Cp4.1LG04g08820.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g08820.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Endonuclease/exonuclease/phosphatase domain-containing protein
Location	Cp4.1LG04 : 10453069 .. 10455387 (+)
Sequence length	1413

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAGAAGAAAAAAGAAAGAAAATAGTCACCTTGGCCTTTCAAGATTAGTCACGTGATCCAGGCATCGAGTTGTGGGCACTCACGTGCGTCGTCAAACCCCAGTGCCCTGCCCTCCCTTCGGACATGACCAAATTAAATTAGGATTTCTTTCCCCCTCCCTCTCTAATCTCAGCTACTTTTGATTCTTTACCCGTACCGGAAGGATCGAATGTACCGATAGGTTCTAGCTACTGCTGATCCTTTTTGGTTCTTAAAATCAGTAATCAACAAAAAGTAGGGATTTTCGAATTCTGGAAGAGAAAAATGAGTGTTACTTTGACTGTAATGACATTCAATCTCCATGATGATCAACCACCAGAGAGCTCAAATTCTTGGGAGAAGAGGAGGGACTTGTGTATCAGTGTCATCACTAGCTACTCGCCCGCGATTCTCTGCACTCAGCAAGGTAGCTCCCTTTTCCTTTACTCCTCTGCTACTCTACTTTATCGGATTTCATATTTGATCCTGTGAATGCCTTGTGGATCTTGATCATTGGTGCGATTTTGTTGCAATAATTGATCTGGGTCTTGTTTGAATCGAGTTTTCTTGGTGGGTTTTTGGTGCTTTATGATTTCATTCGAGTTTTGGGTTGTTTTGTTAGGAAGCTTCAATGGAGTAGTGTGGCCATTTTGGTGGAACTTTTTTTTGTGGACGAACTTCAATGATTGAGTTCAATACACTTGATCTAGGAAGAAACTAATGAACTGCTACCATTTCCTTCTCTGATTCCTTCATTTCTCTATTGGGTTCAGGTGTGAAATCTCAGTTGGACTTTCTTCAGCAGGGCTTGCCTGGTATGTTAGCTTGTTATTGTTCAGTTCATATTGGGTTAGAAGTTCTTTTTGTACGTTCTCTACGAATGTGGAGCTGAAATTTTTAACATCTTTGAGGGGAAGATCATAAAGCAAGTTCTTATAACTTAGAAGTATTAATTCTCTTTCAGGCTATGGCCAATTCGGAGTTTCAAGAAAAGGATCCAGAGACACATCAGATGAACACTGCACAATCTTCTACGACAAGGAGAAGGTATTGAATTTTGGTTCAAGTCTGATAATCCAGTGTGGTTTTTTATGCTTCACTGTTTGTTTCTTCGATTAAAAAGGTTGAGCTGTTAGAAGGTGGCACATTTTGGTTATCAGAATCACCTTCTGTCCCGGGAAGCATGTCGTGGGGTTCGATCGTTCCGCATATTGCAACGTGGGCGATATCCTTGAGATTTCATTATATTTTAACCTATCCATTAGACTTTGTGTTATTTGTTAACTTGACAGACTGCCCACACATTCGAACTGAAAGGAATCGAGCCTCCTGGGTTCTCATTTCAGATAGTGAATACGAGCATGGATGAGCTCAACCCTCGTGCTCGTAGACGAAGCGCTTTACTTACATGGCAGCACATTGCATCCTTACCTCCTAGCTTGCCAGTTATATATTGTGGAGGTTTCAACACAGAAAAGGAATCAACTACTGGTCGTTTTCTTCTTGGGAGATCCAGGTAACTGAAACAACATTTTCTGTCTTAATCAGCCTTATTAGCTCGCATAGTTCATTTATCTTAACAGATCTTGTCGTCCATGGTGGCAGAGAAAAAGGTGCAGTTGGGGACATGAGAGATACATGGGCGATTGCTCGGGCAAGGAAGAATGTTTCTCTTATTCGAACGTATCATGGCTTCAAAGGTATGCAATTTAGCTAAGACAAACTTGCTTAGGAGCGCGTTCGACCTTTGCTCGACTCGTTGAGACTCTTTTTTCAGGTGACAAACAGGGAGCTTTTGAATTTTTCAAGTTGATTCTAAGAGCACTCTGCCTTTGCTGGGATCGCCAGACCCAAGATCTACATGTAGATTGGATTCTTTTCAGAGGTAGATCTTTGATCCCTGTCGTGTGCGAAGTGGTAAACGATAATATCGACGGATTTTACCCGTCGTCTCACTACCCTTTGTTTTCCGAATTCATGCTTCCTCGAACCGTCAGAATGCTCGAAACAACAACTACTACTCAAGAGTGACACTAAATCACCATTTGTTATAACTCAGAATTCTCCATTGTTCTCTGTTTAAGCTCCAAATGATGTGTTTGTTGATGTAGAAGTTCATGTTTATAGCAGCAAGTTTTCTCTACTGGTTTACACTGTATGATAACCTTCAAATGACCACTTGAATTACTTCCAAAATGGTCATTGGTATTATTTTGCTTCTGAGAGAGTTCAAAGTTGTATCAAGTTTTCTTCTATGACAAGAAGTTGTTTCAAGAATGTGATTCATTGTTGATTTTCG

