Cp4.1LG04g12690.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g12690.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 10563806 .. 10564510 (+)
Sequence length619
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGAAATGATGCATGTTGAGAGTGGCGGCGGGAATGTGAAGAAGAGAATGATGAAGAGGAGGAGGAAGAAGAAAAACATTCACAAAGTGATCGATTATCTGTTATCTGATTGCTACTTATTTGCTCCTCTAATTTCTCCTTCACCCTTCAATTCTTATCGCGCACCCAGAAAAGGTTCATCCTTCATCTCAGATATCGAATTTAGGGAACGCCCAAAAGATCACCGGAGTTTTCTCAAGAAGATGGTGGATTATTTGAAATCCGATTGCTACATGTATGCTTCTCTCGTTGCACCACAATCCTTCAAAGGTACTTAAACTCCTCCTTTATACACAACGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGACGAGTGCACTACAAATACAGGGCGTGCTGGGTATGTAAAAAGGGTAGTAACTACGGAAGTGTCGGCGAGAAGATTAATTCTCAGAGGGGACGAAGTTATGAGTGAATCCGCTGCGAACATGACTAAAGAGAGGAGAATTTGCAGCACTGATTTAATGGAAGCGGAGGTTGTTATGGATCAACCAAATGCGACAAGAAAGGAGCCACCTTTCTCACTCCACATGCCTGCCACTCGATGCTCTGTTCGCAATCAAAACACGCCTCGGCCTATTCGTATGGCTTCATAATGGACCCTCTCCCCTGTATTTGATAATATGTTTCATT

mRNA sequence

ATGGCGAAGGAAATGATGCATGTTGAGAGTGGCGGCGGGAATGTGAAGAAGAGAATGATGAAGAGGAGGAGGAAGAAGAAAAACATTCACAAAGTGATCGATTATCTGTTATCTGATTGCTACTTATTTGCTCCTCTAATTTCTCCTTCACCCTTCAATTCTTATCGCGCACCCAGAAAAGGTTCATCCTTCATCTCAGATATCGAATTTAGGGAACGCCCAAAAGATCACCGGAGTTTTCTCAAGAAGATGGTGGATTATTTGAAATCCGATTGCTACATGTATGCTTCTCTCGTTGCACCACAATCCTTCAAAGGGCGTGCTGGGTATGTAAAAAGGGTAGTAACTACGGAAGTGTCGGCGAGAAGATTAATTCTCAGAGGGGACGAAGTTATGAGTGAATCCGCTGCGAACATGACTAAAGAGAGGAGAATTTGCAGCACTGATTTAATGGAAGCGGAGGTTGTTATGGATCAACCAAATGCGACAAGAAAGGAGCCACCTTTCTCACTCCACATGCCTGCCACTCGATGCTCTGTTCGCAATCAAAACACGCCTCGGCCTATTCGTATGGCTTCATAATGGACCCTCTCCCCTGTATTTGATAATATGTTTCATT

Coding sequence (CDS)

ATGGCGAAGGAAATGATGCATGTTGAGAGTGGCGGCGGGAATGTGAAGAAGAGAATGATGAAGAGGAGGAGGAAGAAGAAAAACATTCACAAAGTGATCGATTATCTGTTATCTGATTGCTACTTATTTGCTCCTCTAATTTCTCCTTCACCCTTCAATTCTTATCGCGCACCCAGAAAAGGTTCATCCTTCATCTCAGATATCGAATTTAGGGAACGCCCAAAAGATCACCGGAGTTTTCTCAAGAAGATGGTGGATTATTTGAAATCCGATTGCTACATGTATGCTTCTCTCGTTGCACCACAATCCTTCAAAGGGCGTGCTGGGTATGTAAAAAGGGTAGTAACTACGGAAGTGTCGGCGAGAAGATTAATTCTCAGAGGGGACGAAGTTATGAGTGAATCCGCTGCGAACATGACTAAAGAGAGGAGAATTTGCAGCACTGATTTAATGGAAGCGGAGGTTGTTATGGATCAACCAAATGCGACAAGAAAGGAGCCACCTTTCTCACTCCACATGCCTGCCACTCGATGCTCTGTTCGCAATCAAAACACGCCTCGGCCTATTCGTATGGCTTCATAA

