Cp4.1LG05g05440.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g05440.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Non-structural maintenance of chromosomes element 1 like
Location	Cp4.1LG05 : 3245111 .. 3249750 (+)
Sequence length	2108

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCCTCCCACCATGTAAAAGCGGCTATCCAGCGCTAGGCTTCACTTCCCGGAGAGTCTTTGAAAATTTTCCCGCACAAACTCTTCTCTTCTATGAGTTTGGCTGAAATTCCCTTACAGAATCAACCTTGTCTGAATCTTTGAAGTATTAGTTGACCTTGAATTAGGGTTCAGAATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGGTTTTAATTTCTTTCTCCTTCCCCAGTTTGGTATTCAAGTTGGGAAGTAATGATTTAACGGTATGGAGACCTGCTCGATTTTTTTCTAACAAATGATCGAGGATGTCTTTCTTAGATCATCTGTAAAAGATGCGTTTGAGTTCTTATAAATTCATGTTCAAAGATTACCGAATATTTGCAATAGAATGGTTTCTGAGTATAATATGGAACCACATATTGGAAGAAATTGCATCTGGGTTCATATCCGTATACGTTTTGGAAATGTGTATTCTTATATCTTTCCTTAATCATTAGCATAAACGATTGAAAAGGAAGAGTGTTTTTAATTGATAAATTGGCCGACGGTTGAAAACTAAGATCTGTTCGATGTTTATTTTGGTGCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTAGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTGAGTTATCAACTATGGGAAGTATTGGCGTTCTTCAATAAACTGACCATTCTGCCAATTTGCTTAGCAATTAACTATGGGAACTTAGTGTTTACAATATATGCATCTTTTGTTTTATTGTCGTAGTATTTCTTATAAACAAAAAATTGCTATGTCAGGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGGTTCCTCTTGCTTGTATATGACCAATATTACCGTTTTGAGTCTATTATTGTCAAAGTCAGCTGCATATTTAACTAAGGTTGGCATCTTTGGTCTTTTGCCTCGTAAATAAGACTAATTCCAGTCACCGTTTATATAGCGTACTGTGGACAAGAACTCTTTGGAATGAGTTTGTGAGATCCCACATCGTCTAGAGAGAGGAACGAGTGTCAGTGAGGACGTTGGGTCTTGAACGGGGTGGATTGTGAGATCCAACATCGGTTGTAAAGGGGAACAAAACATTCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGTGTTTTAAAATCCTTGAGGGAAAGCCCAAAAAGGAAAAGTCAAAAAAGACAATACCTGCTAGAGGTGGGATTGGGCTGTTAGAGGGTTCTACAAGAGTATCATTTGATCTTTAGCTTATATCATTTATAGAAAGGTACACTAGTTCTTAAATTATGATTTGATACGAGTCACATTCTTCTTGAATTTAAATATTGCCAATGGAGTGCCAAGAGTTTTCTACATGGTAAAGGCTCGTAACTTATCGATCAAAATTGGATAATGGGACTGTTAGTCCGACAGTGGCATGAATGCCTTTAGAAAATATTGATACATTCACTTCTTTGTGGCCACTTCAATTAAATTTGCCTAGGAGTCACTCTCAAGTTTGTTATTTTCACTTCTTTCTTTTCCAATACCTGAATTTTTATAATTGTTAAATTTGAGACTAAGAATTTAAGGCCACACTTAAACTCTACACAATTTTGTTGCAATGCTTCTGATTTGCCCCCATTGTGGGTAAAATTGAGAACTGACAAAATCTTCCAGCTCCTCGTATTACTCTCTTTGTAGGTCTTTTCTGCTTTTTACCATATCTAAGAATCCTATTGTATAATATTCGTATCATTGTTTAACTGTTACTATTTTATCACTACCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGCTