Cp4.1LG04g07350.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG04g07350.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 4200446 .. 4201363 (+)
Sequence length600
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTGCAAGTTAGTTTGAAAAAGAATTAAATTCAAGCCACTTCTGTTCGGTTGCGTCCTCGCTCCTGCTGACGAAGAATATTGAGCTATTATCTTTTCGACAAGATTGTTGGAGAAACCGTTCCACCAATTTCGCTTCCTGTGATCGATATTTACACACAAGAGCCTTCTTTGATATGGCAACAATGTGGAGGGGTCAATGACAAAGAAATCTACTTCTTCACCAACTCCAATAAGAAGAAATCTGGTGTTATAGAAAAACAATGTGGAAGGATTGATGACAAAGAAATCTACCCCTTCACCAACTTCAATAAGAAGAAATATGGTATTATTAGAAAAGTTGTCTCTGGTGACACTTGAACCGGTGAAAATAAAGGTCAACAAGTATTTAATGTCCTAATTGCTAGCATCAAACGGTTTCATTACGAGACTACTAAATACAAAGCTAATGACAATGATTGTTCTTGGATCATGTGGGAGAACACAAGTGATCATACTTTCAGACCTAAAGAATTCATGCATGATTCCTACGTACTCTACATGATTCGAAGGAGGATGTTAAAAAACGTAAAAAATGCAGTCTCGATAAGAATACAAAAATCATTTGCCTCAAATTGCCTAACCAACAACAACCACTACAACAATGCATGTATGATCAAAATTCTGAACTACAACAAATCACTCCGAACATGAATGTTAAGTATCATTTCTTATCTAATGGTATATTTTTATTTTATAATTGGCTTTAAAAACTAATTTAATTGTGTTGAAATGAATTTATTTATTTTTTAACCATGTTCATAAATATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTGCACAGTAGTCCAGTCCACATGCCTAAATATTGGAATCACATCATCAATTTTCAAAGGATGA

mRNA sequence

ATGATAATATTGAGCTATTATCTTTTCGACAAGATTGTTGGAGAAACCGTTCCACCAATTTCGCTTCCTGTGATCGATATTTACACACAAGAGCCTTCTTTGATATGGCAACAATGTGGAGGGGTCAATGACAAAGAAATCTACTTCTTCACCAACTCCAATAAGAAGAAATCTGGTGTTATAGAAAAACAATGTGGAAGGATTGATGACAAAGAAATCTACCCCTTCACCAACTTCAATAAGAAGAAATATGAAAAGTTGTCTCTGGTGACACTTGAACCGGTGAAAATAAAGGTCAACAACATCAAACGGTTTCATTACGAGACTACTAAATACAAAGCTAATGACAATGATTGTTCTTGGATCATGTGGGAGAACACAAGTGATCATACTTTCAGACCTAAAGAATTCATGCATGATTCCTACGTACTCTACATGATTCGAAGGAGGATGTTAAAAAACGTAAAAAATGCAGTCTCGATAAGAATACAAAAATCATTTGCCTCAAATTGCCTAACCAACAACAACCACTACAACAATGCATTAGTCCAGTCCACATGCCTAAATATTGGAATCACATCATCAATTTTCAAAGGATGA

Coding sequence (CDS)

ATGATAATATTGAGCTATTATCTTTTCGACAAGATTGTTGGAGAAACCGTTCCACCAATTTCGCTTCCTGTGATCGATATTTACACACAAGAGCCTTCTTTGATATGGCAACAATGTGGAGGGGTCAATGACAAAGAAATCTACTTCTTCACCAACTCCAATAAGAAGAAATCTGGTGTTATAGAAAAACAATGTGGAAGGATTGATGACAAAGAAATCTACCCCTTCACCAACTTCAATAAGAAGAAATATGAAAAGTTGTCTCTGGTGACACTTGAACCGGTGAAAATAAAGGTCAACAACATCAAACGGTTTCATTACGAGACTACTAAATACAAAGCTAATGACAATGATTGTTCTTGGATCATGTGGGAGAACACAAGTGATCATACTTTCAGACCTAAAGAATTCATGCATGATTCCTACGTACTCTACATGATTCGAAGGAGGATGTTAAAAAACGTAAAAAATGCAGTCTCGATAAGAATACAAAAATCATTTGCCTCAAATTGCCTAACCAACAACAACCACTACAACAATGCATTAGTCCAGTCCACATGCCTAAATATTGGAATCACATCATCAATTTTCAAAGGATGA

