVLL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

[Close]

BLAST of Cp4.1LG05g10720.1 vs. NCBI nr
Match: gi|734340947|gb|KHN09585.1| (RING-H2 finger protein ATL78 [Glycine soja])

HSP 1 Score: 224.2 bits (570), Expect = 2.2e-55
Identity = 114/221 (51.58%), Postives = 148/221 (66.97%), Query Frame = 1


Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLS+LL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSILL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

[Close]

BLAST of Cp4.1LG05g10720.1 vs. NCBI nr
Match: gi|959092437|ref|NP_001304608.1| (RING-H2 finger protein ATL78-like [Glycine max])

HSP 1 Score: 223.8 bits (569), Expect = 2.8e-55
Identity = 113/204 (55.39%), Postives = 144/204 (70.59%), Query Frame = 1


Query: 2   SIQFTS--IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNV 61
           S  FTS  +H  ++FHYSR+L         +   P++ H+  ++  +G G    +FD NV
Sbjct: 6   STSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETY-LGDG----NFDANV 65

Query: 62  VMVLSVLLCALICSLGLNSIIRCAFKCSRIVVS-----HDHRPPTTTTAAPTGVHKKAIK 121
           VMVLSVLLCALICSLGLNSIIRCA +CS  VVS     +++ PP     A TGV KKA+K
Sbjct: 66  VMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALK 125

Query: 122 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 181
           +F  V +S ELN P +DSEC+ICLS+F +GDK+R+LPKCNH FHVRCIDKWL+SHSSCPK
Sbjct: 126 TFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPK 185

Query: 182 CRQCLVQTCQKIADVGSSTSTSGQ 191
           CRQCL++TCQKI    +  ++S Q
Sbjct: 186 CRQCLIETCQKIVGCSTQQASSSQ 204

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g10720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL78_ARATH	6.5e-52	54.27	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1	[more]
ATL10_ARATH	1.9e-43	45.31	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1	[more]
ATL77_ARATH	2.7e-42	57.14	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1	[more]
ATL75_ARATH	8.0e-42	42.72	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1	[more]
ATL76_ARATH	1.8e-41	48.11	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1	[more]

BLAST of Cp4.1LG05g10720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ73_CUCSA	1.8e-69	65.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G301540 PE=4 SV=1	[more]
I1KBG6_SOYBN	1.2e-55	52.04	Uncharacterized protein OS=Glycine max GN=GLYMA_06G150400 PE=4 SV=1	[more]
A0A0B2PKB1_GLYSO	1.5e-55	51.58	RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_011859 PE=4 SV=1	[more]
C6TAH2_SOYBN	2.0e-55	55.39	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0B2RGR9_GLYSO	2.0e-55	55.39	RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_012773 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g10720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49230.1	3.7e-53	54.27	RING/U-box superfamily protein	[more]
AT1G49220.1	1.1e-44	45.31	RING/U-box superfamily protein	[more]
AT3G18773.1	1.5e-43	57.14	RING/U-box superfamily protein	[more]
AT1G49200.1	4.5e-43	42.72	RING/U-box superfamily protein	[more]
AT1G49210.1	1.0e-42	48.11	RING/U-box superfamily protein	[more]

BLAST of Cp4.1LG05g10720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121972\|ref\|XP_008460910.1\|	4.8e-71	65.78	PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo]	[more]
gi\|449459292\|ref\|XP_004147380.1\|	2.6e-69	65.61	PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus]	[more]
gi\|947105478\|gb\|KRH53861.1\|	1.7e-55	52.04	hypothetical protein GLYMA_06G150400 [Glycine max]	[more]
gi\|734340947\|gb\|KHN09585.1\|	2.2e-55	51.58	RING-H2 finger protein ATL78 [Glycine soja]	[more]
gi\|959092437\|ref\|NP_001304608.1\|	2.8e-55	55.39	RING-H2 finger protein ATL78-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g10720	Cp4.1LG05g10720	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g10720.1:cds:001	Cp4.1LG05g10720.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g10720.1	Cp4.1LG05g10720.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 125..168 score: 2.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 126..167 score: 4.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 126..168 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 123..171 score: 9.2
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 47..193 score: 4.1
None	No IPR available	PANTHER	PTHR14155:SF106	SUBFAMILY NOT NAMED	coord: 47..193 score: 4.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 104..174 score: 5.3