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGTTCTCTTCTTTTATGCCATTTTTGTGATTTACTAAGTCAATTCTCATTTTATCTCAATTTTTTGCATTGCATTATTTTCCCCTATGCCCACACTGATAGGAGAAGCTGAACATTTGATGAAAAGGATTTTATGTTGACAGTGCAATTGGTCTGGATTTCAACATGATCCAAACTCCGTATCGTTTTTACTCTAAAGAACCTTAACAAACCTTATTTCCTTGATGATTTATATGTTTGCTGGACTTGTTATTCACAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGGTTATATGATGTGGTACCTTCCTAATTTAATCTTTTGATCTGCAAGATCTCTTGTTCCTAACAGTTCTTTAATGGACTATTATTTAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTAAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCAGCACAAGCTTCCCAACCTCCTCCAGATACAAGAAGAATAACACGAAGTACTGCACACCAGCGGTAGGCGCTTGAAATGAGGTACGGTTATTTTGATATAGTTTCATGGATCCTAGTCCAGGAGTTGTGAAGTGTGCTGCAACTGCACCTTTTGATGTATTGTGTCAAAATTATCATCATATTCATATTTAATTGAATTTGTTGTTTTCTCGTACACAGAATTGGAATGTAAAGTGCATTACACAGCGTAAGCCAAAAGTAAGTTTCTTTTTTTTTTCTTTTCTTTTCTTTCTTTTAATCTCTTGTAAACTATAGCAGTATTCTCCATTCTTGTCGTCCACACATGCAACGAGCTGTTCCATTGTAATGATTTTTTTTTCTTTTTGTACCTAGGATATTTTGATTGTATTGAGAGTATAAATAGGTTCAATATCCTTTAAATATCCCAAATTGCAGTAACAGGCTTGACCTGCTACCAAACCTACCGCTAAAAGATATTGTCATCTTTGGGTTTTCCCATTTAAGGTTCCGCTCAAGTTTTTAAAATGCGTCTGCTAGGGAGAGTTTTTCACACCCTTATAAAGAATGTTTCGTTTCCCTCTCCAACCGATGAGGGATCTAACACCTTATTTATTTATTTTATTGTGAATGAGTGTCCGAGCCAACTTGTGTCACTGTAGAATCACAAAAAACTGTTTTGACTTTACTACATTTGGTTATTACAGAAACACGTTAGATCTAAATTTTAAGTATGTGAGTACCATTGAACTTGTTAACTCAGAAATGGTTAACTGTAGCCTCTTTATTTAACAGGTATTATGCTTTTCGGTGGTGTTATGATGAACAGTTAAACATGTATGATGGGTCTGGATTGTGTAAAAAGGTATGCAGCTCAATGCTGAAAATTTGACCGTTCATCATATTTACTATGTTTAGATTTAAGGATAAATATATCCACTCTAGAGGAGTCATAATTAAGCTGTTTAAATAGTGAGAACAAATTAGAGCACTCTGGAGAAGTCATAATAGCAGTGACATGAGATAAAAGTGGCGTCTTTGAACTGTTGTGAATAGAATCGATTATGAAACTTTAGATGGTGGGAAAGTGAAGCAATGAAAAGAATATGGCTACATGTTTTGTCTTTTTTATATAATTAGATTATCTGAATTCATTACAAAAATGTCCCTTTATGAAGCTGACTTGGCTGTGAAAGGAGAGTTTGATCTAATTAGCATCTCGTGAATAACCTTCAATCATTCCAACTAAGCTGCAGTAGGTTCCTGGTCTTTAAAGGAAGAACACATGTTACTGTAACAGTCGAAGTCTACTGCTAGTCGATATTGTATTTTTTGGACTTTTTCTTTCAGGCTTCCCCTCAAGAATTTCAAAACGCGTCTGCTAGGGAGAGGTTTCCACACACTTATAAATAATGTTTCTTTGTCCTCCCAACCGATGTGGGATCTTACAATCCATTGGGTTATGCTAATTTTTATTCTTTTTAGTTCAACAATACGTTAGGTGAAGGATTTAAACCTTTACTCTCTTGGTCGATGATACATGTTTTATATCAGTTGAATTTTATTCTTATTAGTGGGCTATGCTCACTAGAGAACGACGACTAGAACGACGAAACATCTGATGGGACGTGAGTGGATGCTTTGATGTCCTAAGGGCACACATGGCCTAAGCTTCTCAGCATTGTGGTTTGTGTCATTTGTACGACCTCTGTTTTTAAGCTTTTACCTTGT

