Cp4.1LG05g05940.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g05940.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein yippee-like
Location	Cp4.1LG05 : 3556967 .. 3558607 (+)
Sequence length	1093

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCAAAAGGATATTGAAGAAATGTGTCTGAAACTGTAGAGCTTCAGAGGTGCTCAACCATGGAGGCCCACAATCCGTACTCGACCTTCGCGTAAATTTCTGACTTCTTTTCATTGTTCTTCCTCTTACTCTTCCCAAATTCAACTTCTCCTTCATTTTCTATGTTAATTAATCCCAAATTCCTTTTCACAGTCTCCAAGTTAAGAATGATTTCCATTTCTCTCTCTTCAATTTGTATTTATCTTTGCTTTAATCGCTCATACCTCATCAACTTTCTTCCATAATTTTCACTAAACTAATAATTTCCGGCACAATCAGGTTCTTCTCTCTCCCTTTATTTCCATTTTCCATAATTTCTTGTTCGTTGATTCAATGATTTTTCCACATTTTGGCTTTTCGGTATGCTCCTTCTCATACTTTTATTGGTGTTCCTGTTCTTGTTGTTGTTCTTAATCCTGTTCCTGTATTATTGAATCCCTTTTGCTTGAAATCTTCTCTCTGATCCTTTATGTTATCTTATATATTTGATCGCGAACCCCCTTTTGATTATTGATCTTTTTCTTTAGGTTTCTAGGTCACCATTGAAATCATTATAGGTAAACGATTTTGTTCTTGTTTTTAGTTTTCCCACCCCTCGTTGGGATTTTGATGATCCATTTATATGGTATCTTGATGGAAAGCTTGAATCTCTTTTAATGCAGTCTAGGTGTTTGATTTAATGCTTGGGGCTTGATGGTTGTGTAGGAGAAGAGGCGTCTTGAGCTCAATCTTCTTGATCAATGGCTGAACTATTGGGGCCACGTTTGTATAGCTGCTGTAATTGTAGAAACCATGTTGCCCTCCATGATGATATAATTTCTAAAGCTTTTCAGGTGGGATCTTAGTGCGTTTGATTATCATCAATGCGAAAGGGTTTGCTAATCTCTCAAAACCCAATGAGAAATTCATGGATTTGATGTTTTTAACACAGTTTTTCTGAAATTTTCGATTGCAAATGCCTTTCTAAAACTTTTCCTGAAGAAGTTTTCATTATCTAATCTTGTTTTTGTCATGAATTATCTCAATAGGGAAGACATGGGCGTGCTTTTCTGTTCTCTCATGCTATGAACATCACAGTGGGACCAAAAGAAGACCGGCATCTCATGACGGGTCTCCACACTGTTGCTGATGTGCATTGTGTTGACTGCCGTGAGGTGCTGGGGTGGAAGTATGAGAGGGCCTATGAGGCATCACAGAAGTATAAAGAAGGAAAGTTCATTCTTGAAAAATCAAAAATCGTTCGGGACAACTGGTAGCGTCCTGTGGATCTTGTTGAATGCATTGATTCTTATTTTGATGTAAGTTTATTGATTCTTCGTGATGTTATCTTGTATATAAAGTCATCATCGTTCTTGTTCTTGTTCTTGTTCTTGTTTCCTGTTTCCTGTTTCCTGTTGCTCTTGTATATAGTATATATCTGTGTAAGCTCTGAACATGACTGGATATCATTGTATCTTCAATGCTCACCATCTGTGTTAATGAAATTGTGGTGCTTAAAGTAAGTCCTTCTTGCATTGAACATGACCTGGATTCCTTTGATATTGTTGTCTTGTCTTATGGCTCTATCGGTGTTCGGTACGCGTTCTCTTCTTTTAGTTTACA