mRNA sequence

AACAAGAAGAAAAAAGAAAGAAAATAGTCACCTTGGCCTTTCAAGATTAGTCACGTGATCCAGGCATCGAGTTGTGGGCACTCACGTGCGTCGTCAAACCCCAGTGCCCTGCCCTCCCTTCGGACATGACCAAATTAAATTAGGATTTCTTTCCCCCTCCCTCTCTAATCTCAGCTACTTTTGATTCTTTACCCGTACCGGAAGGATCGAATGTACCGATAGGTTCTAGCTACTGCTGATCCTTTTTGGTTCTTAAAATCAGTAATCAACAAAAAGTAGGGATTTTCGAATTCTGGAAGAGAAAAATGAGTGTTACTTTGACTGTAATGACATTCAATCTCCATGATGATCAACCACCAGAGAGCTCAAATTCTTGGGAGAAGAGGAGGGACTTGTGTATCAGTGTCATCACTAGCTACTCGCCCGCGATTCTCTGCACTCAGCAAGGTGTGAAATCTCAGTTGGACTTTCTTCAGCAGGGCTTGCCTGGCTATGGCCAATTCGGAGTTTCAAGAAAAGGATCCAGAGACACATCAGATGAACACTGCACAATCTTCTACGACAAGGAGAAGACTGCCCACACATTCGAACTGAAAGGAATCGAGCCTCCTGGGTTCTCATTTCAGATAGTGAATACGAGCATGGATGAGCTCAACCCTCGTGCTCGTAGACGAAGCGCTTTACTTACATGGCAGCACATTGCATCCTTACCTCCTAGCTTGCCAGTTATATATTGTGGAGGTTTCAACACAGAAAAGGAATCAACTACTGGTCGTTTTCTTCTTGGGAGATCCAGAGAAAAAGGTGCAGTTGGGGACATGAGAGATACATGGGCGATTGCTCGGGCAAGGAAGAATGTTTCTCTTATTCGAACGTATCATGGCTTCAAAGGTGACAAACAGGGAGCTTTTGAATTTTTCAAGTTGATTCTAAGAGCACTCTGCCTTTGCTGGGATCGCCAGACCCAAGATCTACATGTAGATTGGATTCTTTTCAGAGGTAGATCTTTGATCCCTGTCGTGTGCGAAGTGGTAAACGATAATATCGACGGATTTTACCCGTCGTCTCACTACCCTTTGTTTTCCGAATTCATGCTTCCTCGAACCGTCAGAATGCTCGAAACAACAACTACTACTCAAGAGTGACACTAAATCACCATTTGTTATAACTCAGAATTCTCCATTGTTCTCTGTTTAAGCTCCAAATGATGTGTTTGTTGATGTAGAAGTTCATGTTTATAGCAGCAAGTTTTCTCTACTGGTTTACACTGTATGATAACCTTCAAATGACCACTTGAATTACTTCCAAAATGGTCATTGGTATTATTTTGCTTCTGAGAGAGTTCAAAGTTGTATCAAGTTTTCTTCTATGACAAGAAGTTGTTTCAAGAATGTGATTCATTGTTGATTTTCG

Coding sequence (CDS)

