Cp4.1LG04g07360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 4201858 .. 4203214 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTGCCATGATCTCGAGTTGCGATGTCGTCGTCAGTCGTACAAGAATGCCTTGCCTTAACTTGAAAAATGTAGTAGCACATGGCTTGAGTATTTAAAGAAATACTCAGTAAGTGACCCCTATCGGGTTTATGCAACAATCACATGCAATGAATGATGGGACCTATCTTTCGTTTCGTTTTCCCTACGGTGCAATCCTAACAGGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGGTGGGCATGCTCTGGGAGCCCTTATACCGGGACCCGTTAAAACTAGAACCGTCACGGCAGCGCTATGCAGGGCATAACGATCGTTGTCCTGCCATTGGATGTACGCGTTCGTACCCTCGTGATGGGATAGGGGTATCCCCTAAATTCATGAACACACAATATGCATGAGGTCCCACTAGTCCTATAGTTATCATTAATGAACATAACCCCGTGTCACGTTTTCATGCTTACATGTCATTCTCATTCTCATTTCGTTATTGTTAGTGGGGTTATGTTTCATGCAATTTATAGTATTTCATGCATTTTAATGAACTTTTGGTATATTTTTATTTTATAGTTGGCTTTAAAAAATAATTTAATTGTGTTGGTATGAATTTATTTATTTTTTAACTATGTGTATAAATATTGTTTTTTTATTTTTTTATTTTGCACAGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAGTTAGTTTGAAAAAGAATTAAATTCAAGCCACTCCCGTTCGGTTGCGTCCTCGCTCCTACTGACGAAGAATTATTGAGCTATTATCTTTTCCACAAGATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCGTGAAAACAAATGTCAATGAGTATTTTCTTCGGTTAATAATATTCTAATTGGTAGCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

mRNA sequence

ATGCATGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

Coding sequence (CDS)

ATGCATGTAATCGTAGACGTGTATCATATACTTTACACGCAGCTCATACGTGCGAGTATGGGCTCACCAGCTAGTTCGCACACTGCTGGGCCACTGTCCCTAGCCGTCCAGTCCAGTCCACATGCACAAATATTGGAATCACATCATCAATTTTCAAATGATGATATGATGTTTGCAAATTGTTGGAGAAATCGTTTCACCAATTGCGCTTTTATCGATCTTTACACACAAGAGCCTTCTCCAATATGGCAACAATGTGGAGGGATCGATGACAAAGAAATCTACTTATTCACAACTTCAATATTAAAAAATCTCGTGTTATTGGAAAAGTTGGCTCTAATGGTACCACTCGTACCCATCAAACGGTTTCATTACGAGACTTCTAAAGACAAAGTTAATGACAATGATGGTTCTTGGACCATGCGGGAATACACAATTGATCCTACTCTCATACTAAAAGTGTTCGTGTATGATTTTTACCTACTCTCGTCATTGAATACAAAAATCCCTCAAATTGCCCAACAACTACAACAACCCAAACAAACATGTATGATAAAATCTGTACAGTAA

Protein sequence

MHVIVDVYHILYTQLIRASMGSPASSHTAGPLSLAVQSSPHAQILESHHQFSNDDMMFANCWRNRFTNCAFIDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALMVPLVPIKRFHYETSKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKIPQIAQQLQQPKQTCMIKSVQ
Homology
[Close]
BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match: gi|659085728|ref|XP_008443570.1| (PREDICTED: NAC domain-containing protein 55-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 1 

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           IDLY  EPS IWQ+CGG+D +++Y FTT   K   ++ K+                    
Sbjct: 41  IDLYIHEPSEIWQKCGGVDKQDVYFFTTLKKKKSRIIRKVGSNGNTWSCENRARQVFSST 100

Query: 132 ---VPLVPIKRFHYET--SKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 170
              + L  +KRFHY+   +KD  + ND +W M EYT+DP+++ K  V+D Y+L  +  KI
Sbjct: 101 IDHLLLGSVKRFHYQKPKAKDCTDINDCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKI 160

[Close]
BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match: gi|778664815|ref|XP_011660358.1| (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1 

Query: 72  IDLYTQEPSPIWQQCGGIDDKEIYLFTTSILKNLVLLEKLALM----------------- 131
           IDLYTQEPS IWQQC G+D+K+IY FTT   K   ++ K+                    
Sbjct: 41  IDLYTQEPSQIWQQCRGVDNKDIYFFTTLQKKKSRIIRKVGSNGGTWSGENKPQQVFSST 100

Query: 132 ---VPLVPIKRFHYETSKDKVNDNDGSWTMREYTIDPTLILKVFVYDFYLLSSLNTKI 170
              + L  +KRF YE S+ K    D +W M EYT++P ++ +  V+D Y+L  +  KI
Sbjct: 101 IDNLLLGTMKRFRYEKSQVK---EDCTWIMYEYTLNPFIVPEGLVHDSYVLCMIRKKI 155

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g07360 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g07360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g07360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085728|ref|XP_008443570.1|1.6e-1236.67PREDICTED: NAC domain-containing protein 55-like [Cucumis melo][more]
gi|778664815|ref|XP_011660358.1|3.9e-1138.14PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07360.1Cp4.1LG04g07360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07360Cucumber (Chinese Long) v3cpecucB0867
Cp4.1LG04g07360Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07360Wax gourdcpewgoB0856
Cp4.1LG04g07360Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07360Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07360Cucumber (Gy14) v1cgycpeB0601
Cp4.1LG04g07360Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07360Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07360Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07360Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07360Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07360Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07360Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07360Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07360Wild cucumber (PI 183967)cpecpiB696
Cp4.1LG04g07360Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07360Cucumber (Chinese Long) v2cpecuB694
Cp4.1LG04g07360Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07360Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07360Bottle gourd (USVL1VR-Ls)cpelsiB548
Cp4.1LG04g07360Watermelon (Charleston Gray)cpewcgB576
Cp4.1LG04g07360Watermelon (97103) v1cpewmB627
Cp4.1LG04g07360Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07360Melon (DHL92) v3.5.1cpemeB614
Cp4.1LG04g07360Cucumber (Gy14) v2cgybcpeB967
Cp4.1LG04g07360Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07360Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07360Melon (DHL92) v3.6.1cpemedB726
Cp4.1LG04g07360Melon (DHL92) v3.6.1cpemedB769
Cp4.1LG04g07360Silver-seed gourdcarcpeB0409
Cp4.1LG04g07360Silver-seed gourdcarcpeB0529
Cp4.1LG04g07360Silver-seed gourdcarcpeB1033