Protein sequence

MIILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIEKQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKANDNDCSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCLTNNNHYNNALVQSTCLNIGITSSIFKG
BLAST of Cp4.1LG04g07350.1 vs. TrEMBL
Match: A0A0A0LWA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-23
Identity = 71/173 (41.04%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYL+ K+VG  VPPI L V+DIYT+EP  IWQQCGGV+ ++++FFT   KKKS V+ 
Sbjct: 12  LLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTCLKKKKSRVVR 71

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA---NDNDC 122
           K         + P  N      E  +          V + KRFHYE  K K    ++N+ 
Sbjct: 72  K---------VGP--NGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 131

Query: 123 SWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCL 173
           SWIM+E T      P+  +H S+VL+M+R+++LK  K A S   Q    S+CL
Sbjct: 132 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSAIKQ---TSSCL 170

BLAST of Cp4.1LG04g07350.1 vs. TrEMBL
Match: A0A0A0L807_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 68/168 (40.48%), Postives = 94/168 (55.95%), Query Frame = 1

Query: 3   ILSYYLFDKI--VGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGV 62
           +L YYL+ KI  VG  +PPI LPV+DIYT+E S IWQQC GV+ ++++FF    KKKS  
Sbjct: 19  LLCYYLYHKITIVGGFIPPIMLPVVDIYTKESSQIWQQCRGVHGQDVHFFICLKKKKSCA 78

Query: 63  IEK--QCGRI---DDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA- 122
           + K    G I   + K    F++ N          TL      V   K FHYE  K K  
Sbjct: 79  VRKVGPNGAIWSGESKATKVFSHNN----------TL------VGAFKLFHYENPKMKKD 138

Query: 123 --NDNDCSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVS 161
             ++N+ SWIM+E T      P+  +H S+VL+M+R+++LK  K A S
Sbjct: 139 GHHNNNYSWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFS 170

BLAST of Cp4.1LG04g07350.1 vs. NCBI nr
Match: gi|659085728|ref|XP_008443570.1| (PREDICTED: NAC domain-containing protein 55-like [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 4.5e-26
Identity = 71/182 (39.01%), Postives = 109/182 (59.89%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYLF+K++GE  P + LPVID+Y  EPS IWQ+CGGV+ +++YFFT   KKKS +I 
Sbjct: 19  LLGYYLFNKVLGEQAPLLELPVIDLYIHEPSEIWQKCGGVDKQDVYFFTTLKKKKSRIIR 78

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPV--KIKVNNIKRFHYETTKYK--ANDND 122
           K             +N N    E  +          + + ++KRFHY+  K K   + ND
Sbjct: 79  K-----------VGSNGNTWSCENRARQVFSSTIDHLLLGSVKRFHYQKPKAKDCTDIND 138

Query: 123 CSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCLTNNNHY 181
           C+WIM+E T D +  PK  +HDSYVL MIR++++K+ K  ++ + ++  +SN  T + H 
Sbjct: 139 CTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKIVKSQKIVMTSK-KRQISSNWPTTSMHV 188

BLAST of Cp4.1LG04g07350.1 vs. NCBI nr
Match: gi|778664815|ref|XP_011660358.1| (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 5.0e-25
Identity = 69/178 (38.76%), Postives = 108/178 (60.67%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYL+ K++GE   P+ LPVID+YTQEPS IWQQC GV++K+IYFFT   KKKS +I 
Sbjct: 19  LLGYYLYSKVLGEQASPLVLPVIDLYTQEPSQIWQQCRGVDNKDIYFFTTLQKKKSRIIR 78