ATGAGTGTTACTTTGACTGTAATGACATTCAATCTCCATGATGATCAACCACCAGAGAGCTCAAATTCTTGGGAGAAGAGGAGGGACTTGTGTATCAGTGTCATCACTAGCTACTCGCCCGCGATTCTCTGCACTCAGCAAGGTGTGAAATCTCAGTTGGACTTTCTTCAGCAGGGCTTGCCTGGCTATGGCCAATTCGGAGTTTCAAGAAAAGGATCCAGAGACACATCAGATGAACACTGCACAATCTTCTACGACAAGGAGAAGACTGCCCACACATTCGAACTGAAAGGAATCGAGCCTCCTGGGTTCTCATTTCAGATAGTGAATACGAGCATGGATGAGCTCAACCCTCGTGCTCGTAGACGAAGCGCTTTACTTACATGGCAGCACATTGCATCCTTACCTCCTAGCTTGCCAGTTATATATTGTGGAGGTTTCAACACAGAAAAGGAATCAACTACTGGTCGTTTTCTTCTTGGGAGATCCAGAGAAAAAGGTGCAGTTGGGGACATGAGAGATACATGGGCGATTGCTCGGGCAAGGAAGAATGTTTCTCTTATTCGAACGTATCATGGCTTCAAAGGTGACAAACAGGGAGCTTTTGAATTTTTCAAGTTGATTCTAAGAGCACTCTGCCTTTGCTGGGATCGCCAGACCCAAGATCTACATGTAGATTGGATTCTTTTCAGAGGTAGATCTTTGATCCCTGTCGTGTGCGAAGTGGTAAACGATAATATCGACGGATTTTACCCGTCGTCTCACTACCCTTTGTTTTCCGAATTCATGCTTCCTCGAACCGTCAGAATGCTCGAAACAACAACTACTACTCAAGAGTGA

Protein sequence

MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGLPGYGQFGVSRKGSRDTSDEHCTIFYDKEKTAHTFELKGIEPPGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNTEKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLILRALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVRMLETTTTTQE

Homology

[Close]

BLAST of Cp4.1LG04g08820.1 vs. TrEMBL
Match: A0A0B0P3J4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02575 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 4.4e-135
Identity = 230/297 (77.44%), Postives = 255/297 (85.86%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLH+D+  +S NSWEKRRDLCISVITSYSP ILCTQQGVKSQLD+LQQGL
Sbjct: 1   MSVSLTVMTFNLHEDESEDSPNSWEKRRDLCISVITSYSPIILCTQQGVKSQLDYLQQGL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEKT----AHTFELK--------------GIEPP 120
           PGY QFG+SRKG +DTSDE CTIFYDKEK       TF L               G+EPP
Sbjct: 61  PGYDQFGISRKGPQDTSDECCTIFYDKEKVELIEGGTFWLSESPSVPGSTSWGSVGVEPP 120

Query: 121 GFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNTEKESTTGRFLLGR 180
           GFSFQ+VNTSMDE +PRARRRSALLTWQHIASLPPSLPV+YCGGFNT+KESTTGRFLLGR
Sbjct: 121 GFSFQVVNTSMDEFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNTQKESTTGRFLLGR 180

Query: 181 SREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLILRALCLCWDRQTQD 240
           SRE G VGDMRD W  AR RKNVSLIRTYHGFKGDKQGA EF KL+ RALCLCWDRQTQD
Sbjct: 181 SREHGVVGDMRDVWPNARVRKNVSLIRTYHGFKGDKQGALEFLKLVFRALCLCWDRQTQD 240

Query: 241 LHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVRMLETTTTTQE 280
           LH+DWILFRGRSLIPV+C+VVNDN+DG+YPSSHYP+F+EF+LPRTVR++E  T+TQ+
Sbjct: 241 LHIDWILFRGRSLIPVLCQVVNDNMDGYYPSSHYPIFAEFLLPRTVRLMEPPTSTQD 297

[Close]

