Cp4.1LG04g07360.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07360.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 4201858 .. 4203214 (+)
Sequence length570
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTGCCATGATCTCGAGTTGCGATGTCGTCGTCAGTCGTACAAGAATGCCTTGCCTTAACTTGAAAAATGTAGTAGCACATGGCTTGAGTATTTAAAGAAATACTCAGTAAGTGACCCCTATCGGGTTTATGCAACAATCACATGCAATGAATGATGGGACCTATCTTTCGTTTCGTTTTCCCTACGGTGCAATCCTAACAGGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGGTGGGCATGCTCTGGGAGCCCTTATACCGGGACCCGTTAAAACTAGAACCGTCACGGCAGCGCTATGCAGGGCATAACGATCGTTGTCCTGCCATTGGATGTACGCGTTCGTACCCTCGTGATGGGATAGGGGTATCCCCTAAATTCATGAACACACAATATGCATGAGGTCCCACTAGTCCTATAGTTATCATTAATGAACATAACCCCGTGTCACGTTTTCATGCTTACATGTCATTCTCATTCTCATTTCGTTATTGTTAGTGGGGTTATGTTTCATGCAATTTATAGTATTTCATGCATTTTAATGAACTTTTGGTATATTTTTATTTTATAGTTGGCTTTAAAAAATAATTTAATTGTGTTGGTATGAATTTATTTATTTTTTAACTATGTGTATAAATATTGTTTTTTTATTTTTTTATTTTGCACAGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAGTTAGTTTGAAAAAGAATTAAATTCAAGCCACTCCCGTTCGGTTGCGTCCTCGCTCCTACTGACGAAGAATTATTGAGCTATTATCTTTTCCACAAGATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCGTGAAAACAAATGTCAATGAGTATTTTCTTCGGTTAATAATATTCTAATTGGTAGCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

mRNA sequence

ATGCATGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

Coding sequence (CDS)

ATGCATGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

Protein sequence

MHVIVDVYHILYTQLIRASMGSPASSHTAGPLSLAVQSSPHAQILESHHQFSNDDMMFANCWRNRFTNCAFIDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALMVPLVPIKRFHYETSKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKIPQIAQQLQQPKQTCMIKSVQ
Homology
[Close]
BLAST of Cp4.1LG04g07360.1 vs. NCBI nr
Match: gi|659085728|ref|XP_008443570.1| (PREDICTED: NAC domain-containing protein 55-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 1 

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           IDLY  EPS IWQ+CGG+D +++Y FTT   K   ++ K+                    
Sbjct: 41  IDLYIHEPSEIWQKCGGVDKQDVYFFTTLKKKKSRIIRKVGSNGNTWSCENRARQVFSST 100

Query: 132 ---VPLVPIKRFHYET--SKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 170
              + L  +KRFHY+   +KD  + ND +W M EYT+DP+++ K  V+D Y+L  +  KI
Sbjct: 101 IDHLLLGSVKRFHYQKPKAKDCTDINDCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKI 160

[Close]
BLAST of Cp4.1LG04g07360.1 vs. NCBI nr
Match: gi|778664815|ref|XP_011660358.1| (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1 

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           IDLYTQEPS IWQQC G+D+K+IY FTT   K   ++ K+                    
Sbjct: 41  IDLYTQEPSQIWQQCRGVDNKDIYFFTTLQKKKSRIIRKVGSNGGTWSGENKPQQVFSST 100

Query: 132 ---VPLVPIKRFHYETSKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 170
              + L  +KRF YE S+ K    D +W M EYT++P ++ +  V+D Y+L  +  KI
Sbjct: 101 IDNLLLGTMKRFRYEKSQVK---EDCTWIMYEYTLNPFIVPEGLVHDSYVLCMIRKKI 155

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07360.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g07360.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g07360.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g07360.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085728|ref|XP_008443570.1|1.6e-1236.67PREDICTED: NAC domain-containing protein 55-like [Cucumis melo][more]
gi|778664815|ref|XP_011660358.1|3.9e-1138.14PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG04g07360Cp4.1LG04g07360gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g07360.1:cds:005Cp4.1LG04g07360.1:cds:005CDS
Cp4.1LG04g07360.1:cds:004Cp4.1LG04g07360.1:cds:004CDS
Cp4.1LG04g07360.1:cds:003Cp4.1LG04g07360.1:cds:003CDS
Cp4.1LG04g07360.1:cds:002Cp4.1LG04g07360.1:cds:002CDS
Cp4.1LG04g07360.1:cds:001Cp4.1LG04g07360.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG04g07360.1Cp4.1LG04g07360.1-proteinpolypeptide