mRNA sequence

TATCCTCCCACCATGTAAAAGCGGCTATCCAGCGCTAGGCTTCACTTCCCGGAGAGTCTTTGAAAATTTTCCCGCACAAACTCTTCTCTTCTATGAGTTTGGCTGAAATTCCCTTACAGAATCAACCTTGTCTGAATCTTTGAAGTATTAGTTGACCTTGAATTAGGGTTCAGAATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTAGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGCTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTAAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCAGCACAAGCTTCCCAACCTCCTCCAGATACAAGAAGAATAACACGAAGTACTGCACACCAGCGGTAGGCGCTTGAAATGAGAATTGGAATGTAAAGTGCATTACACAGCGTAAGCCAAAAGTATTATGCTTTTCGGTGGTGTTATGATGAACAGTTAAACATGTATGATGGGTCTGGATTGTGTAAAAAGGTATGCAGCTCAATGCTGAAAATTTGACCGTTCATCATATTTACTATGTTTAGATTTAAGGATAAATATATCCACTCTAGAGGAGTCATAATTAAGCTGTTTAAATAGTGAGAACAAATTAGAGCACTCTGGAGAAGTCATAATAGCAGTGACATGAGATAAAAGTGGCGTCTTTGAACTGTTGTGAATAGAATCGATTATGAAACTTTAGATGGTGGGAAAGTGAAGCAATGAAAAGAATATGGCTACATGTTTTGTCTTTTTTATATAATTAGATTATCTGAATTCATTACAAAAATGTCCCTTTATGAAGCTGACTTGGCTGTGAAAGGAGAGTTTGATCTAATTAGCATCTCGTGAATAACCTTCAATCATTCCAACTAAGCTGCAGTAGGTTCCTGGTCTTTAAAGGAAGAACACATGTTACTGTAACAGTCGAAGTCTACTGCTAGTCGATATTGTATTTTTTGGACTTTTTCTTTCAGGCTTCCCCTCAAGAATTTCAAAACGCGTCTGCTAGGGAGAGGTTTCCACACACTTATAAATAATGTTTCTTTGTCCTCCCAACCGATGTGGGATCTTACAATCCATTGGGTTATGCTAATTTTTATTCTTTTTAGTTCAACAATACGTTAGGTGAAGGATTTAAACCTTTACTCTCTTGGTCGATGATACATGTTTTATATCAGTTGAATTTTATTCTTATTAGTGGGCTATGCTCACTAGAGAACGACGACTAGAACGACGAAACATCTGATGGGACGTGAGTGGATGCTTTGATGTCCTAAGGGCACACATGGCCTAAGCTTCTCAGCATTGTGGTTTGTGTCATTTGTACGACCTCTGTTTTTAAGCTTTTACCTTGT

Coding sequence (CDS)

ATGCGGGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTTCTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTTGCTGTTTACGCGGATCACTGAAAAGAGTCCAGATAATGACCGGCAGCTTTTTAATAATTACCTCCTGACGATGAACAAAGCACTTTCTTTTGCTCAATTTGAGTTGCGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCCGATGAACAATCCAAGCTAGGAACAAAGTATTCAGTTCCACAGATTGCCTTTTATAAAGCCATTGTTGAAGCAATTGCACAAGATCCATCTGCTCAAGGTGGAATATCCAACATTGCTGCTCTTCATCTGCAGTTGGAAAATCAGCTGGGGGATGCAGGGTCCCAGTCCCATGTCATACCACCTGCTTTCAAGAATTTCTCAATATCTCTCAAGGAAAAAACAATCGCCGAGCTTGCTCAGGATCAGTGGCTTAATTGCACCCCTGATGGCTTTGTAAATTTGGGTGTCAGATCATTTCTTGATTTGCGAAGTTGGTTCCGCACTAATGACATACCTTCATGTGAAGTGTGCAATGAAGCTGGAGTGAAGGCAGAGTTGTGTAGTAATGAAGGCTGCACTGTTCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCTTGCCCAAGTTGTGGCACTCAATGGCGATCTACAGCACCCAATGTGGAGTTCAAGGAGGAAGAGGATGAGCCAGATGCGCGCATTCAAGGCCAGTCATCATCACATAAGAGGAAGAAAACCAGATTAAACAGAGATATTGATTCAGGACCAAATGGAGACAGTGTGGCTGCAGCACAAGCTTCCCAACCTCCTCCAGATACAAGAAGAATAACACGAAGTACTGCACACCAGCGGTAG

Protein sequence

MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNIAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPPPDTRRITRSTAHQR

Homology

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BLAST of Cp4.1LG05g05440.1 vs. TrEMBL
Match: A0A0A0KZ19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269750 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 5.3e-145
Identity = 260/314 (82.80%), Postives = 284/314 (90.45%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M ELSWRHHTLIQ+LL+RGPLRED FHLLF +IT K+PDND+Q+FN+YLLT+NKALSFAQ
Sbjct: 1   MPELSWRHHTLIQSLLSRGPLREDQFHLLFKQITGKTPDNDQQVFNSYLLTINKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSD+QSKLGTKYSVPQIA +KAIVEAIAQD SAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDDQSKLGTKYSVPQIALFKAIVEAIAQDSSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           I+AL+LQLENQLGD GSQS VIP AFKNFS S KEKTIAELAQD+WL+CTPDGFVNLGVR
Sbjct: 121 ISALNLQLENQLGDTGSQSQVIPAAFKNFSKSHKEKTIAELAQDKWLDCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFR+ND+PSCEVCNEAGVKAELCS E CTVRVH+YCLKKMLSNKKSK+ACP C
Sbjct: 181 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCSTEVCTVRVHQYCLKKMLSNKKSKKACPGC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GT+W+ST  N+E KEEEDEPD R Q Q SSHKRKK+RLN DID GPN DS   A+ASQPP
Sbjct: 241 GTRWQSTTSNIEPKEEEDEPDTRTQDQPSSHKRKKSRLNVDIDLGPNEDS--TAEASQPP 300

Query: 301 PDTRRITRSTAHQR 315
           P TRR TRS+A QR
Sbjct: 301 P-TRRTTRSSARQR 311

[Close]

