Cp4.1LG05g10720 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG05g10720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING-H2 finger protein ATL78
LocationCp4.1LG05 : 7091261 .. 7091890 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATTCAATTCACTTCCATTCATGGACAGCAAGACTTCCATTATTCAAGAAAGCTCTTCACCGCTGCTGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGTTGGCGGCGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCTTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACGACCACCACCGCTGCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCGGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGACGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGCCTCCGGTTTTGAACTTAACGCCGGTGGATCACGAAGATCCGGTACGAATTTAA

mRNA sequence

ATGTCAATTCAATTCACTTCCATTCATGGACAGCAAGACTTCCATTATTCAAGAAAGCTCTTCACCGCTGCTGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGTTGGCGGCGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCTTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACGACCACCACCGCTGCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCGGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGACGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGCCTCCGGTTTTGAACTTAACGCCGGTGGATCACGAAGATCCGGTACGAATTTAA

Coding sequence (CDS)

ATGTCAATTCAATTCACTTCCATTCATGGACAGCAAGACTTCCATTATTCAAGAAAGCTCTTCACCGCTGCTGCCCCCTCCGCCCTCCACAACCCACTCCAATCCATCTCCGTTGGCGGCGGCGGTCCCGACACCAGCTTCGACACCAATGTCGTCATGGTCCTCTCCGTCCTCCTCTGCGCCTTAATCTGCTCTTTAGGCCTCAACTCCATCATCAGATGCGCTTTTAAATGCTCTCGAATTGTCGTCTCCCACGACCACCGTCCTCCCACGACCACCACCGCTGCCCCGACCGGAGTTCACAAGAAGGCCATCAAGAGCTTTACTGTTGTTCAATTCTCCCCGGAGCTCAACTTCCCCGGGATGGATAGTGAGTGCATTATTTGCTTGTCGGACTTTGCTGCCGGCGACAAACTCCGGCTGCTCCCTAAGTGTAACCATGGATTTCATGTTAGGTGTATTGATAAGTGGCTCACTTCTCACTCCTCTTGCCCTAAATGTCGTCAGTGTTTAGTTCAAACTTGTCAGAAGATCGCCGACGTTGGCTCCTCCACCTCCACCTCCGGTCAACCGCCGCCTCCGGTTTTGAACTTAACGCCGGTGGATCACGAAGATCCGGTACGAATTTAA

Protein sequence

MSIQFTSIHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIADVGSSTSTSGQPPPPVLNLTPVDHEDPVRI
BLAST of Cp4.1LG05g10720 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.5e-52
Identity = 108/199 (54.27%), Postives = 136/199 (68.34%), Query Frame = 1

Query: 16  YSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCA 75
           YSRKL       +   P  S  VG    D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA
Sbjct: 26  YSRKLLFHTHDQS-PTPAPSPYVG----DNNFDANVVMVLSVLLCALVCSLGLNSIIRCA 85

Query: 76  FKCSRIVVSH---DHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSD 135
            +CS +V S    D+ P   T    TGV +KA+KSF  V +S ELN PG+D+EC ICLS+
Sbjct: 86  LRCSNLVPSEAGGDNYPVRLTN---TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSE 145

Query: 136 FAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIADVGSSTSTSGQPP 195
           F A ++++LLP C+HGFHVRCIDKWL+SHSSCP CR CL+QTC+KIAD   ++S +   P
Sbjct: 146 FVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQP 205

Query: 196 PP---VLNLTPVDHEDPVR 209
           P    +L + P++ E  +R
Sbjct: 206 PQDSIILQIAPLEPERWIR 216

BLAST of Cp4.1LG05g10720 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LS+L+C +IC LG
Sbjct: 28  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVMMLLSILICGIICCLG 87

Query: 68  LNSIIRCAFKCSRIVVSHDHRPPTTTTAAPT--GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCA + S   +  +  P  ++T   +  G+ KKA++ F VV +SPE+N PG+D E
Sbjct: 88  LHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEE 147

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 148 CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQA 206

Query: 188 TSTSGQPPPPVL 197
            S + +P   V+
Sbjct: 208 DSVTAEPTEIVI 206

BLAST of Cp4.1LG05g10720 vs. Swiss-Prot
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-42
Identity = 84/147 (57.14%), Postives = 109/147 (74.15%), Query Frame = 1

