Cp4.1LG04g07740 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07740
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein family
LocationCp4.1LG04 : 3920809 .. 3921069 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

mRNA sequence

ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

Coding sequence (CDS)

ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

Protein sequence

MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRVFDEMSCRVPTEYMRIQCVD
Homology
[Close]
BLAST of Cp4.1LG04g07740 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 6   FAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAM 65
           F+PSIVTYNSLISA+ARDG+LDEAMELK QM EKG +PDVFTYTTLLSGFE+ GK + AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 66  RVFDEM 72
            +F+EM
Sbjct: 405 SIFEEM 410

[Close]
BLAST of Cp4.1LG04g07740 vs. Swiss-Prot
Match: PP360_ARATH (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           P IVTYN+LISA++  GL++EA EL   M  KG  P V+TY T+++G  K GK + A  V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 68  FDEM 72
           F EM
Sbjct: 328 FAEM 331

[Close]
BLAST of Cp4.1LG04g07740 vs. Swiss-Prot
Match: PPR56_ARATH (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-10
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           PSIVTYN+LI      G L+ A  LK +M  + I PDV TYTTL+ GF K G    A  V
Sbjct: 407 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466

Query: 68  FDEM 72
           +DEM
Sbjct: 467 YDEM 470

[Close]
BLAST of Cp4.1LG04g07740 vs. Swiss-Prot
Match: PP412_ARATH (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-10
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+I TY SLI+ F  +G +DEA ++   M  KG  PDV  YT+L++GF K  K D AM+
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 67  VFDEMS 73
           +F EMS
Sbjct: 339 IFYEMS 344

[Close]
BLAST of Cp4.1LG04g07740 vs. Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.7e-10
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+ +TYNSLI  F ++  L+EA+++   M+ KG +PD+ T+  L++G+ K  + D  + 
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 67  VFDEMSCR 75
           +F EMS R
Sbjct: 425 LFREMSLR 432

[Close]
BLAST of Cp4.1LG04g07740 vs. TrEMBL
Match: A0A0A0K4H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 72
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]
BLAST of Cp4.1LG04g07740 vs. TrEMBL
Match: A0A059AN63_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01083 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-24
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F P+IVTYNSLI A+ARDGLLDEA+ELK QMVE+GI+PDVFTYTTLLSGFEK GK
Sbjct: 347 MELDGFLPTIVTYNSLICAYARDGLLDEAVELKNQMVERGIKPDVFTYTTLLSGFEKAGK 406

Query: 61  DDCAMRVFDEM 72
           DD AMRVFDEM
Sbjct: 407 DDFAMRVFDEM 417

[Close]
BLAST of Cp4.1LG04g07740 vs. TrEMBL
Match: B9RY68_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0810720 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-23
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME S F+PSIVTYNSLISA+ARDGLL EAMELK QMVEKGI+PDVFTYTTLLSGFEK G 
Sbjct: 349 MEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGM 408

Query: 61  DDCAMRVFDEM 72
           D+ AMR+F EM
Sbjct: 409 DEPAMRIFGEM 419

[Close]
BLAST of Cp4.1LG04g07740 vs. TrEMBL
Match: A0A068TMN6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014524001 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-23
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME + F+P  VTYNSLISA++RDGLL+EAMELK QM+EKGI+PDVFTYTTLLSGFEK GK
Sbjct: 356 MEVNGFSPCAVTYNSLISAYSRDGLLEEAMELKSQMMEKGIKPDVFTYTTLLSGFEKAGK 415

Query: 61  DDCAMRVFDEM 72
           D+ AM+VFDEM
Sbjct: 416 DESAMKVFDEM 426

[Close]
BLAST of Cp4.1LG04g07740 vs. TrEMBL
Match: M1CFP0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025851 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-23
Identity = 53/72 (73.61%), Postives = 65/72 (90.28%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F+PSIVTYNSL+SA+ARDGL++EAMELK +M++KGI+PDVFTYTTL SGFEK GK
Sbjct: 346 MEVHGFSPSIVTYNSLVSAYARDGLMEEAMELKAKMIDKGIKPDVFTYTTLFSGFEKAGK 405

Query: 61  DDCAMRVFDEMS 73
           D+ AMRVF+EM+
Sbjct: 406 DESAMRVFEEMT 417

[Close]
BLAST of Cp4.1LG04g07740 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-24
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 

Query: 6   FAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAM 65
           F+PSIVTYNSLISA+ARDG+LDEAMELK QM EKG +PDVFTYTTLLSGFE+ GK + AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 66  RVFDEM 72
            +F+EM
Sbjct: 405 SIFEEM 410

[Close]
BLAST of Cp4.1LG04g07740 vs. TAIR10
Match: AT5G01110.1 (AT5G01110.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-12
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           P IVTYN+LISA++  GL++EA EL   M  KG  P V+TY T+++G  K GK + A  V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 68  FDEM 72
           F EM
Sbjct: 328 FAEM 331

[Close]
BLAST of Cp4.1LG04g07740 vs. TAIR10
Match: AT1G22960.1 (AT1G22960.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-11
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           PSIVTYN+LI      G L+ A  LK +M  + I PDV TYTTL+ GF K G    A  V
Sbjct: 407 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466

Query: 68  FDEM 72
           +DEM
Sbjct: 467 YDEM 470

[Close]
BLAST of Cp4.1LG04g07740 vs. TAIR10
Match: AT5G41170.1 (AT5G41170.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-11
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+I TY SLI+ F  +G +DEA ++   M  KG  PDV  YT+L++GF K  K D AM+
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 67  VFDEMS 73
           +F EMS
Sbjct: 339 IFYEMS 344