BLAST of Cp4.1LG05g05440.1 vs. TrEMBL
Match: M5WH05_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008870mg PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 7.7e-104
Identity = 197/316 (62.34%), Postives = 240/316 (75.95%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M EL+WRH T+IQALL+RGPL+ED FH +FT +T K+P +DRQ F+++LL +NKALS+ Q
Sbjct: 1   MTELNWRHQTVIQALLSRGPLKEDQFHRIFTGLTGKTPGSDRQRFDDFLLKINKALSYVQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCR QYDG+VYYG+VNNVSDE+SKLGTKYSV QIAFYKAI+EAI QD +AQG ISN
Sbjct: 61  FELRGCRFQYDGQVYYGVVNNVSDEESKLGTKYSVAQIAFYKAIIEAIVQDGAAQGTISN 120

Query: 121 IAALHLQLENQ-LGDAGSQSH----VIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFV 180
           I AL+L+LENQ L    SQSH     +PPA KNFSIS+KEKT+ EL QDQWL+ TPD ++
Sbjct: 121 IDALNLRLENQVLMGTTSQSHGGLPHVPPALKNFSISMKEKTLDELVQDQWLSVTPDNYI 180

Query: 181 NLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKR 240
            LGVRSFLDLRSWFR+ND+P+CEVCNEAGVKA LC  EGC  R+H YCLKK+ S +K +R
Sbjct: 181 GLGVRSFLDLRSWFRSNDVPACEVCNEAGVKAALCQKEGCIARIHEYCLKKLFSERKGER 240

Query: 241 ACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQ 300
            CPSCGTQW+ T    E   E+DEP+   Q Q     +KK     +I    +GD   ++Q
Sbjct: 241 VCPSCGTQWQYTVTKAE-AVEDDEPNYPTQSQPPVGPKKKRLRRNEIG---DGDISGSSQ 300

Query: 301 ASQP-PPDTRRITRST 311
           AS P  P+ RR TRS+
Sbjct: 301 ASLPGGPNLRRSTRSS 312

[Close]

BLAST of Cp4.1LG05g05440.1 vs. TrEMBL
Match: D7T1H8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01590 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 6.7e-100
Identity = 192/318 (60.38%), Postives = 234/318 (73.58%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M +LSWRHH LIQALL+RGPL ED FH +F+ +T K+P   +Q FN+YLL +NK LS+  
Sbjct: 1   MPDLSWRHHALIQALLSRGPLIEDDFHAIFSGVTGKNPGAHQQQFNDYLLKINKELSYVH 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
            ELRGCRNQYDG+VYYG+VNNVSDEQSKLGTKY+VPQ+AFYK I+EAI QD +AQG IS+
Sbjct: 61  LELRGCRNQYDGKVYYGVVNNVSDEQSKLGTKYTVPQLAFYKGIIEAIVQDVTAQGSISD 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPP----AFKNFSISLKEKTIAELAQDQWLNCTPDGFVN 180
           I AL+++LENQ+    S S  IPP    AFKNFSIS KEKT+ EL QDQWL+ TPDG + 
Sbjct: 121 IDALNIRLENQVLTGTSHSQGIPPNVPAAFKNFSISQKEKTLDELVQDQWLSSTPDGKIR 180

Query: 181 LGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRA 240
           LGVRSFLDLRSWF  ND+PSC+VCNEAGVKAELC NEGC VR+H YCLKK  S ++ +R 
Sbjct: 181 LGVRSFLDLRSWFHNNDVPSCDVCNEAGVKAELCRNEGCMVRIHLYCLKKKFSQRRVERV 240

Query: 241 CPSCGTQWRSTAPNVEFKEEEDEPDARIQGQ---SSSHKRKKTRLNRDIDSGPNGDSVAA 300
           CP CGTQW++ A   +  EEEDEP    Q Q    ++  RK+ R  +  D G NG   ++
Sbjct: 241 CPGCGTQWQN-ASITDAIEEEDEPSRPSQRQPPPPAAATRKRLRSCKTED-GENGGPSSS 300

Query: 301 AQASQPPPDTRRITRSTA 312
             +     D RRITR++A
Sbjct: 301 QTSVPVSTDFRRITRNSA 316

[Close]

BLAST of Cp4.1LG05g05440.1 vs. TrEMBL
Match: A0A059ABA4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00626 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.9e-94
Identity = 187/322 (58.07%), Postives = 227/322 (70.50%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M EL+ RH  LIQAL++RGPL E  FH +F  +  K P + +QLFNNYLL +NK LS  Q
Sbjct: 1   MPELTDRHKVLIQALISRGPLSEKDFHAVFNGVAGKHPADHQQLFNNYLLKINKELSHVQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
            ELRGCR+Q DGRV+YG VNNV+D+QS+LGTKYSVPQIAFYK IVEAI QD +AQG IS+
Sbjct: 61  CELRGCRDQNDGRVFYGFVNNVADDQSELGTKYSVPQIAFYKCIVEAIVQDATAQGCISD 120