Query: 50  NVVMVLSVLLCALICSLGLNSIIRCAFKCSR-IVVSHDHRPPTTT--TAAPTGVHKKAIK 109
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  ++S     P+T   ++   G+ KKA+K
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 110 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 169
              VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +CPK
Sbjct: 111 MLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPK 170

Query: 170 CRQCLVQTCQKI------ADVGSSTST 188
           CR CLV TCQK+      AD  ++T+T
Sbjct: 171 CRHCLVDTCQKVLSDCDAADQVAATAT 197

BLAST of Cp4.1LG05g10720 vs. Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.0e-42
Identity = 88/206 (42.72%), Postives = 125/206 (60.68%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LSVL+C +IC LG
Sbjct: 29  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVLMLLSVLICGIICCLG 88

Query: 68  LNSIIRCAFK-CSRIVVSHDHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCAF+  S  ++S      +T   +   G++KKA++ F VV +SPE+N PG+  E
Sbjct: 89  LHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEE 148

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G+++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 149 CVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQA 208

Query: 188 TSTSGQPPPPVL-NLTPVDHEDPVRI 210
              +  P   V+  + P++ E  V I
Sbjct: 209 DQVAATPTASVIVRIAPLEPEGRVNI 221

BLAST of Cp4.1LG05g10720 vs. Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-41
Identity = 89/185 (48.11%), Postives = 122/185 (65.95%), Query Frame = 1

Query: 30  HNPLQSISVGGGG---PDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFK-CSRIVVSH 89
           HN L+  +V        + +   NV+M+LSVL+C +IC LGL+ IIRCAF+  SR ++S 
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 90  DHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPK 149
                +T  ++   G+ KKA++ F VV +S E+N PG+  EC+ICLSDF +G++LRLLPK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 150 CNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSSTSTSGQPPPPVL-NLTPVD 208
           CNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   + S +  P   V+  + P++
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTESVIVRIDPLE 213

BLAST of Cp4.1LG05g10720 vs. TrEMBL
Match: A0A0A0LQ73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G301540 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.8e-69
Identity = 145/221 (65.61%), Postives = 167/221 (75.57%), Query Frame = 1

Query: 12  QDFHYSRKLF-------------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVL 71
           Q FHYSRKL              +AA PSA+H+  +  S   GG  T+FDTNVVMVLSVL
Sbjct: 17  QVFHYSRKLLLHSSLHKLSFTTTSAAPPSAVHDQSEFYS---GGDSTTFDTNVVMVLSVL 76

Query: 72  LCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELN 131
           LCALICSL LNSIIRCA KCSR++VS+DHR   T T+  TGVHKKAIKSFTVVQFS +LN
Sbjct: 77  LCALICSLALNSIIRCALKCSRLIVSNDHRHRLTPTS--TGVHKKAIKSFTVVQFSLDLN 136

Query: 132 FPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI 191
            PG+D EC+ICLS+FA GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC+KI
Sbjct: 137 LPGLDPECVICLSEFATGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCEKI 196

Query: 192 ADVGS-----STSTSGQ----PPPP--VLNLTPVDHEDPVR 209
           A V S     S+S+SG     PPPP  V++L P++ E PVR
Sbjct: 197 AGVASASASASSSSSGHSPSPPPPPSVVVDLAPLEPEAPVR 232

BLAST of Cp4.1LG05g10720 vs. TrEMBL
Match: I1KBG6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G150400 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 115/221 (52.04%), Postives = 148/221 (66.97%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLSVLL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSVLL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

BLAST of Cp4.1LG05g10720 vs. TrEMBL
Match: A0A0B2PKB1_GLYSO (RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_011859 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 114/221 (51.58%), Postives = 148/221 (66.97%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLS+LL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSILL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

BLAST of Cp4.1LG05g10720 vs. TrEMBL
Match: C6TAH2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55
Identity = 113/204 (55.39%), Postives = 144/204 (70.59%), Query Frame = 1