Protein sequence

MAKEMMHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVVTTEVSARRLILRGDEVMSESAANMTKERRICSTDLMEAEVVMDQPNATRKEPPFSLHMPATRCSVRNQNTPRPIRMAS
Homology
[Close]
BLAST of Cp4.1LG04g12690.1 vs. TrEMBL
Match: A0A0A0LTL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-22
Identity = 70/118 (59.32%), Postives = 81/118 (68.64%), Query Frame = 1 

Query: 1   MAKEMMHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPL-ISPSPF-NSYRAP 60
           MAK+M+HV  G G  KKR +KR  KKK IHKVIDYLLSDCYLFAPL ISPSP  NS+  P
Sbjct: 1   MAKKMVHVSGGIG--KKRRIKRS-KKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTP 60

Query: 61  RKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVVT 117
            +G      IE R R KD R+ +KK  DYL+SDCYMYASLV P+S + R  Y  +  T
Sbjct: 61  TRG------IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGT 109

[Close]
BLAST of Cp4.1LG04g12690.1 vs. TrEMBL
Match: A0A067KUZ1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04116 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-12
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = 1 

Query: 16  KKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPR-KGSSFISDIEFRERP 75
           K++   ++ KKK + KV+DYL SD Y+FAPLISP P  ++ A R   SS  +++E     
Sbjct: 11  KRKRSVKKNKKKVLKKVVDYLKSDSYMFAPLISP-PLTNFLASRIVPSSSTTEVETTGNK 70

Query: 76  KDH-RSFLKKMVDYLKSDCYMYASLVAPQ---SFKGRAGYVKRVVTTEVSARRLILRGDE 135
           K   +SF++K+ +YLKSD ++Y+ L  P+   S K   GYV+R VT E+S R+LI   D+
Sbjct: 71  KQRKKSFIQKVGEYLKSDTHLYSHLCVPRHPTSPKDFNGYVRR-VTMEISTRKLIRENDQ 130

Query: 136 VMSESAANMT 141
              E A+N+T
Sbjct: 131 STIE-ASNIT 137

[Close]
BLAST of Cp4.1LG04g12690.1 vs. TrEMBL
Match: F6HYP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-10
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 8   VESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISD 67
           V SG G   KR MK+  KKK + KV+DYL SD Y+FAPLI   P NS  AP  G      
Sbjct: 5   VASGSGVQNKRPMKKNNKKKWLQKVLDYLKSDSYMFAPLIF-HPTNSAAAP--GVEMTKP 64

Query: 68  IEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQ 103
           I+     +D+R+ L+K+ +YLKSD YMYA L+  Q
Sbjct: 65  IK-----EDNRTLLEKVEEYLKSDNYMYAPLIITQ 91

[Close]
BLAST of Cp4.1LG04g12690.1 vs. TrEMBL
Match: M5XIK5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1 

Query: 15  VKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSPFNSYRAPRKGSSFISDIEFRERP 74
           V+K+   +R KKK + KVID+L+S+ Y+FAPLIS  P + + +P K  + I+ +E R+  
Sbjct: 5   VQKKRPIKRNKKKLLKKVIDFLISNSYMFAPLISHPP-HGFSSPMKTRASITGVEGRKPI 64

Query: 75  K-DHRSFLKKMVDYLKSDCYMYASLVA 101
           K +++  LKK+ DYLKSD YMYA L+A
Sbjct: 65  KGNNKRLLKKVGDYLKSDSYMYAPLLA 90

[Close]
BLAST of Cp4.1LG04g12690.1 vs. TrEMBL
Match: W9RKH4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023018 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 51/124 (41.13%), Postives = 67/124 (54.03%), Query Frame = 1 

