Cp4.1LG04g07740.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g07740.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein family
Location	Cp4.1LG04 : 3920809 .. 3921069 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

mRNA sequence

ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

Coding sequence (CDS)

ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

Protein sequence

MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRVFDEMSCRVPTEYMRIQCVD

Homology

[Close]

BLAST of Cp4.1LG04g07740.1 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 6   FAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAM 65
           F+PSIVTYNSLISA+ARDG+LDEAMELK QM EKG +PDVFTYTTLLSGFE+ GK + AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 66  RVFDEM 72
            +F+EM
Sbjct: 405 SIFEEM 410

[Close]

BLAST of Cp4.1LG04g07740.1 vs. Swiss-Prot
Match: PP360_ARATH (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           P IVTYN+LISA++  GL++EA EL   M  KG  P V+TY T+++G  K GK + A  V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 68  FDEM 72
           F EM
Sbjct: 328 FAEM 331

[Close]

BLAST of Cp4.1LG04g07740.1 vs. Swiss-Prot
Match: PPR56_ARATH (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-10
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1


Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           PSIVTYN+LI      G L+ A  LK +M  + I PDV TYTTL+ GF K G    A  V
Sbjct: 407 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466

Query: 68  FDEM 72
           +DEM
Sbjct: 467 YDEM 470

[Close]

BLAST of Cp4.1LG04g07740.1 vs. Swiss-Prot
Match: PP412_ARATH (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-10
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+I TY SLI+ F  +G +DEA ++   M  KG  PDV  YT+L++GF K  K D AM+
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 67  VFDEMS 73
           +F EMS
Sbjct: 339 IFYEMS 344

[Close]

BLAST of Cp4.1LG04g07740.1 vs. Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.7e-10
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1


Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+ +TYNSLI  F ++  L+EA+++   M+ KG +PD+ T+  L++G+ K  + D  + 
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 67  VFDEMSCR 75
           +F EMS R
Sbjct: 425 LFREMSLR 432

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TrEMBL
Match: A0A0A0K4H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 72
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TrEMBL
Match: A0A059AN63_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01083 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-24
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F P+IVTYNSLI A+ARDGLLDEA+ELK QMVE+GI+PDVFTYTTLLSGFEK GK
Sbjct: 347 MELDGFLPTIVTYNSLICAYARDGLLDEAVELKNQMVERGIKPDVFTYTTLLSGFEKAGK 406

Query: 61  DDCAMRVFDEM 72
           DD AMRVFDEM
Sbjct: 407 DDFAMRVFDEM 417

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TrEMBL
Match: B9RY68_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0810720 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-23
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME S F+PSIVTYNSLISA+ARDGLL EAMELK QMVEKGI+PDVFTYTTLLSGFEK G 
Sbjct: 349 MEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGM 408

Query: 61  DDCAMRVFDEM 72
           D+ AMR+F EM
Sbjct: 409 DEPAMRIFGEM 419

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TrEMBL
Match: A0A068TMN6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014524001 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-23
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME + F+P  VTYNSLISA++RDGLL+EAMELK QM+EKGI+PDVFTYTTLLSGFEK GK
Sbjct: 356 MEVNGFSPCAVTYNSLISAYSRDGLLEEAMELKSQMMEKGIKPDVFTYTTLLSGFEKAGK 415

Query: 61  DDCAMRVFDEM 72
           D+ AM+VFDEM
Sbjct: 416 DESAMKVFDEM 426

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TrEMBL
Match: M1CFP0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025851 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-23
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F+PSIVTYNSL+SA+ARDGL++EAMELK +M++KGI+PDVFTYTTL SGFEK GK
Sbjct: 346 MEVHGFSPSIVTYNSLVSAYARDGLMEEAMELKAKMIDKGIKPDVFTYTTLFSGFEKAGK 405

Query: 61  DDCAMRVFDEMS 73
           D+ AMRVF+EM+
Sbjct: 406 DESAMRVFEEMT 417

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-24
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 6   FAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAM 65
           F+PSIVTYNSLISA+ARDG+LDEAMELK QM EKG +PDVFTYTTLLSGFE+ GK + AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 66  RVFDEM 72
            +F+EM
Sbjct: 405 SIFEEM 410

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TAIR10
Match: AT5G01110.1 (AT5G01110.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-12
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1


Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           P IVTYN+LISA++  GL++EA EL   M  KG  P V+TY T+++G  K GK + A  V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 68  FDEM 72
           F EM
Sbjct: 328 FAEM 331

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TAIR10
Match: AT1G22960.1 (AT1G22960.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-11
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1


Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           PSIVTYN+LI      G L+ A  LK +M  + I PDV TYTTL+ GF K G    A  V
Sbjct: 407 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466

Query: 68  FDEM 72
           +DEM
Sbjct: 467 YDEM 470

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TAIR10
Match: AT5G41170.1 (AT5G41170.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-11
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+I TY SLI+ F  +G +DEA ++   M  KG  PDV  YT+L++GF K  K D AM+
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 67  VFDEMS 73
           +F EMS
Sbjct: 339 IFYEMS 344

[Close]

BLAST of Cp4.1LG04g07740.1 vs. TAIR10
Match: AT1G12775.1 (AT1G12775.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1


Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+ +TYNSLI  F ++  L+EA+++   M+ KG +PD+ T+  L++G+ K  + D  + 
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 67  VFDEMSCR 75
           +F EMS R
Sbjct: 425 LFREMSLR 432

[Close]

BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: gi|449438627|ref|XP_004137089.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 72
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]

BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: gi|700188631|gb|KGN43864.1| (hypothetical protein Csa_7G071530 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 72
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]

BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: gi|659110047|ref|XP_008455020.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEA+ELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 370 MEASGFAPSIVTYNSLISAYARDGLLDEAIELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 429

Query: 61  DDCAMRVFDEM 72
           DD AMRVF+EM
Sbjct: 430 DDYAMRVFEEM 440

[Close]

BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: gi|702462301|ref|XP_010028382.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F P+IVTYNSLI A+ARDGLLDEA+ELK QMVE+GI+PDVFTYTTLLSGFEK GK
Sbjct: 347 MELDGFLPTIVTYNSLICAYARDGLLDEAVELKNQMVERGIKPDVFTYTTLLSGFEKAGK 406

Query: 61  DDCAMRVFDEM 72
           DD AMRVFDEM
Sbjct: 407 DDFAMRVFDEM 417

[Close]

BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: gi|702462305|ref|XP_010028383.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F P+IVTYNSLI A+ARDGLLDEA+ELK QMVE+GI+PDVFTYTTLLSGFEK GK
Sbjct: 296 MELDGFLPTIVTYNSLICAYARDGLLDEAVELKNQMVERGIKPDVFTYTTLLSGFEKAGK 355

Query: 61  DDCAMRVFDEM 72
           DD AMRVFDEM
Sbjct: 356 DDFAMRVFDEM 366

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g07740.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP362_ARATH	3.4e-23	77.27	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN...	[more]
PP360_ARATH	6.7e-11	51.56	Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN...	[more]
PPR56_ARATH	2.5e-10	51.56	Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidop...	[more]
PP412_ARATH	3.3e-10	50.00	Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop...	[more]
PPR39_ARATH	5.7e-10	39.71	Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop...	[more]

BLAST of Cp4.1LG04g07740.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4H7_CUCSA	1.8e-26	87.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1	[more]
A0A059AN63_EUCGR	3.7e-24	81.69	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01083 PE=4 SV=1	[more]
B9RY68_RICCO	3.1e-23	81.69	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]
A0A068TMN6_COFCA	4.1e-23	77.46	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014524001 PE=4 SV=1	[more]
M1CFP0_SOLTU	4.1e-23	73.61	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025851 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g07740.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02860.1	1.9e-24	77.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G01110.1	3.8e-12	51.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G22960.1	1.4e-11	51.56	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G41170.1	1.9e-11	50.00	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G12775.1	3.2e-11	39.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cp4.1LG04g07740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438627\|ref\|XP_004137089.1\|	2.5e-26	87.32	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativu...	[more]
gi\|700188631\|gb\|KGN43864.1\|	2.5e-26	87.32	hypothetical protein Csa_7G071530 [Cucumis sativus]	[more]
gi\|659110047\|ref\|XP_008455020.1\|	3.3e-26	87.32	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo]	[more]
gi\|702462301\|ref\|XP_010028382.1\|	5.3e-24	81.69	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X1 [Euc...	[more]
gi\|702462305\|ref\|XP_010028383.1\|	5.3e-24	81.69	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X2 [Euc...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g07740	Cp4.1LG04g07740	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g07740.1:cds:001	Cp4.1LG04g07740.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g07740.1	Cp4.1LG04g07740.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 8..55 score: 6.6
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 11..45 score: 8.5E-12coord: 46..73 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 44..74 score: 9.624coord: 9..43 score: 13
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..71 score: 4.3
None	No IPR available	PANTHER	PTHR24015:SF308	SUBFAMILY NOT NAMED	coord: 1..71 score: 4.3