Query: 121 IAALHLQLENQ-LGDAGSQSH----VIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFV 180
           I AL+++LENQ L  A  QS      +PPAF+NFSIS KEKT+ +L +D+WL    DG +
Sbjct: 121 IDALNIRLENQMLNGAVPQSQDNSLSVPPAFRNFSISQKEKTLEQLVRDKWLFSDSDGKI 180

Query: 181 NLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKR 240
            LG+RSFLDLRSWFR+NDIPSCEVCNEA +KAELC N+ C +R+H+YCLKK  S KK++R
Sbjct: 181 GLGLRSFLDLRSWFRSNDIPSCEVCNEAAIKAELCPNDDCNIRIHQYCLKKRFSQKKAER 240

Query: 241 ACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSH-KRKKTRLNRDIDSGPNGDSVAAA 300
            CPSCG QWR   P  E  EEED  D +IQ Q     KRKK R      +  N D++   
Sbjct: 241 VCPSCGQQWRCVLPKAEEIEEEDAQDVQIQSQPVPRPKRKKLRSG----AATNADTLLPT 300

Query: 301 QASQPP--PDTRRITRSTAHQR 315
            +   P  PD RR TRS+A  R
Sbjct: 301 SSQDAPNGPDFRRTTRSSARLR 318

[Close]

BLAST of Cp4.1LG05g05440.1 vs. TrEMBL
Match: A0A067L363_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23843 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 2.1e-93
Identity = 179/320 (55.94%), Postives = 229/320 (71.56%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M  L+W+HHTLIQ L+ RGPL+E+ F  +FT +T K P +  + FN++LL +NK LS+ Q
Sbjct: 1   MAVLNWKHHTLIQVLMTRGPLKENEFQKIFTGVTGKHPRSCERDFNDFLLKINKELSYVQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
            ELR CRNQ DG V YGLVNNVSDEQSKLGTKYSVPQIA YK ++EAI QD +AQG IS 
Sbjct: 61  MELRLCRNQNDGEVCYGLVNNVSDEQSKLGTKYSVPQIALYKGVIEAIVQDATAQGSIST 120

Query: 121 IAALHLQLENQL-GDAGSQSH----VIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFV 180
           I AL+++LE+Q+ G  GSQS      +PPA +NFS+S KEKT+ EL +D+WL  TPDG +
Sbjct: 121 IDALNIRLESQVHGGTGSQSQGGLSQVPPALRNFSMSQKEKTLDELVRDKWLCHTPDGHI 180

Query: 181 NLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKR 240
            LGVRS+LDLRS F  + IPSCEVCNEA +KA++C NEGC +R+H YCLKK LS ++ K 
Sbjct: 181 GLGVRSYLDLRSLFHNSGIPSCEVCNEAAIKAKVCQNEGCALRIHHYCLKKKLSQRRGKI 240

Query: 241 ACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQ-SSSHKRKKTRLNRDIDSGPNGDSVAAA 300
            CP+CG QW    P  E  E EDEP+ +I+   S+  KRK+ + NR+ D+   G    ++
Sbjct: 241 VCPTCGIQWDCEVPECEAVEGEDEPNEQIESHPSAGSKRKRHKANRNTDADTVG--CTSS 300

Query: 301 QASQPPPDTRRITRSTAHQR 315
           QASQ   D RR+TRS+A  R
Sbjct: 301 QASQSVSDLRRVTRSSARTR 318

[Close]

BLAST of Cp4.1LG05g05440.1 vs. TAIR10
Match: AT5G21140.1 (AT5G21140.1 embryo defective 1379)

HSP 1 Score: 343.2 bits (879), Expect = 1.7e-94
Identity = 175/316 (55.38%), Postives = 228/316 (72.15%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M  LSW+HHTLIQAL++RGPL+E  FH +FT +T ++P   +++F+ YLL +NK LS+  
Sbjct: 1   MASLSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVH 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FEL+ CR+QYDG+V YG+VNNV+D+QSKLGTKYSVPQIAF+K I+EAIAQD +AQG IS+
Sbjct: 61  FELKACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGIIEAIAQDEAAQGCISS 120

Query: 121 IAALHLQLENQL-GDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180
             AL+++LENQ+  +A S    +PPAFKNFS++ KEKT+ EL +D+WL  T +  + LG+
Sbjct: 121 FDALNIRLENQISSEASSSQQQVPPAFKNFSMTQKEKTLDELVRDKWLCRTRERNIGLGI 180

Query: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPS 240
           RS LDLRSWFR ND+PSCEVCNEAGVKA+LC  EGC VR+H+YCLKK+LS +  KR C  
Sbjct: 181 RSLLDLRSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLSQRDDKR-CSG 240