mRNA sequence

TATCAAAAGGATATTGAAGAAATGTGTCTGAAACTGTAGAGCTTCAGAGGTGCTCAACCATGGAGGCCCACAATCCGTACTCGACCTTCGCGTAAATTTCTGACTTCTTTTCATTGTTCTTCCTCTTACTCTTCCCAAATTCAACTTCTCCTTCATTTTCTATGTTAATTAATCCCAAATTCCTTTTCACAGTCTCCAAGTTAAGAATGATTTCCATTTCTCTCTCTTCAATTTGTATTTATCTTTGCTTTAATCGCTCATACCTCATCAACTTTCTTCCATAATTTTCACTAAACTAATAATTTCCGGCACAATCAGGTTTCTAGGTCACCATTGAAATCATTATAGTCTAGGTGTTTGATTTAATGCTTGGGGCTTGATGGTTGTGTAGGAGAAGAGGCGTCTTGAGCTCAATCTTCTTGATCAATGGCTGAACTATTGGGGCCACGTTTGTATAGCTGCTGTAATTGTAGAAACCATGTTGCCCTCCATGATGATATAATTTCTAAAGCTTTTCAGGGAAGACATGGGCGTGCTTTTCTGTTCTCTCATGCTATGAACATCACAGTGGGACCAAAAGAAGACCGGCATCTCATGACGGGTCTCCACACTGTTGCTGATGTGCATTGTGTTGACTGCCGTGAGGTGCTGGGGTGGAAGTATGAGAGGGCCTATGAGGCATCACAGAAGTATAAAGAAGGAAAGTTCATTCTTGAAAAATCAAAAATCGTTCGGGACAACTGGTAGCGTCCTGTGGATCTTGTTGAATGCATTGATTCTTATTTTGATGTAAGTTTATTGATTCTTCGTGATGTTATCTTGTATATAAAGTCATCATCGTTCTTGTTCTTGTTCTTGTTCTTGTTTCCTGTTTCCTGTTTCCTGTTGCTCTTGTATATAGTATATATCTGTGTAAGCTCTGAACATGACTGGATATCATTGTATCTTCAATGCTCACCATCTGTGTTAATGAAATTGTGGTGCTTAAAGTAAGTCCTTCTTGCATTGAACATGACCTGGATTCCTTTGATATTGTTGTCTTGTCTTATGGCTCTATCGGTGTTCGGTACGCGTTCTCTTCTTTTAGTTTACA

Coding sequence (CDS)

ATGGCTGAACTATTGGGGCCACGTTTGTATAGCTGCTGTAATTGTAGAAACCATGTTGCCCTCCATGATGATATAATTTCTAAAGCTTTTCAGGGAAGACATGGGCGTGCTTTTCTGTTCTCTCATGCTATGAACATCACAGTGGGACCAAAAGAAGACCGGCATCTCATGACGGGTCTCCACACTGTTGCTGATGTGCATTGTGTTGACTGCCGTGAGGTGCTGGGGTGGAAGTATGAGAGGGCCTATGAGGCATCACAGAAGTATAAAGAAGGAAAGTTCATTCTTGAAAAATCAAAAATCGTTCGGGACAACTGGTAG

Protein sequence

MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW

Homology

[Close]

BLAST of Cp4.1LG05g05940.1 vs. Swiss-Prot
Match: YIPL6_ARATH (Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-50
Identity = 88/106 (83.02%), Postives = 97/106 (91.51%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MA+ +GPRLYSCCNCRNHV LHDDIISKAFQGR GRAFLFSHAMNI VGPKEDR+L+TGL
Sbjct: 1   MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVAD+ CVDC E LGWKYERAYE SQKYKEGKFI EK+KIV+++W
Sbjct: 61  HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. Swiss-Prot
Match: YPEL3_MOUSE (Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-33
Identity = 58/98 (59.18%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 8   RLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVH 67
           R YSC +CR H+A HDD+ISK+FQG  GRA+LF+  +N+  GP E+R L+TGLH VAD+H
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 68  CVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDN 106
           C +C+  LGWKYE+A+E+SQKYKEGK+I+E + +++DN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

[Close]

BLAST of Cp4.1LG05g05940.1 vs. Swiss-Prot
Match: YPEL3_BOVIN (Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-33
Identity = 58/98 (59.18%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 8   RLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVH 67
           R YSC +CR H+A HDD+ISK+FQG  GRA+LF+  +N+  GP E+R L+TGLH VAD+H
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 68  CVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDN 106
           C +C+  LGWKYE+A+E+SQKYKEGK+I+E + +++DN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

[Close]

BLAST of Cp4.1LG05g05940.1 vs. Swiss-Prot
Match: YPEL3_CHLAE (Protein yippee-like 3 OS=Chlorocebus aethiops GN=YPEL3 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-33
Identity = 58/98 (59.18%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 8   RLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVH 67
           R YSC +CR H+A HDD+ISK+FQG  GRA+LF+  +N+  GP E+R L+TGLH VAD+H
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 68  CVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDN 106
           C +C+  LGWKYE+A+E+SQKYKEGK+I+E + +++DN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

[Close]

BLAST of Cp4.1LG05g05940.1 vs. Swiss-Prot
Match: YPEL3_HUMAN (Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.7e-33
Identity = 58/98 (59.18%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 8   RLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVH 67
           R YSC +CR H+A HDD+ISK+FQG  GRA+LF+  +N+  GP E+R L+TGLH VAD+H
Sbjct: 19  RRYSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIH 78