Query: 13  GNVKKRMMKRRRKKKN--IHKVIDYLLSDCYLFAPLISP-SPFNSYRAPRKGSSFISDIE 72
           G  KKR+  +R KKK   + KV+DYL  DC LFAPL S  S F S++           IE
Sbjct: 11  GVQKKRLKNKRNKKKYNLLDKVLDYLKFDCCLFAPLTSSNSDFRSHK-----------IE 70

Query: 73  FRERPKDH-RSFLKKMVDYLKSDCYMYASLVAPQS-----FKGRAGYVKRVVTTEVSARR 128
            +E  K++ +  +KK+ +YL SD YMYA LV P        KG   Y K  VT EV+ R 
Sbjct: 71  MKENAKENKKKLVKKVGEYLISDSYMYAPLVVPPKPLWVPTKGPQRYTKH-VTVEVARRS 122

[Close]
BLAST of Cp4.1LG04g12690.1 vs. TAIR10
Match: AT5G57790.1 (AT5G57790.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-08
Identity = 35/118 (29.66%), Postives = 59/118 (50.00%), Query Frame = 1 

Query: 17  KRMMKRRRKKKNIHKVIDYLLSDCYLFAPLISPSP-----FNSYRAPRKGSSFISDIEFR 76
           ++ +KR++ ++ +  ++ YL SD YLFAPL S  P      ++        S + DI   
Sbjct: 12  RKKLKRKKCRRLVRSIVTYLKSDTYLFAPLFSNFPPLTTEIDTPPPSNSKPSTVDDISME 71

Query: 77  -------ERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVVTTEVSAR 123
                  E+    R   +K+ +YLKSDCYMY+ +++     G +   K  +T EVS +
Sbjct: 72  GFESLGIEKLIKKRRMSEKVKEYLKSDCYMYSPMISSPPKLGSSVKGKMQITMEVSTK 129

[Close]
BLAST of Cp4.1LG04g12690.1 vs. NCBI nr
Match: gi|659086186|ref|XP_008443802.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 72/124 (58.06%), Postives = 85/124 (68.55%), Query Frame = 1 

Query: 1   MAKEMMHVESGGGN-VKKRMMKRRRKKKNIHKVIDYLLSDCYLFAP-LISPSPF-NSYRA 60
           MAK+M+HV  GGG  + K+ + +R KKK IHKVIDYLLSDCYLFAP LISPSP  NS+  
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PRKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFK-------GRAGY 115
           P +G      IE R R KD+RS +KK  DYLKSDCYMYASLV P+S +       GR  Y
Sbjct: 61  PTRG------IEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLREKGETGRVEY 118

[Close]
BLAST of Cp4.1LG04g12690.1 vs. NCBI nr
Match: gi|659086188|ref|XP_008443803.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 72/124 (58.06%), Postives = 85/124 (68.55%), Query Frame = 1 

Query: 1   MAKEMMHVESGGGN-VKKRMMKRRRKKKNIHKVIDYLLSDCYLFAP-LISPSPF-NSYRA 60
           MAK+M+HV  GGG  + K+ + +R KKK IHKVIDYLLSDCYLFAP LISPSP  NS+  
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PRKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFK-------GRAGY 115
           P +G      IE R R KD+RS +KK  DYLKSDCYMYASLV P+S +       GR  Y
Sbjct: 61  PTRG------IEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKSPRLREKGETGRVEY 118

[Close]
BLAST of Cp4.1LG04g12690.1 vs. NCBI nr
Match: gi|659086190|ref|XP_008443804.1| (PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = 1 

Query: 1   MAKEMMHVESGGGN-VKKRMMKRRRKKKNIHKVIDYLLSDCYLFAP-LISPSPF-NSYRA 60
           MAK+M+HV  GGG  + K+ + +R KKK IHKVIDYLLSDCYLFAP LISPSP  NS+  
Sbjct: 1   MAKKMVHVGGGGGGGIGKKRLIKRSKKKYIHKVIDYLLSDCYLFAPLLISPSPINNSHVT 60