Query: 2   SIQFTS--IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNV 61
           S  FTS  +H  ++FHYSR+L         +   P++ H+  ++  +G G    +FD NV
Sbjct: 6   STSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETY-LGDG----NFDANV 65

Query: 62  VMVLSVLLCALICSLGLNSIIRCAFKCSRIVVS-----HDHRPPTTTTAAPTGVHKKAIK 121
           VMVLSVLLCALICSLGLNSIIRCA +CS  VVS     +++ PP     A TGV KKA+K
Sbjct: 66  VMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALK 125

Query: 122 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 181
           +F  V +S ELN P +DSEC+ICLS+F +GDK+R+LPKCNH FHVRCIDKWL+SHSSCPK
Sbjct: 126 TFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPK 185

Query: 182 CRQCLVQTCQKIADVGSSTSTSGQ 191
           CRQCL++TCQKI    +  ++S Q
Sbjct: 186 CRQCLIETCQKIVGCSTQQASSSQ 204

BLAST of Cp4.1LG05g10720 vs. TrEMBL
Match: A0A0B2RGR9_GLYSO (RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_012773 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55
Identity = 113/204 (55.39%), Postives = 144/204 (70.59%), Query Frame = 1

Query: 2   SIQFTS--IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNV 61
           S  FTS  +H  ++FHYSR+L         +   P++ H+  ++  +G G    +FD NV
Sbjct: 6   STSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETY-LGDG----NFDANV 65

Query: 62  VMVLSVLLCALICSLGLNSIIRCAFKCSRIVVS-----HDHRPPTTTTAAPTGVHKKAIK 121
           VMVLSVLLCALICSLGLNSIIRCA +CS  VVS     +++ PP     A TGV KKA+K
Sbjct: 66  VMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALK 125

Query: 122 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 181
           +F  V +S ELN P +DSEC+ICLS+F +GDK+R+LPKCNH FHVRCIDKWL+SHSSCPK
Sbjct: 126 TFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPK 185

Query: 182 CRQCLVQTCQKIADVGSSTSTSGQ 191
           CRQCL++TCQKI    +  ++S Q
Sbjct: 186 CRQCLIETCQKIVGCSTQQASSSQ 204

BLAST of Cp4.1LG05g10720 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-53
Identity = 108/199 (54.27%), Postives = 136/199 (68.34%), Query Frame = 1

Query: 16  YSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLGLNSIIRCA 75
           YSRKL       +   P  S  VG    D +FD NVVMVLSVLLCAL+CSLGLNSIIRCA
Sbjct: 26  YSRKLLFHTHDQS-PTPAPSPYVG----DNNFDANVVMVLSVLLCALVCSLGLNSIIRCA 85

Query: 76  FKCSRIVVSH---DHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELNFPGMDSECIICLSD 135
            +CS +V S    D+ P   T    TGV +KA+KSF  V +S ELN PG+D+EC ICLS+
Sbjct: 86  LRCSNLVPSEAGGDNYPVRLTN---TGVKRKALKSFQTVSYSTELNLPGLDTECAICLSE 145

Query: 136 FAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKIADVGSSTSTSGQPP 195
           F A ++++LLP C+HGFHVRCIDKWL+SHSSCP CR CL+QTC+KIAD   ++S +   P
Sbjct: 146 FVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQP 205

Query: 196 PP---VLNLTPVDHEDPVR 209
           P    +L + P++ E  +R
Sbjct: 206 PQDSIILQIAPLEPERWIR 216

BLAST of Cp4.1LG05g10720 vs. TAIR10
Match: AT1G49220.1 (AT1G49220.1 RING/U-box superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LS+L+C +IC LG
Sbjct: 28  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVMMLLSILICGIICCLG 87

Query: 68  LNSIIRCAFKCSRIVVSHDHRPPTTTTAAPT--GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCA + S   +  +  P  ++T   +  G+ KKA++ F VV +SPE+N PG+D E
Sbjct: 88  LHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEE 147

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G++LRLLPKCNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 148 CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQA 206

Query: 188 TSTSGQPPPPVL 197
            S + +P   V+
Sbjct: 208 DSVTAEPTEIVI 206

BLAST of Cp4.1LG05g10720 vs. TAIR10
Match: AT3G18773.1 (AT3G18773.1 RING/U-box superfamily protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-43
Identity = 84/147 (57.14%), Postives = 109/147 (74.15%), Query Frame = 1