Query: 68  CVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDN 106
           C +C+  LGWKYE+A+E+SQKYKEGK+I+E + +++DN
Sbjct: 79  CENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKDN 116

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TrEMBL
Match: A0A0A0KQ44_CUCSA (Protein yippee-like OS=Cucumis sativus GN=Csa_5G139240 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-57
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAELLGPRLYSCCNCRNHVA HDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL
Sbjct: 1   MAELLGPRLYSCCNCRNHVAFHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW
Sbjct: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TrEMBL
Match: B9RPI2_RICCO (Protein yippee-like OS=Ricinus communis GN=RCOM_1377480 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.2e-54
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MA+L+GPRLYSCCNCRNHV+LHDDIISKAFQGRHGRAFLFSHAMNI VGPKEDRHLMTGL
Sbjct: 1   MADLVGPRLYSCCNCRNHVSLHDDIISKAFQGRHGRAFLFSHAMNIVVGPKEDRHLMTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVADVHC DC EVLGWKYERAYEASQKYKEGKFILEKSKIV++NW
Sbjct: 61  HTVADVHCADCCEVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TrEMBL
Match: A0A067JXD2_JATCU (Protein yippee-like OS=Jatropha curcas GN=JCGZ_20124 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-53
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAEL+GPRLYSCCNCRNHV+LHDDIISKAFQGRHGRAFLFSHAMNI VGPKEDRHL+TGL
Sbjct: 1   MAELVGPRLYSCCNCRNHVSLHDDIISKAFQGRHGRAFLFSHAMNIVVGPKEDRHLITGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVAD++C DCREVLGWKY+RAYEASQKYKEGKFI EKSKIV++NW
Sbjct: 61  HTVADIYCADCREVLGWKYKRAYEASQKYKEGKFIFEKSKIVKENW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TrEMBL
Match: B9GK91_POPTR (Protein yippee-like OS=Populus trichocarpa GN=POPTR_0001s11220g PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.1e-53
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAE++GPRLYSCCNCRNHVALHDD+ISKAFQGRHGRAFLFSHAMN+ VGPKEDRHLMTGL
Sbjct: 1   MAEVVGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNVMVGPKEDRHLMTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVADV C DCREVLGWKYERAYE +QKYKEGKFILEKSKIV++NW
Sbjct: 61  HTVADVSCSDCREVLGWKYERAYEETQKYKEGKFILEKSKIVKENW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TrEMBL
Match: A5BLB6_VITVI (Protein yippee-like OS=Vitis vinifera GN=VIT_16s0098g01390 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 7.9e-53
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAEL GPRLYSCCNCRNHV+LHDDI+SKAFQGRHGRAFLFSHAMNI VGPKEDR L TGL
Sbjct: 1   MAELTGPRLYSCCNCRNHVSLHDDIVSKAFQGRHGRAFLFSHAMNIGVGPKEDRQLTTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVAD+HC DCR+VLGWKYERAYEASQKYKEGKFILEKSKIV++NW
Sbjct: 61  HTVADIHCADCRQVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TAIR10
Match: AT4G27745.1 (AT4G27745.1 Yippee family putative zinc-binding protein)

HSP 1 Score: 199.5 bits (506), Expect = 1.0e-51
Identity = 88/106 (83.02%), Postives = 97/106 (91.51%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MA+ +GPRLYSCCNCRNHV LHDDIISKAFQGR GRAFLFSHAMNI VGPKEDR+L+TGL
Sbjct: 1   MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVAD+ CVDC E LGWKYERAYE SQKYKEGKFI EK+KIV+++W
Sbjct: 61  HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TAIR10
Match: AT3G08990.1 (AT3G08990.1 Yippee family putative zinc-binding protein)

HSP 1 Score: 127.1 bits (318), Expect = 6.4e-30
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 9   LYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHC 68
           +YSC  C+ H A+ +DIISK+F  +HGRA+LF + +N+TVG KE R ++TG HTVAD+ C
Sbjct: 13  VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMITGWHTVADIFC 72

Query: 69  VDCREVLGWKYERAYEASQKYKEGKFILEKSKIV 103
           V C  ++GWKYE AY+ SQKYKEGKFILE+ K++
Sbjct: 73  VSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVL 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TAIR10
Match: AT3G11230.2 (AT3G11230.2 Yippee family putative zinc-binding protein)

HSP 1 Score: 126.7 bits (317), Expect = 8.4e-30
Identity = 52/92 (56.52%), Postives = 73/92 (79.35%), Query Frame = 1