[Close]
BLAST of Cp4.1LG04g07740 vs. TAIR10
Match: AT1G12775.1 (AT1G12775.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+ +TYNSLI  F ++  L+EA+++   M+ KG +PD+ T+  L++G+ K  + D  + 
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 67  VFDEMSCR 75
           +F EMS R
Sbjct: 425 LFREMSLR 432

[Close]
BLAST of Cp4.1LG04g07740 vs. NCBI nr
Match: gi|449438627|ref|XP_004137089.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 72
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]
BLAST of Cp4.1LG04g07740 vs. NCBI nr
Match: gi|700188631|gb|KGN43864.1| (hypothetical protein Csa_7G071530 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 72
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]
BLAST of Cp4.1LG04g07740 vs. NCBI nr
Match: gi|659110047|ref|XP_008455020.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEA+ELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 370 MEASGFAPSIVTYNSLISAYARDGLLDEAIELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 429

Query: 61  DDCAMRVFDEM 72
           DD AMRVF+EM
Sbjct: 430 DDYAMRVFEEM 440

[Close]
BLAST of Cp4.1LG04g07740 vs. NCBI nr
Match: gi|702462301|ref|XP_010028382.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F P+IVTYNSLI A+ARDGLLDEA+ELK QMVE+GI+PDVFTYTTLLSGFEK GK
Sbjct: 347 MELDGFLPTIVTYNSLICAYARDGLLDEAVELKNQMVERGIKPDVFTYTTLLSGFEKAGK 406

Query: 61  DDCAMRVFDEM 72
           DD AMRVFDEM
Sbjct: 407 DDFAMRVFDEM 417

[Close]
BLAST of Cp4.1LG04g07740 vs. NCBI nr
Match: gi|702462305|ref|XP_010028383.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME   F P+IVTYNSLI A+ARDGLLDEA+ELK QMVE+GI+PDVFTYTTLLSGFEK GK
Sbjct: 296 MELDGFLPTIVTYNSLICAYARDGLLDEAVELKNQMVERGIKPDVFTYTTLLSGFEKAGK 355

Query: 61  DDCAMRVFDEM 72
           DD AMRVFDEM
Sbjct: 356 DDFAMRVFDEM 366

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP362_ARATH3.4e-2377.27Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN... [more]
PP360_ARATH6.7e-1151.56Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN... [more]
PPR56_ARATH2.5e-1051.56Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidop... [more]
PP412_ARATH3.3e-1050.00Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop... [more]
PPR39_ARATH5.7e-1039.71Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG04g07740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4H7_CUCSA1.8e-2687.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1[more]
A0A059AN63_EUCGR3.7e-2481.69Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01083 PE=4 SV=1[more]
B9RY68_RICCO3.1e-2381.69Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A068TMN6_COFCA4.1e-2377.46Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014524001 PE=4 SV=1[more]
M1CFP0_SOLTU4.1e-2373.61Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025851 PE=4 SV=1[more]
BLAST of Cp4.1LG04g07740 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02860.11.9e-2477.27 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G01110.13.8e-1251.56 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G22960.11.4e-1151.56 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G41170.11.9e-1150.00 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G12775.13.2e-1139.71 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG04g07740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438627|ref|XP_004137089.1|2.5e-2687.32PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativu... [more]
gi|700188631|gb|KGN43864.1|2.5e-2687.32hypothetical protein Csa_7G071530 [Cucumis sativus][more]
gi|659110047|ref|XP_008455020.1|3.3e-2687.32PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo][more]
gi|702462301|ref|XP_010028382.1|5.3e-2481.69PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X1 [Euc... [more]
gi|702462305|ref|XP_010028383.1|5.3e-2481.69PREDICTED: pentatricopeptide repeat-containing protein At5g02860 isoform X2 [Euc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07740.1Cp4.1LG04g07740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..55
score: 6.6
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 11..45
score: 8.5E-12coord: 46..73
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 44..74
score: 9.624coord: 9..43
score: 13
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..71
score: 4.3
NoneNo IPR availablePANTHERPTHR24015:SF308SUBFAMILY NOT NAMEDcoord: 1..71
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07740Carg26997Silver-seed gourdcarcpeB0272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07740Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07740Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g07740Melon (DHL92) v3.6.1cpemedB771
Cp4.1LG04g07740Silver-seed gourdcarcpeB0266
Cp4.1LG04g07740Silver-seed gourdcarcpeB0409
Cp4.1LG04g07740Silver-seed gourdcarcpeB0529
Cp4.1LG04g07740Silver-seed gourdcarcpeB0639
Cp4.1LG04g07740Cucumber (Chinese Long) v3cpecucB0834
Cp4.1LG04g07740Cucumber (Chinese Long) v3cpecucB0847
Cp4.1LG04g07740Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07740Wax gourdcpewgoB0845
Cp4.1LG04g07740Wax gourdcpewgoB0847
Cp4.1LG04g07740Wax gourdcpewgoB0860
Cp4.1LG04g07740Wax gourdcpewgoB0879
Cp4.1LG04g07740Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG04g07740Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07740Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07740Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG04g07740Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g07740Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07740Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07740Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07740Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07740Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07740Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07740Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07740Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07740Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07740Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07740Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07740Bottle gourd (USVL1VR-Ls)cpelsiB552
Cp4.1LG04g07740Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07740Watermelon (Charleston Gray)cpewcgB624
Cp4.1LG04g07740Watermelon (97103) v1cpewmB665
Cp4.1LG04g07740Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07740Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g07740Cucumber (Gy14) v2cgybcpeB969