Query: 241 CGTQW-RSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQ 300
           CG  W  S     E  EE    +   + Q+++ K K+ R  R  DS  NG S  A+ AS 
Sbjct: 241 CGKPWPLSKITKTEAAEEAMNDEEESETQATAPKAKRRRQQR--DSTENGSS-QASLAST 300

Query: 301 PPPDTRRITRSTAHQR 315
              +TRR+TRS  H R
Sbjct: 301 SGANTRRVTRSVGHSR 312

[Close]

BLAST of Cp4.1LG05g05440.1 vs. NCBI nr
Match: gi|659097871|ref|XP_008449859.1| (PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Cucumis melo])

HSP 1 Score: 529.6 bits (1363), Expect = 3.6e-147
Identity = 260/314 (82.80%), Postives = 285/314 (90.76%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M ELSWRHHTLIQ+LL+RGPLRED FHLLF RIT K+PDND+Q+FN+YLLT+NKALSFAQ
Sbjct: 1   MPELSWRHHTLIQSLLSRGPLREDQFHLLFKRITGKTPDNDQQVFNSYLLTINKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSD+QSKLGTKYSVPQIAF+KAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDDQSKLGTKYSVPQIAFFKAIVEAIAQDPSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           I+AL+LQLENQLGD G QS VIP AFKNFS S KEKTIAELAQD+WL+CTP+GFVNLGVR
Sbjct: 121 ISALNLQLENQLGDTGPQSQVIPAAFKNFSKSHKEKTIAELAQDKWLDCTPEGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFR+ND+PSCEVCNEAGVKAELCS+E CTVRVHRYCLKKMLSNKKSKRACP C
Sbjct: 181 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCSSEVCTVRVHRYCLKKMLSNKKSKRACPGC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GT+W+ST  N+E KEE DEPD R Q Q SSHKRKK++LN DID GPN DS   A+ASQPP
Sbjct: 241 GTRWQSTMSNIESKEEVDEPDTRTQDQPSSHKRKKSKLNVDIDLGPNEDST--AEASQPP 300

Query: 301 PDTRRITRSTAHQR 315
           PDTRR TR++  QR
Sbjct: 301 PDTRRATRNSTRQR 312

[Close]

BLAST of Cp4.1LG05g05440.1 vs. NCBI nr
Match: gi|778692853|ref|XP_004149665.2| (PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Cucumis sativus])

HSP 1 Score: 521.9 bits (1343), Expect = 7.6e-145
Identity = 260/314 (82.80%), Postives = 284/314 (90.45%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M ELSWRHHTLIQ+LL+RGPLRED FHLLF +IT K+PDND+Q+FN+YLLT+NKALSFAQ
Sbjct: 1   MPELSWRHHTLIQSLLSRGPLREDQFHLLFKQITGKTPDNDQQVFNSYLLTINKALSFAQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCRNQYDGRVYYGLVNNVSD+QSKLGTKYSVPQIA +KAIVEAIAQD SAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDDQSKLGTKYSVPQIALFKAIVEAIAQDSSAQGGISN 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGVR 180
           I+AL+LQLENQLGD GSQS VIP AFKNFS S KEKTIAELAQD+WL+CTPDGFVNLGVR
Sbjct: 121 ISALNLQLENQLGDTGSQSQVIPAAFKNFSKSHKEKTIAELAQDKWLDCTPDGFVNLGVR 180

Query: 181 SFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRACPSC 240
           SFLDLRSWFR+ND+PSCEVCNEAGVKAELCS E CTVRVH+YCLKKMLSNKKSK+ACP C
Sbjct: 181 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCSTEVCTVRVHQYCLKKMLSNKKSKKACPGC 240

Query: 241 GTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQASQPP 300
           GT+W+ST  N+E KEEEDEPD R Q Q SSHKRKK+RLN DID GPN DS   A+ASQPP
Sbjct: 241 GTRWQSTTSNIEPKEEEDEPDTRTQDQPSSHKRKKSRLNVDIDLGPNEDS--TAEASQPP 300

Query: 301 PDTRRITRSTAHQR 315
           P TRR TRS+A QR
Sbjct: 301 P-TRRTTRSSARQR 311

[Close]

BLAST of Cp4.1LG05g05440.1 vs. NCBI nr
Match: gi|595836842|ref|XP_007207339.1| (hypothetical protein PRUPE_ppa008870mg [Prunus persica])