Query: 10  YSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHCV 69
           YSC +C+ ++AL DD++SK+FQ RHG+A+LFS  +N+  G KEDR +MTG+HTV D++CV
Sbjct: 47  YSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMMMTGMHTVVDIYCV 106

Query: 70  DCREVLGWKYERAYEASQKYKEGKFILEKSKI 102
            C   +GWKYE A+E +QKYKEGK +LE+ K+
Sbjct: 107 KCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 138

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TAIR10
Match: AT2G40110.1 (AT2G40110.1 Yippee family putative zinc-binding protein)

HSP 1 Score: 124.0 bits (310), Expect = 5.5e-29
Identity = 50/94 (53.19%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 8   RLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVH 67
           ++YSC +C+ H+A ++DIISK+F  +HG+A+LF+   N+++G  E+R +MTG HTVAD+ 
Sbjct: 12  KIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLMMTGKHTVADIF 71

Query: 68  CVDCREVLGWKYERAYEASQKYKEGKFILEKSKI 102
           CV C  ++GWKYE A+E +QKYKEGK +LE+ KI
Sbjct: 72  CVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKI 105

[Close]

BLAST of Cp4.1LG05g05940.1 vs. TAIR10
Match: AT5G53940.1 (AT5G53940.1 Yippee family putative zinc-binding protein)

HSP 1 Score: 121.3 bits (303), Expect = 3.5e-28
Identity = 50/95 (52.63%), Postives = 75/95 (78.95%), Query Frame = 1


Query: 8   RLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVH 67
           R Y C  CR H+AL DD++S++F  R G+A+LF+ ++NI++GP E+R +++G+HTVAD+ 
Sbjct: 12  RSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMHTVADIF 71

Query: 68  CVDCREVLGWKYERAYEASQKYKEGKFILEKSKIV 103
           C  C + +GWKYE A+E +QKYKEGKF+LE+ +IV
Sbjct: 72  CCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIV 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. NCBI nr
Match: gi|449456411|ref|XP_004145943.1| (PREDICTED: protein yippee-like At4g27745 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 2.0e-57
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAELLGPRLYSCCNCRNHVA HDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL
Sbjct: 1   MAELLGPRLYSCCNCRNHVAFHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW
Sbjct: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. NCBI nr
Match: gi|1000974111|ref|XP_015572669.1| (PREDICTED: protein yippee-like At4g27745 isoform X2 [Ricinus communis])

HSP 1 Score: 218.8 bits (556), Expect = 4.6e-54
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MA+L+GPRLYSCCNCRNHV+LHDDIISKAFQGRHGRAFLFSHAMNI VGPKEDRHLMTGL
Sbjct: 1   MADLVGPRLYSCCNCRNHVSLHDDIISKAFQGRHGRAFLFSHAMNIVVGPKEDRHLMTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVADVHC DC EVLGWKYERAYEASQKYKEGKFILEKSKIV++NW
Sbjct: 61  HTVADVHCADCCEVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. NCBI nr
Match: gi|802709143|ref|XP_012084536.1| (PREDICTED: protein yippee-like At4g27745 [Jatropha curcas])

HSP 1 Score: 215.7 bits (548), Expect = 3.9e-53
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAEL+GPRLYSCCNCRNHV+LHDDIISKAFQGRHGRAFLFSHAMNI VGPKEDRHL+TGL
Sbjct: 1   MAELVGPRLYSCCNCRNHVSLHDDIISKAFQGRHGRAFLFSHAMNIVVGPKEDRHLITGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVAD++C DCREVLGWKY+RAYEASQKYKEGKFI EKSKIV++NW
Sbjct: 61  HTVADIYCADCREVLGWKYKRAYEASQKYKEGKFIFEKSKIVKENW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. NCBI nr
Match: gi|1012215679|ref|XP_015934375.1| (PREDICTED: protein yippee-like At4g27745 [Arachis duranensis])

HSP 1 Score: 215.3 bits (547), Expect = 5.1e-53
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAEL+GPRLYSCCNCRNHV+LHDDIISKAFQGR+GRAFLFSHAMN+  GPKEDRHLMTGL
Sbjct: 1   MAELIGPRLYSCCNCRNHVSLHDDIISKAFQGRNGRAFLFSHAMNVVTGPKEDRHLMTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVADV+C DCREVLGWKYE+AYEASQKYKEGKFILEKSKIVR+NW
Sbjct: 61  HTVADVYCGDCREVLGWKYEKAYEASQKYKEGKFILEKSKIVRENW 106

[Close]

BLAST of Cp4.1LG05g05940.1 vs. NCBI nr
Match: gi|224053739|ref|XP_002297955.1| (Yippee-like family protein [Populus trichocarpa])