BLAST of Cp4.1LG04g08820.1 vs. TrEMBL
Match: I1JGP9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G204100 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 8.6e-131
Identity = 229/304 (75.33%), Postives = 248/304 (81.58%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLHDD+P +S NSWEKRRD+CISVITSYSP ILCTQQGVK+QLDFLQQGL
Sbjct: 1   MSVSLTVMTFNLHDDEPQDSPNSWEKRRDMCISVITSYSPIILCTQQGVKAQLDFLQQGL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEKT----AHTFELK-----------GIEP---- 120
           PGY QFG+SRKG +DT+D+HCTIFYDKEK       TF L            G E     
Sbjct: 61  PGYDQFGISRKGPQDTTDQHCTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGSEVPCIA 120

Query: 121 ------------PGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
                       PGFSFQIVNT+MDE +PRARRRSALLTWQHIASLPPSLPV+YCGGFNT
Sbjct: 121 TWATFQLKGVEPPGFSFQIVNTNMDEFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE G VGDMRD W  AR RKNVSLI TYHGFKGDKQG  EF KLI 
Sbjct: 181 QKESTTGRFLLGRSREHGVVGDMRDAWPSARVRKNVSLIHTYHGFKGDKQGTLEFLKLIF 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 274
           RALCLCWDRQTQDLH+DWILFRGRSLIPV CEVVNDNIDG+YPSSH+P+F+EFMLPRTVR
Sbjct: 241 RALCLCWDRQTQDLHIDWILFRGRSLIPVSCEVVNDNIDGYYPSSHFPIFAEFMLPRTVR 300

[Close]

BLAST of Cp4.1LG04g08820.1 vs. TrEMBL
Match: B9IMD6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11590g PE=4 SV=2)

HSP 1 Score: 473.4 bits (1217), Expect = 1.9e-130
Identity = 228/299 (76.25%), Postives = 249/299 (83.28%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLHDDQ  +S NSWEKR+DLCISV+TSYSP ILCTQQGVK+QLD+LQQ L
Sbjct: 1   MSVSLTVMTFNLHDDQAEDSPNSWEKRKDLCISVVTSYSPMILCTQQGVKTQLDYLQQCL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEKTA----HTFELK----------------GIE 120
           PGYGQFG+SRKGS+D+ DEHCTIFYDKEK       TF L                  IE
Sbjct: 61  PGYGQFGISRKGSQDSLDEHCTIFYDKEKVELLEDGTFWLSESPSVPGSMSWGAAVPWIE 120

Query: 121 PPGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNTEKESTTGRFLL 180
           PPGFS QIVNT+MDE +PRARRRSALLTWQHIASLPPSLPV+YCGGFNT KESTTGRFLL
Sbjct: 121 PPGFSLQIVNTNMDEFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNTHKESTTGRFLL 180

Query: 181 GRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLILRALCLCWDRQT 240
           GRS E G VGDMRDTW  A+ RKNVSL+ T+H FKGDKQGA EFFKLILRALCLCWDRQT
Sbjct: 181 GRSSEHGVVGDMRDTWPNAQVRKNVSLVHTFHDFKGDKQGALEFFKLILRALCLCWDRQT 240

Query: 241 QDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVRMLETTTTTQE 280
           QDLHVDWILFRGRSLIPV CEVVNDNI+G YPSSHYP+F+EFMLPR+VR+LE   T +E
Sbjct: 241 QDLHVDWILFRGRSLIPVQCEVVNDNINGRYPSSHYPIFAEFMLPRSVRLLEPPLTAEE 299

[Close]

BLAST of Cp4.1LG04g08820.1 vs. TrEMBL
Match: A0A164ZN17_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019393 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 3.3e-130
Identity = 222/303 (73.27%), Postives = 250/303 (82.51%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           M+++LTVMTFNL +DQP +S NSW KRRDLCISVITSYSP I+CTQQGVKSQLD+LQQ L
Sbjct: 1   MNLSLTVMTFNLLEDQPEDSQNSWMKRRDLCISVITSYSPMIICTQQGVKSQLDYLQQCL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEK------------------------------- 120
           PGY QFG+SRKG+ DTSDEHCTIFYDKEK                               
Sbjct: 61  PGYDQFGISRKGTEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGCEVPCIA 120

Query: 121 TAHTFELKGIEPPGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
           T  TF+LKG+EPPGFSFQ+VNT+MDEL+PRARRRSALLTWQHIASLPPSLPV+YCGGFNT
Sbjct: 121 TWTTFQLKGVEPPGFSFQVVNTNMDELSPRARRRSALLTWQHIASLPPSLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE G VGDM+D W+ AR RKNVSLIRTYHGFKGDKQGA EF KL+ 
Sbjct: 181 QKESTTGRFLLGRSREHGVVGDMKDAWSNARVRKNVSLIRTYHGFKGDKQGALEFLKLVF 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 273
           RA CLCWDRQTQDLHVDWIL+RGR+L+PV  EVV+DNIDGFYPSSHYP+++EFMLPR+VR
Sbjct: 241 RAFCLCWDRQTQDLHVDWILYRGRALVPVSSEVVSDNIDGFYPSSHYPVYAEFMLPRSVR 300

[Close]

BLAST of Cp4.1LG04g08820.1 vs. TrEMBL
Match: A0A0R0F973_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G073700 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 3.3e-130
Identity = 230/304 (75.66%), Postives = 247/304 (81.25%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNL+DD+P +S NSWEKRRDLCISVITSYSP ILCTQQGVK+QLDFLQQGL
Sbjct: 1   MSVSLTVMTFNLYDDEPQDSPNSWEKRRDLCISVITSYSPIILCTQQGVKAQLDFLQQGL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEKT----AHTFELK-----------GIEP---- 120
           PGY QFG+SRKG +DT+ EHCTIFYDKEK       TF L            G E     
Sbjct: 61  PGYDQFGISRKGPQDTTSEHCTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGSEVPCIA 120

Query: 121 ------------PGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
                       PGFSFQIVNT MDE +PRARRRSALLTWQHIASLPPSLPV+YCGGFNT
Sbjct: 121 TWATFQLKGVEPPGFSFQIVNTIMDEFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE G VGDMRD W  AR RKNVSLIRTYHGFKGDKQG  EF KLI 
Sbjct: 181 QKESTTGRFLLGRSREHGVVGDMRDAWPSARVRKNVSLIRTYHGFKGDKQGTLEFLKLIF 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 274
           RALCLCWDRQTQDLH+DWILFRGRSLIPV CEVVNDNIDG+YPSSH+P+F+EFMLPRTVR
Sbjct: 241 RALCLCWDRQTQDLHIDWILFRGRSLIPVSCEVVNDNIDGYYPSSHFPIFAEFMLPRTVR 300

[Close]

BLAST of Cp4.1LG04g08820.1 vs. TAIR10
Match: AT4G30900.1 (AT4G30900.1 DNAse I-like superfamily protein)

HSP 1 Score: 411.8 bits (1057), Expect = 3.4e-115
Identity = 201/305 (65.90%), Postives = 233/305 (76.39%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+L+VM+FNLHDD P ES NSW KR+DLC++VITSYSP +LCTQQGVKSQLD+LQQGL
Sbjct: 1   MSVSLSVMSFNLHDDLPEESPNSWLKRKDLCLTVITSYSPIVLCTQQGVKSQLDYLQQGL 60

Query: 61  P-----GYGQFGVSRKG--------SRDTSD--EHCTIFYDKEK---------------- 120
           P     G  + G             +++  +  E  T +  +                  
Sbjct: 61  PAYDQFGISRTGPGDANDEHCTIFFNKEKVELLEGGTFWLSESPSVPGSTAWGSAVPCIA 120

Query: 121 TAHTFELKGIEPPGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
           T  TF+LKG EPPGFSFQIVNT++DE++PRARRRSALLTWQHIASLPP+LPV+YCGGFNT
Sbjct: 121 TWATFQLKGAEPPGFSFQIVNTNLDEISPRARRRSALLTWQHIASLPPTLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE G VGDMRD W  AR RKNV+LIRTYH FKGDKQG  EF KLI 
Sbjct: 181 QKESTTGRFLLGRSREHGVVGDMRDAWPSARVRKNVALIRTYHDFKGDKQGTVEFLKLIF 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 275
           RALCLCWDRQTQDLH DWIL+RGRS++PV+CE+VND ID  YPSSHYP+F+EFMLPR+VR
Sbjct: 241 RALCLCWDRQTQDLHTDWILYRGRSIVPVMCEIVNDKIDDLYPSSHYPVFAEFMLPRSVR 300

[Close]

BLAST of Cp4.1LG04g08820.1 vs. NCBI nr
Match: gi|728841835|gb|KHG21278.1| (Uncharacterized protein F383_02575 [Gossypium arboreum])