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKANDNDCSWI 122
           K             T   + K +++   T++   + +  +KRF YE ++ K    DC+WI
Sbjct: 79  KVGSN-------GGTWSGENKPQQVFSSTID--NLLLGTMKRFRYEKSQVK---EDCTWI 138

Query: 123 MWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCLTNNNHYNN 181
           M+E T +    P+  +HDSYVL MIR++++K+ K  ++   +++  +N    + H +N
Sbjct: 139 MYEYTLNPFIVPEGLVHDSYVLCMIRKKIVKSEKMVMASNKRRASNNNWPMTSMHVDN 184

BLAST of Cp4.1LG04g07350.1 vs. NCBI nr
Match: gi|700210011|gb|KGN65107.1| (hypothetical protein Csa_1G224380 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 6.1e-23
Identity = 71/173 (41.04%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYL+ K+VG  VPPI L V+DIYT+EP  IWQQCGGV+ ++++FFT   KKKS V+ 
Sbjct: 12  LLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTCLKKKKSRVVR 71

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA---NDNDC 122
           K         + P  N      E  +          V + KRFHYE  K K    ++N+ 
Sbjct: 72  K---------VGP--NGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 131

Query: 123 SWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCL 173
           SWIM+E T      P+  +H S+VL+M+R+++LK  K A S   Q    S+CL
Sbjct: 132 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSAIKQ---TSSCL 170

BLAST of Cp4.1LG04g07350.1 vs. NCBI nr
Match: gi|700201123|gb|KGN56256.1| (hypothetical protein Csa_3G110040 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 68/168 (40.48%), Postives = 94/168 (55.95%), Query Frame = 1

Query: 3   ILSYYLFDKI--VGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGV 62
           +L YYL+ KI  VG  +PPI LPV+DIYT+E S IWQQC GV+ ++++FF    KKKS  
Sbjct: 19  LLCYYLYHKITIVGGFIPPIMLPVVDIYTKESSQIWQQCRGVHGQDVHFFICLKKKKSCA 78

Query: 63  IEK--QCGRI---DDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA- 122
           + K    G I   + K    F++ N          TL      V   K FHYE  K K  
Sbjct: 79  VRKVGPNGAIWSGESKATKVFSHNN----------TL------VGAFKLFHYENPKMKKD 138

Query: 123 --NDNDCSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVS 161
             ++N+ SWIM+E T      P+  +H S+VL+M+R+++LK  K A S
Sbjct: 139 GHHNNNYSWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFS 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWA5_CUCSA4.2e-2341.04Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1[more]
A0A0A0L807_CUCSA2.8e-1940.48Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659085728|ref|XP_008443570.1|4.5e-2639.01PREDICTED: NAC domain-containing protein 55-like [Cucumis melo][more]
gi|778664815|ref|XP_011660358.1|5.0e-2538.76PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus][more]
gi|700210011|gb|KGN65107.1|6.1e-2341.04hypothetical protein Csa_1G224380 [Cucumis sativus][more]
gi|700201123|gb|KGN56256.1|4.1e-1940.48hypothetical protein Csa_3G110040 [Cucumis sativus][more]
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003441NAC-dom
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG04g07350Cp4.1LG04g07350gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g07350.1:cds:005Cp4.1LG04g07350.1:cds:005CDS
Cp4.1LG04g07350.1:cds:004Cp4.1LG04g07350.1:cds:004CDS
Cp4.1LG04g07350.1:cds:003Cp4.1LG04g07350.1:cds:003CDS
Cp4.1LG04g07350.1:cds:002Cp4.1LG04g07350.1:cds:002CDS
Cp4.1LG04g07350.1:cds:001Cp4.1LG04g07350.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG04g07350.1Cp4.1LG04g07350.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003441NAC domainPROFILEPS51005NACcoord: 1..150
score:
IPR003441NAC domainunknownSSF101941NAC domaincoord: 3..147
score: 1.0