HSP 1 Score: 214.5 bits (545), Expect = 8.7e-53
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MAELLGPRLYSCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGL 60
           MAE++GPRLYSCCNCRNHVALHDD+ISKAFQGRHGRAFLFSHAMN+ VGPKEDRHLMTGL
Sbjct: 1   MAEVVGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNVMVGPKEDRHLMTGL 60

Query: 61  HTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 107
           HTVADV C DCREVLGWKYERAYE +QKYKEGKFILEKSKIV++NW
Sbjct: 61  HTVADVSCSDCREVLGWKYERAYEETQKYKEGKFILEKSKIVKENW 106

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g05940.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YIPL6_ARATH	1.8e-50	83.02	Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2	[more]
YPEL3_MOUSE	7.7e-33	59.18	Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=1 SV=1	[more]
YPEL3_BOVIN	7.7e-33	59.18	Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 SV=2	[more]
YPEL3_CHLAE	7.7e-33	59.18	Protein yippee-like 3 OS=Chlorocebus aethiops GN=YPEL3 PE=3 SV=1	[more]
YPEL3_HUMAN	7.7e-33	59.18	Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=2 SV=1	[more]

BLAST of Cp4.1LG05g05940.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ44_CUCSA	1.4e-57	99.06	Protein yippee-like OS=Cucumis sativus GN=Csa_5G139240 PE=3 SV=1	[more]
B9RPI2_RICCO	3.2e-54	92.45	Protein yippee-like OS=Ricinus communis GN=RCOM_1377480 PE=3 SV=1	[more]
A0A067JXD2_JATCU	2.7e-53	89.62	Protein yippee-like OS=Jatropha curcas GN=JCGZ_20124 PE=3 SV=1	[more]
B9GK91_POPTR	6.1e-53	89.62	Protein yippee-like OS=Populus trichocarpa GN=POPTR_0001s11220g PE=3 SV=1	[more]
A5BLB6_VITVI	7.9e-53	89.62	Protein yippee-like OS=Vitis vinifera GN=VIT_16s0098g01390 PE=3 SV=1	[more]

BLAST of Cp4.1LG05g05940.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27745.1	1.0e-51	83.02	Yippee family putative zinc-binding protein	[more]
AT3G08990.1	6.4e-30	58.51	Yippee family putative zinc-binding protein	[more]
AT3G11230.2	8.4e-30	56.52	Yippee family putative zinc-binding protein	[more]
AT2G40110.1	5.5e-29	53.19	Yippee family putative zinc-binding protein	[more]
AT5G53940.1	3.5e-28	52.63	Yippee family putative zinc-binding protein	[more]

BLAST of Cp4.1LG05g05940.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456411\|ref\|XP_004145943.1\|	2.0e-57	99.06	PREDICTED: protein yippee-like At4g27745 [Cucumis sativus]	[more]
gi\|1000974111\|ref\|XP_015572669.1\|	4.6e-54	92.45	PREDICTED: protein yippee-like At4g27745 isoform X2 [Ricinus communis]	[more]
gi\|802709143\|ref\|XP_012084536.1\|	3.9e-53	89.62	PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]	[more]
gi\|1012215679\|ref\|XP_015934375.1\|	5.1e-53	90.57	PREDICTED: protein yippee-like At4g27745 [Arachis duranensis]	[more]
gi\|224053739\|ref\|XP_002297955.1\|	8.7e-53	89.62	Yippee-like family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004910	Yippee/Mis18/Cereblon

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g05940	Cp4.1LG05g05940	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05940.1	Cp4.1LG05g05940.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05940.1:five_prime_utr:001	Cp4.1LG05g05940.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG05g05940.1:five_prime_utr:002	Cp4.1LG05g05940.1:five_prime_utr:002	five_prime_UTR
Cp4.1LG05g05940.1:five_prime_utr:003	Cp4.1LG05g05940.1:five_prime_utr:003	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05940.1:cds:001	Cp4.1LG05g05940.1:cds:001	CDS
Cp4.1LG05g05940.1:cds:002	Cp4.1LG05g05940.1:cds:002	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05940.1:three_prime_utr:001	Cp4.1LG05g05940.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004910	Yippee/Mis18/Cereblon	PFAM	PF03226	Yippee-Mis18	coord: 10..101 score: 1.4
None	No IPR available	PANTHER	PTHR13848	FAMILY NOT NAMED	coord: 1..106 score: 7.0
None	No IPR available	PANTHER	PTHR13848:SF9	SUBFAMILY NOT NAMED	coord: 1..106 score: 7.0