Query: 50  NVVMVLSVLLCALICSLGLNSIIRCAFKCSR-IVVSHDHRPPTTT--TAAPTGVHKKAIK 109
           NV+M+LS+LLC +ICSLGL+ IIRCAF  SR  ++S     P+T   ++   G+ KKA+K
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 110 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 169
              VV +SPE+N PG+  EC+ICLSDF AG++LR+LPKCNHGFH+RCIDKWLT H +CPK
Sbjct: 111 MLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPK 170

Query: 170 CRQCLVQTCQKI------ADVGSSTST 188
           CR CLV TCQK+      AD  ++T+T
Sbjct: 171 CRHCLVDTCQKVLSDCDAADQVAATAT 197

BLAST of Cp4.1LG05g10720 vs. TAIR10
Match: AT1G49200.1 (AT1G49200.1 RING/U-box superfamily protein)

HSP 1 Score: 171.8 bits (434), Expect = 4.5e-43
Identity = 88/206 (42.72%), Postives = 125/206 (60.68%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLFTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLLCALICSLG 67
           +H   D +  R    A +P   H             + +   NV+M+LSVL+C +IC LG
Sbjct: 29  LHNPFDHNTQRAFAVAPSPLITH-------------ENNLSGNVLMLLSVLICGIICCLG 88

Query: 68  LNSIIRCAFK-CSRIVVSHDHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSE 127
           L+ IIRCAF+  S  ++S      +T   +   G++KKA++ F VV +SPE+N PG+  E
Sbjct: 89  LHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEE 148

Query: 128 CIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSS 187
           C+ICLSDF +G+++R+LPKC+HGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   +
Sbjct: 149 CVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKILGDFSQA 208

Query: 188 TSTSGQPPPPVL-NLTPVDHEDPVRI 210
              +  P   V+  + P++ E  V I
Sbjct: 209 DQVAATPTASVIVRIAPLEPEGRVNI 221

BLAST of Cp4.1LG05g10720 vs. TAIR10
Match: AT1G49210.1 (AT1G49210.1 RING/U-box superfamily protein)

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-42
Identity = 89/185 (48.11%), Postives = 122/185 (65.95%), Query Frame = 1

Query: 30  HNPLQSISVGGGG---PDTSFDTNVVMVLSVLLCALICSLGLNSIIRCAFK-CSRIVVSH 89
           HN L+  +V        + +   NV+M+LSVL+C +IC LGL+ IIRCAF+  SR ++S 
Sbjct: 34  HNSLRVFAVAPSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISE 93

Query: 90  DHRPPTTTTAAPT-GVHKKAIKSFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPK 149
                +T  ++   G+ KKA++ F VV +S E+N PG+  EC+ICLSDF +G++LRLLPK
Sbjct: 94  PISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPK 153

Query: 150 CNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI-ADVGSSTSTSGQPPPPVL-NLTPVD 208
           CNHGFHVRCIDKWL  H +CPKCR CLV+TCQKI  D   + S +  P   V+  + P++
Sbjct: 154 CNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTESVIVRIDPLE 213

BLAST of Cp4.1LG05g10720 vs. NCBI nr
Match: gi|659121972|ref|XP_008460910.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo])

HSP 1 Score: 276.2 bits (705), Expect = 4.8e-71
Identity = 148/225 (65.78%), Postives = 171/225 (76.00%), Query Frame = 1

Query: 6   TSIHGQQDFHYSRKL----------FTAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVL 65
           T+IH  + F YSRKL          FTAAAPSA+H+  +  S   GG  T+FDTNVVMVL
Sbjct: 8   TNIH-HEVFRYSRKLLLHSSLHKLSFTAAAPSAVHDQSEFYS---GGDSTTFDTNVVMVL 67

Query: 66  SVLLCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSP 125
           SVLLCALICSL LNS+IRCA KCSR +VS+DHR     T+  TGVHKKAIKSFTVVQFSP
Sbjct: 68  SVLLCALICSLALNSVIRCALKCSRFLVSNDHRRHPAPTS--TGVHKKAIKSFTVVQFSP 127