HSP 1 Score: 488.8 bits (1257), Expect = 6.3e-135
Identity = 230/297 (77.44%), Postives = 255/297 (85.86%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLH+D+  +S NSWEKRRDLCISVITSYSP ILCTQQGVKSQLD+LQQGL
Sbjct: 1   MSVSLTVMTFNLHEDESEDSPNSWEKRRDLCISVITSYSPIILCTQQGVKSQLDYLQQGL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEKT----AHTFELK--------------GIEPP 120
           PGY QFG+SRKG +DTSDE CTIFYDKEK       TF L               G+EPP
Sbjct: 61  PGYDQFGISRKGPQDTSDECCTIFYDKEKVELIEGGTFWLSESPSVPGSTSWGSVGVEPP 120

Query: 121 GFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNTEKESTTGRFLLGR 180
           GFSFQ+VNTSMDE +PRARRRSALLTWQHIASLPPSLPV+YCGGFNT+KESTTGRFLLGR
Sbjct: 121 GFSFQVVNTSMDEFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNTQKESTTGRFLLGR 180

Query: 181 SREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLILRALCLCWDRQTQD 240
           SRE G VGDMRD W  AR RKNVSLIRTYHGFKGDKQGA EF KL+ RALCLCWDRQTQD
Sbjct: 181 SREHGVVGDMRDVWPNARVRKNVSLIRTYHGFKGDKQGALEFLKLVFRALCLCWDRQTQD 240

Query: 241 LHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVRMLETTTTTQE 280
           LH+DWILFRGRSLIPV+C+VVNDN+DG+YPSSHYP+F+EF+LPRTVR++E  T+TQ+
Sbjct: 241 LHIDWILFRGRSLIPVLCQVVNDNMDGYYPSSHYPIFAEFLLPRTVRLMEPPTSTQD 297

[Close]

BLAST of Cp4.1LG04g08820.1 vs. NCBI nr
Match: gi|694354423|ref|XP_009358437.1| (PREDICTED: uncharacterized protein LOC103949067 [Pyrus x bretschneideri])

HSP 1 Score: 483.0 bits (1242), Expect = 3.5e-133
Identity = 230/303 (75.91%), Postives = 250/303 (82.51%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLH+DQ  +S  SW+KRRDLCISVITSYSP ILCTQQGVKSQLD+LQQ L
Sbjct: 1   MSVSLTVMTFNLHEDQTEDSPYSWDKRRDLCISVITSYSPIILCTQQGVKSQLDYLQQCL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEK------------------------------- 120
           PGY QFG+SRKG  DTSDEHCTIFYDKEK                               
Sbjct: 61  PGYDQFGISRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGSEVPCIA 120

Query: 121 TAHTFELKGIEPPGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
           T  TF+LKG EPPGFSFQIVNT+MDE +PRARRRSALLTWQHIASLPP LPV+YCGGFNT
Sbjct: 121 TWVTFQLKGAEPPGFSFQIVNTNMDEFSPRARRRSALLTWQHIASLPPGLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE GAVGDMRD W  AR RKNVSLIRT+HGFKGDKQGA EF KL+ 
Sbjct: 181 QKESTTGRFLLGRSREHGAVGDMRDAWPNARVRKNVSLIRTFHGFKGDKQGALEFLKLVF 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 273
           RALCLCWDRQTQDLHVDWILFRGRSLIPV+CEVV+DNIDG+YPSSHYP+F+EFMLPRTVR
Sbjct: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVLCEVVSDNIDGYYPSSHYPIFAEFMLPRTVR 300

[Close]

BLAST of Cp4.1LG04g08820.1 vs. NCBI nr
Match: gi|658063656|ref|XP_008367748.1| (PREDICTED: uncharacterized protein LOC103431379 [Malus domestica])

HSP 1 Score: 480.7 bits (1236), Expect = 1.7e-132
Identity = 229/303 (75.58%), Postives = 249/303 (82.18%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLH+DQ  +S  SW+KRRDLCISVITSYSP ILCTQQGVKSQLD+LQQ L
Sbjct: 1   MSVSLTVMTFNLHEDQTEDSPYSWDKRRDLCISVITSYSPIILCTQQGVKSQLDYLQQCL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEK------------------------------- 120
           PGY QFG+SRKG  DTSDEHCTIFYDKEK                               
Sbjct: 61  PGYDQFGISRKGPEDTSDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGSEVPCIA 120

Query: 121 TAHTFELKGIEPPGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
           T  TF+LKG EPPGFSFQIVNT+MDE +PRARRRSALLTWQHIASLPP LPV+YCGGFNT
Sbjct: 121 TWVTFQLKGAEPPGFSFQIVNTNMDEFSPRARRRSALLTWQHIASLPPGLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE GAVGDMRD W  AR RKNVSLIRT+HGFKGDKQGA EF KL+ 
Sbjct: 181 QKESTTGRFLLGRSREHGAVGDMRDAWPNARVRKNVSLIRTFHGFKGDKQGALEFLKLVF 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 273
           RALCLCWDRQTQDLHVDWILFRGRSL PV+CEVV+DNIDG+YPSSHYP+F+EFMLPRTVR
Sbjct: 241 RALCLCWDRQTQDLHVDWILFRGRSLSPVLCEVVSDNIDGYYPSSHYPIFAEFMLPRTVR 300

[Close]

BLAST of Cp4.1LG04g08820.1 vs. NCBI nr
Match: gi|1021473638|ref|XP_016200253.1| (PREDICTED: uncharacterized protein LOC107641270 [Arachis ipaensis])

HSP 1 Score: 478.4 bits (1230), Expect = 8.5e-132
Identity = 233/304 (76.64%), Postives = 250/304 (82.24%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLHDDQ  +S NSWEKRRDLCISVITSYSP ILCTQQGVK+QLDFLQQGL
Sbjct: 1   MSVSLTVMTFNLHDDQAEDSPNSWEKRRDLCISVITSYSPIILCTQQGVKTQLDFLQQGL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEKT----AHTFELK-----------GIEP---- 120
           PGY QFG+SRKG +DT+DEHCTIFYDKEK       TF L            G E     
Sbjct: 61  PGYDQFGISRKGPQDTTDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGSEVPCIA 120

Query: 121 ------------PGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
                       PGFSFQIVNT+MD+ +PRARRRSALLTWQHIASLPPSLPV+YCGGFNT
Sbjct: 121 TWATFQLKGVEPPGFSFQIVNTNMDQFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE G VGDMRD W  AR RKNVSLIRTYHGFKGDKQGA EF KLIL
Sbjct: 181 QKESTTGRFLLGRSREHGVVGDMRDAWPSARVRKNVSLIRTYHGFKGDKQGALEFLKLIL 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 274
           RALCLCWDRQTQDLH+DWILFRGRSLIPV CEVVNDNIDG+YPSSH+P+F+EFMLPRTVR
Sbjct: 241 RALCLCWDRQTQDLHIDWILFRGRSLIPVSCEVVNDNIDGYYPSSHFPIFAEFMLPRTVR 300

[Close]

BLAST of Cp4.1LG04g08820.1 vs. NCBI nr
Match: gi|1012001775|ref|XP_015932931.1| (PREDICTED: uncharacterized protein LOC107459225 [Arachis duranensis])

HSP 1 Score: 475.3 bits (1222), Expect = 7.2e-131
Identity = 232/304 (76.32%), Postives = 249/304 (81.91%), Query Frame = 1


Query: 1   MSVTLTVMTFNLHDDQPPESSNSWEKRRDLCISVITSYSPAILCTQQGVKSQLDFLQQGL 60
           MSV+LTVMTFNLHDDQ  +S NSWEKRRDLCISVITSYSP ILCTQQGVK+QLDFLQQGL
Sbjct: 1   MSVSLTVMTFNLHDDQAEDSPNSWEKRRDLCISVITSYSPIILCTQQGVKTQLDFLQQGL 60

Query: 61  PGYGQFGVSRKGSRDTSDEHCTIFYDKEKT----AHTFELK-----------GIEP---- 120
           PGY QFG+SRKG +DT+DEHCTIFYDKEK       TF L            G E     
Sbjct: 61  PGYDQFGISRKGPQDTTDEHCTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGSEVPCIA 120