HSP 1 Score: 385.2 bits (988), Expect = 1.1e-103
Identity = 197/316 (62.34%), Postives = 240/316 (75.95%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M EL+WRH T+IQALL+RGPL+ED FH +FT +T K+P +DRQ F+++LL +NKALS+ Q
Sbjct: 1   MTELNWRHQTVIQALLSRGPLKEDQFHRIFTGLTGKTPGSDRQRFDDFLLKINKALSYVQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCR QYDG+VYYG+VNNVSDE+SKLGTKYSV QIAFYKAI+EAI QD +AQG ISN
Sbjct: 61  FELRGCRFQYDGQVYYGVVNNVSDEESKLGTKYSVAQIAFYKAIIEAIVQDGAAQGTISN 120

Query: 121 IAALHLQLENQ-LGDAGSQSH----VIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFV 180
           I AL+L+LENQ L    SQSH     +PPA KNFSIS+KEKT+ EL QDQWL+ TPD ++
Sbjct: 121 IDALNLRLENQVLMGTTSQSHGGLPHVPPALKNFSISMKEKTLDELVQDQWLSVTPDNYI 180

Query: 181 NLGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKR 240
            LGVRSFLDLRSWFR+ND+P+CEVCNEAGVKA LC  EGC  R+H YCLKK+ S +K +R
Sbjct: 181 GLGVRSFLDLRSWFRSNDVPACEVCNEAGVKAALCQKEGCIARIHEYCLKKLFSERKGER 240

Query: 241 ACPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKRKKTRLNRDIDSGPNGDSVAAAQ 300
            CPSCGTQW+ T    E   E+DEP+   Q Q     +KK     +I    +GD   ++Q
Sbjct: 241 VCPSCGTQWQYTVTKAE-AVEDDEPNYPTQSQPPVGPKKKRLRRNEIG---DGDISGSSQ 300

Query: 301 ASQP-PPDTRRITRST 311
           AS P  P+ RR TRS+
Sbjct: 301 ASLPGGPNLRRSTRSS 312

[Close]

BLAST of Cp4.1LG05g05440.1 vs. NCBI nr
Match: gi|1009113846|ref|XP_015873366.1| (PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Ziziphus jujuba])

HSP 1 Score: 377.5 bits (968), Expect = 2.3e-101
Identity = 195/319 (61.13%), Postives = 236/319 (73.98%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M EL+WRH TLIQALL+RGPL+ED FH +FT +T K+P + +QLF+++LL +NK LS+ Q
Sbjct: 1   MPELTWRHQTLIQALLSRGPLKEDQFHRIFTGLTGKNPGSHQQLFDDFLLKINKELSYVQ 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
           FELRGCR+QYDG+VYYG+VNNVSDEQSKLGTKYSV QIAFYKAI+EAI QD +AQG IS+
Sbjct: 61  FELRGCRSQYDGQVYYGVVNNVSDEQSKLGTKYSVSQIAFYKAIIEAIVQDATAQGSISS 120

Query: 121 IAALHLQLENQL----GDAGSQSHVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVN 180
           I AL+L+LENQ+    G  G+  ++  PA +NFSIS KEK + EL  DQWLN   DG + 
Sbjct: 121 IDALNLRLENQVIIGTGSQGNGDYI--PALRNFSISQKEKALNELVLDQWLNVV-DGNIV 180

Query: 181 LGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRA 240
           LG+RSFLDLRSWFR NDIPSCEVCNEAGVKAELC NE C VR+H YCLKK+ S +K  R 
Sbjct: 181 LGIRSFLDLRSWFRNNDIPSCEVCNEAGVKAELCQNEACVVRIHNYCLKKLFSQRKGGRV 240

Query: 241 CPSCGTQWRSTAPNVEFKEEEDEPDARIQGQSSSHKR-KKTRLNRDIDSGPNGDSVAAAQ 300
           CPSCGTQW+   P +E  E +DEP+   Q Q     R K+ R N + +SGP       +Q
Sbjct: 241 CPSCGTQWK-YGPKLELVEHDDEPNMPTQSQPPPRPRIKRQRTNNETESGP-------SQ 300

Query: 301 ASQPPPDTRRITRSTAHQR 315
            SQP  D RR TRS+   R
Sbjct: 301 HSQPSSDMRRATRSSNRAR 308

[Close]

BLAST of Cp4.1LG05g05440.1 vs. NCBI nr
Match: gi|296083970|emb|CBI24358.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 372.1 bits (954), Expect = 9.7e-100
Identity = 192/318 (60.38%), Postives = 234/318 (73.58%), Query Frame = 1


Query: 1   MRELSWRHHTLIQALLARGPLREDHFHLLFTRITEKSPDNDRQLFNNYLLTMNKALSFAQ 60
           M +LSWRHH LIQALL+RGPL ED FH +F+ +T K+P   +Q FN+YLL +NK LS+  
Sbjct: 1   MPDLSWRHHALIQALLSRGPLIEDDFHAIFSGVTGKNPGAHQQQFNDYLLKINKELSYVH 60