Query: 61  PRKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQS 104
           P +G      IE R R KD+RS +KK  DYLKSDCYMYASLV P+S
Sbjct: 61  PTRG------IEIRGRTKDNRSLVKKFQDYLKSDCYMYASLVTPKS 100

[Close]
BLAST of Cp4.1LG04g12690.1 vs. NCBI nr
Match: gi|700210179|gb|KGN65275.1| (hypothetical protein Csa_1G294060 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 8.5e-22
Identity = 70/118 (59.32%), Postives = 81/118 (68.64%), Query Frame = 1 

Query: 1   MAKEMMHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAPL-ISPSPF-NSYRAP 60
           MAK+M+HV  G G  KKR +KR  KKK IHKVIDYLLSDCYLFAPL ISPSP  NS+  P
Sbjct: 1   MAKKMVHVSGGIG--KKRRIKRS-KKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTP 60

Query: 61  RKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQSFKGRAGYVKRVVT 117
            +G      IE R R KD R+ +KK  DYL+SDCYMYASLV P+S + R  Y  +  T
Sbjct: 61  TRG------IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKSPRLRGIYTSKFGT 109

[Close]
BLAST of Cp4.1LG04g12690.1 vs. NCBI nr
Match: gi|778660341|ref|XP_011656059.1| (PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 1   MAKEMMHVESGGGNVKKRMMKRRRKKKNIHKVIDYLLSDCYLFAP-LISPSPF-NSYRAP 60
           MAK+M+HV  G G  KKR +KR  KKK IHKVIDYLLSDCYLFAP LISPSP  NS+  P
Sbjct: 1   MAKKMVHVSGGIG--KKRRIKRS-KKKYIHKVIDYLLSDCYLFAPLLISPSPIDNSHVTP 60

Query: 61  RKGSSFISDIEFRERPKDHRSFLKKMVDYLKSDCYMYASLVAPQS 104
            +G      IE R R KD R+ +KK  DYL+SDCYMYASLV P+S
Sbjct: 61  TRG------IEIRGRTKDSRTLVKKFQDYLQSDCYMYASLVTPKS 96

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g12690.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g12690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTL8_CUCSA5.9e-2259.32Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294060 PE=4 SV=1[more]
A0A067KUZ1_JATCU3.3e-1242.31Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04116 PE=4 SV=1[more]
F6HYP2_VITVI5.2e-1048.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01220 PE=4 SV=... [more]
M5XIK5_PRUPE1.5e-0947.13Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016338mg PE=4 SV=1[more]
W9RKH4_9ROSA1.1e-0741.13Uncharacterized protein OS=Morus notabilis GN=L484_023018 PE=4 SV=1[more]
BLAST of Cp4.1LG04g12690.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57790.17.4e-0829.66 unknown protein[more]
BLAST of Cp4.1LG04g12690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086186|ref|XP_008443802.1|4.1e-2458.06PREDICTED: uncharacterized protein LOC103487306 isoform X1 [Cucumis melo][more]
gi|659086188|ref|XP_008443803.1|4.1e-2458.06PREDICTED: uncharacterized protein LOC103487306 isoform X2 [Cucumis melo][more]
gi|659086190|ref|XP_008443804.1|2.6e-2363.21PREDICTED: uncharacterized protein LOC103487306 isoform X3 [Cucumis melo][more]
gi|700210179|gb|KGN65275.1|8.5e-2259.32hypothetical protein Csa_1G294060 [Cucumis sativus][more]
gi|778660341|ref|XP_011656059.1|2.5e-2163.81PREDICTED: uncharacterized protein LOC105435617 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG04g12690Cp4.1LG04g12690gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g12690.1:cds:001Cp4.1LG04g12690.1:cds:001CDS
Cp4.1LG04g12690.1:cds:002Cp4.1LG04g12690.1:cds:002CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g12690.1:three_prime_utr:001Cp4.1LG04g12690.1:three_prime_utr:001three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG04g12690.1Cp4.1LG04g12690.1-proteinpolypeptide