Query: 121 ------------PGFSFQIVNTSMDELNPRARRRSALLTWQHIASLPPSLPVIYCGGFNT 180
                       PGFSFQIVNT+MD+ +PRARRRSALLTWQHIASLPPSLPV+YCGGFNT
Sbjct: 121 TWATFQLKGVEPPGFSFQIVNTNMDQFSPRARRRSALLTWQHIASLPPSLPVVYCGGFNT 180

Query: 181 EKESTTGRFLLGRSREKGAVGDMRDTWAIARARKNVSLIRTYHGFKGDKQGAFEFFKLIL 240
           +KESTTGRFLLGRSRE G VGDMRD W  A  RKNVSLIRTYHGFKGDKQGA EF KLIL
Sbjct: 181 QKESTTGRFLLGRSREHGVVGDMRDAWPSACVRKNVSLIRTYHGFKGDKQGALEFLKLIL 240

Query: 241 RALCLCWDRQTQDLHVDWILFRGRSLIPVVCEVVNDNIDGFYPSSHYPLFSEFMLPRTVR 274
           RALCLCWDRQTQDLH+DWILFRGRSLIPV CEVVNDNIDG+YPSSH+P+F+EFMLPRTVR
Sbjct: 241 RALCLCWDRQTQDLHIDWILFRGRSLIPVSCEVVNDNIDGYYPSSHFPIFAEFMLPRTVR 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08820.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g08820.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0P3J4_GOSAR	4.4e-135	77.44	Uncharacterized protein OS=Gossypium arboreum GN=F383_02575 PE=4 SV=1	[more]
I1JGP9_SOYBN	8.6e-131	75.33	Uncharacterized protein OS=Glycine max GN=GLYMA_02G204100 PE=4 SV=1	[more]
B9IMD6_POPTR	1.9e-130	76.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11590g PE=4 SV=2	[more]
A0A164ZN17_DAUCA	3.3e-130	73.27	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019393 PE=4 SV=1	[more]
A0A0R0F973_SOYBN	3.3e-130	75.66	Uncharacterized protein OS=Glycine max GN=GLYMA_17G073700 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g08820.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30900.1	3.4e-115	65.90	DNAse I-like superfamily protein	[more]

BLAST of Cp4.1LG04g08820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|728841835\|gb\|KHG21278.1\|	6.3e-135	77.44	Uncharacterized protein F383_02575 [Gossypium arboreum]	[more]
gi\|694354423\|ref\|XP_009358437.1\|	3.5e-133	75.91	PREDICTED: uncharacterized protein LOC103949067 [Pyrus x bretschneideri]	[more]
gi\|658063656\|ref\|XP_008367748.1\|	1.7e-132	75.58	PREDICTED: uncharacterized protein LOC103431379 [Malus domestica]	[more]
gi\|1021473638\|ref\|XP_016200253.1\|	8.5e-132	76.64	PREDICTED: uncharacterized protein LOC107641270 [Arachis ipaensis]	[more]
gi\|1012001775\|ref\|XP_015932931.1\|	7.2e-131	76.32	PREDICTED: uncharacterized protein LOC107459225 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g08820	Cp4.1LG04g08820	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g08820.1	Cp4.1LG04g08820.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g08820.1:five_prime_utr:001	Cp4.1LG04g08820.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g08820.1:cds:006	Cp4.1LG04g08820.1:cds:006	CDS
Cp4.1LG04g08820.1:cds:005	Cp4.1LG04g08820.1:cds:005	CDS
Cp4.1LG04g08820.1:cds:004	Cp4.1LG04g08820.1:cds:004	CDS
Cp4.1LG04g08820.1:cds:003	Cp4.1LG04g08820.1:cds:003	CDS
Cp4.1LG04g08820.1:cds:002	Cp4.1LG04g08820.1:cds:002	CDS
Cp4.1LG04g08820.1:cds:001	Cp4.1LG04g08820.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g08820.1:three_prime_utr:001	Cp4.1LG04g08820.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 8..253 score: 2.
IPR005135	Endonuclease/exonuclease/phosphatase	unknown	SSF56219	DNase I-like	coord: 3..267 score: 6.91
None	No IPR available	PANTHER	PTHR12121	CARBON CATABOLITE REPRESSOR PROTEIN 4	coord: 2..273 score: 1.1
None	No IPR available	PANTHER	PTHR12121:SF36	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	coord: 2..273 score: 1.1