Query: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120
            ELRGCRNQYDG+VYYG+VNNVSDEQSKLGTKY+VPQ+AFYK I+EAI QD +AQG IS+
Sbjct: 61  LELRGCRNQYDGKVYYGVVNNVSDEQSKLGTKYTVPQLAFYKGIIEAIVQDVTAQGSISD 120

Query: 121 IAALHLQLENQLGDAGSQSHVIPP----AFKNFSISLKEKTIAELAQDQWLNCTPDGFVN 180
           I AL+++LENQ+    S S  IPP    AFKNFSIS KEKT+ EL QDQWL+ TPDG + 
Sbjct: 121 IDALNIRLENQVLTGTSHSQGIPPNVPAAFKNFSISQKEKTLDELVQDQWLSSTPDGKIR 180

Query: 181 LGVRSFLDLRSWFRTNDIPSCEVCNEAGVKAELCSNEGCTVRVHRYCLKKMLSNKKSKRA 240
           LGVRSFLDLRSWF  ND+PSC+VCNEAGVKAELC NEGC VR+H YCLKK  S ++ +R 
Sbjct: 181 LGVRSFLDLRSWFHNNDVPSCDVCNEAGVKAELCRNEGCMVRIHLYCLKKKFSQRRVERV 240

Query: 241 CPSCGTQWRSTAPNVEFKEEEDEPDARIQGQ---SSSHKRKKTRLNRDIDSGPNGDSVAA 300
           CP CGTQW++ A   +  EEEDEP    Q Q    ++  RK+ R  +  D G NG   ++
Sbjct: 241 CPGCGTQWQN-ASITDAIEEEDEPSRPSQRQPPPPAAATRKRLRSCKTED-GENGGPSSS 300

Query: 301 AQASQPPPDTRRITRSTA 312
             +     D RRITR++A
Sbjct: 301 QTSVPVSTDFRRITRNSA 316

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g05440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g05440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ19_CUCSA	5.3e-145	82.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269750 PE=4 SV=1	[more]
M5WH05_PRUPE	7.7e-104	62.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008870mg PE=4 SV=1	[more]
D7T1H8_VITVI	6.7e-100	60.38	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01590 PE=4 SV=...	[more]
A0A059ABA4_EUCGR	1.9e-94	58.07	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00626 PE=4 SV=1	[more]
A0A067L363_JATCU	2.1e-93	55.94	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23843 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g05440.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21140.1	1.7e-94	55.38	embryo defective 1379	[more]

BLAST of Cp4.1LG05g05440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097871\|ref\|XP_008449859.1\|	3.6e-147	82.80	PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Cucumis ...	[more]
gi\|778692853\|ref\|XP_004149665.2\|	7.6e-145	82.80	PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Cucumis ...	[more]
gi\|595836842\|ref\|XP_007207339.1\|	1.1e-103	62.34	hypothetical protein PRUPE_ppa008870mg [Prunus persica]	[more]
gi\|1009113846\|ref\|XP_015873366.1\|	2.3e-101	61.13	PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Ziziphus...	[more]
gi\|296083970\|emb\|CBI24358.3\|	9.7e-100	60.38	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0030915	Smc5-Smc6 complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

Vocabulary: **INTERPRO**
Term	Definition
IPR014857	Znf_RING-like
IPR013083	Znf_RING/FYVE/PHD
IPR011513	Nse1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0030915	Smc5-Smc6 complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g05440	Cp4.1LG05g05440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05440.1	Cp4.1LG05g05440.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05440.1:five_prime_utr:001	Cp4.1LG05g05440.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05440.1:cds:001	Cp4.1LG05g05440.1:cds:001	CDS
Cp4.1LG05g05440.1:cds:002	Cp4.1LG05g05440.1:cds:002	CDS
Cp4.1LG05g05440.1:cds:003	Cp4.1LG05g05440.1:cds:003	CDS
Cp4.1LG05g05440.1:cds:004	Cp4.1LG05g05440.1:cds:004	CDS
Cp4.1LG05g05440.1:cds:005	Cp4.1LG05g05440.1:cds:005	CDS
Cp4.1LG05g05440.1:cds:006	Cp4.1LG05g05440.1:cds:006	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g05440.1:three_prime_utr:001	Cp4.1LG05g05440.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG05g05440.1:three_prime_utr:002	Cp4.1LG05g05440.1:three_prime_utr:002	three_prime_UTR
Cp4.1LG05g05440.1:three_prime_utr:003	Cp4.1LG05g05440.1:three_prime_utr:003	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011513	Non-structural maintenance of chromosomes element 1	PFAM	PF07574	SMC_Nse1	coord: 8..185 score: 3.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 193..251 score: 1.
IPR014857	Zinc finger, RING-like	PFAM	PF08746	zf-RING-like	coord: 197..240 score: 2.
None	No IPR available	PANTHER	PTHR20973	NON-SMC ELEMENT 1-RELATED	coord: 1..307 score: 6.5