Query: 126 ELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTC 185
           +LN PG+DSEC+ICLS+F  GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC
Sbjct: 128 DLNLPGLDSECVICLSEFVTGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTC 187

Query: 186 QKIADV---GSSTSTSGQ-------PPPP--VLNLTPVDHEDPVR 209
           +KIA V    S++S+SG        PPPP  V+NL P++ E PVR
Sbjct: 188 EKIAGVIASASASSSSGHSPSPPPPPPPPSVVVNLAPLEPEAPVR 226

BLAST of Cp4.1LG05g10720 vs. NCBI nr
Match: gi|449459292|ref|XP_004147380.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 2.6e-69
Identity = 145/221 (65.61%), Postives = 167/221 (75.57%), Query Frame = 1

Query: 12  QDFHYSRKLF-------------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVL 71
           Q FHYSRKL              +AA PSA+H+  +  S   GG  T+FDTNVVMVLSVL
Sbjct: 17  QVFHYSRKLLLHSSLHKLSFTTTSAAPPSAVHDQSEFYS---GGDSTTFDTNVVMVLSVL 76

Query: 72  LCALICSLGLNSIIRCAFKCSRIVVSHDHRPPTTTTAAPTGVHKKAIKSFTVVQFSPELN 131
           LCALICSL LNSIIRCA KCSR++VS+DHR   T T+  TGVHKKAIKSFTVVQFS +LN
Sbjct: 77  LCALICSLALNSIIRCALKCSRLIVSNDHRHRLTPTS--TGVHKKAIKSFTVVQFSLDLN 136

Query: 132 FPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQTCQKI 191
            PG+D EC+ICLS+FA GDKLRLLPKCNHGFHV+CIDKWL+SHSSCPKCRQCLVQTC+KI
Sbjct: 137 LPGLDPECVICLSEFATGDKLRLLPKCNHGFHVKCIDKWLSSHSSCPKCRQCLVQTCEKI 196

Query: 192 ADVGS-----STSTSGQ----PPPP--VLNLTPVDHEDPVR 209
           A V S     S+S+SG     PPPP  V++L P++ E PVR
Sbjct: 197 AGVASASASASSSSSGHSPSPPPPPSVVVDLAPLEPEAPVR 232

BLAST of Cp4.1LG05g10720 vs. NCBI nr
Match: gi|947105478|gb|KRH53861.1| (hypothetical protein GLYMA_06G150400 [Glycine max])

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 115/221 (52.04%), Postives = 148/221 (66.97%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLSVLL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSVLL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

BLAST of Cp4.1LG05g10720 vs. NCBI nr
Match: gi|734340947|gb|KHN09585.1| (RING-H2 finger protein ATL78 [Glycine soja])

HSP 1 Score: 224.2 bits (570), Expect = 2.2e-55
Identity = 114/221 (51.58%), Postives = 148/221 (66.97%), Query Frame = 1

Query: 8   IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNVVMVLSVLL 67
           +H  ++FHYSR+L         +A  P + H+      +G G    +FD NVVMVLS+LL
Sbjct: 14  LHDLENFHYSRRLLLHSPYLNQSAKPPRSSHDSSTETYLGDG----NFDANVVMVLSILL 73

Query: 68  CALICSLGLNSIIRCAFKCSRIVVS------HDHRPPTTTTAAPTGVHKKAIKSFTVVQF 127
           CALICSLGLNSIIRCA +CS  VVS      +++  P     A TGV KKA+K+FT V +
Sbjct: 74  CALICSLGLNSIIRCALRCSNFVVSDSVATNNNNNNPPAARVANTGVKKKALKTFTTVSY 133

Query: 128 SPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPKCRQCLVQ 187
           S ELN P +DSEC+ICLS+F +G+K+R+LPKCNHGFH+RCIDKWL+SHSSCPKCRQCL++
Sbjct: 134 SAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHIRCIDKWLSSHSSCPKCRQCLIE 193

Query: 188 TCQKIADVGSSTSTSGQ------PPPPVLNLTPVDHEDPVR 209
           TCQKI    +  ++S Q      P   V  + P++ E  VR
Sbjct: 194 TCQKIVGCSTQQASSSQQHVLAVPETIVTIIAPLEPEGLVR 230

BLAST of Cp4.1LG05g10720 vs. NCBI nr
Match: gi|959092437|ref|NP_001304608.1| (RING-H2 finger protein ATL78-like [Glycine max])

HSP 1 Score: 223.8 bits (569), Expect = 2.8e-55
Identity = 113/204 (55.39%), Postives = 144/204 (70.59%), Query Frame = 1

Query: 2   SIQFTS--IHGQQDFHYSRKLF--------TAAAPSALHNPLQSISVGGGGPDTSFDTNV 61
           S  FTS  +H  ++FHYSR+L         +   P++ H+  ++  +G G    +FD NV
Sbjct: 6   STSFTSPLLHDLENFHYSRRLLLHSPYLNQSEKPPTSSHDSTETY-LGDG----NFDANV 65

Query: 62  VMVLSVLLCALICSLGLNSIIRCAFKCSRIVVS-----HDHRPPTTTTAAPTGVHKKAIK 121
           VMVLSVLLCALICSLGLNSIIRCA +CS  VVS     +++ PP     A TGV KKA+K
Sbjct: 66  VMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNNNNPPAAARVANTGVKKKALK 125

Query: 122 SFTVVQFSPELNFPGMDSECIICLSDFAAGDKLRLLPKCNHGFHVRCIDKWLTSHSSCPK 181
           +F  V +S ELN P +DSEC+ICLS+F +GDK+R+LPKCNH FHVRCIDKWL+SHSSCPK
Sbjct: 126 TFPTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHRFHVRCIDKWLSSHSSCPK 185

Query: 182 CRQCLVQTCQKIADVGSSTSTSGQ 191
           CRQCL++TCQKI    +  ++S Q
Sbjct: 186 CRQCLIETCQKIVGCSTQQASSSQ 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATL78_ARATH6.5e-5254.27RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1[more]
ATL10_ARATH1.9e-4345.31RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1[more]
ATL77_ARATH2.7e-4257.14RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1[more]
ATL75_ARATH8.0e-4242.72RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1[more]
ATL76_ARATH1.8e-4148.11E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LQ73_CUCSA1.8e-6965.61Uncharacterized protein OS=Cucumis sativus GN=Csa_2G301540 PE=4 SV=1[more]
I1KBG6_SOYBN1.2e-5552.04Uncharacterized protein OS=Glycine max GN=GLYMA_06G150400 PE=4 SV=1[more]
A0A0B2PKB1_GLYSO1.5e-5551.58RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_011859 PE=4 SV=1[more]
C6TAH2_SOYBN2.0e-5555.39Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A0B2RGR9_GLYSO2.0e-5555.39RING-H2 finger protein ATL78 OS=Glycine soja GN=glysoja_012773 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G49230.13.7e-5354.27 RING/U-box superfamily protein[more]
AT1G49220.11.1e-4445.31 RING/U-box superfamily protein[more]
AT3G18773.11.5e-4357.14 RING/U-box superfamily protein[more]
AT1G49200.14.5e-4342.72 RING/U-box superfamily protein[more]
AT1G49210.11.0e-4248.11 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659121972|ref|XP_008460910.1|4.8e-7165.78PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo][more]
gi|449459292|ref|XP_004147380.1|2.6e-6965.61PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus][more]
gi|947105478|gb|KRH53861.1|1.7e-5552.04hypothetical protein GLYMA_06G150400 [Glycine max][more]
gi|734340947|gb|KHN09585.1|2.2e-5551.58RING-H2 finger protein ATL78 [Glycine soja][more]
gi|959092437|ref|NP_001304608.1|2.8e-5555.39RING-H2 finger protein ATL78-like [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g10720.1Cp4.1LG05g10720.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 125..168
score: 2.4
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 126..167
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 126..168
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 123..171
score: 9.2
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 47..193
score: 4.1
NoneNo IPR availablePANTHERPTHR14155:SF106SUBFAMILY NOT NAMEDcoord: 47..193
score: 4.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 104..174
score: 5.3