Cp4.1LG04g07350 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG04g07350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 4200446 .. 4201363 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTGCAAGTTAGTTTGAAAAAGAATTAAATTCAAGCCACTTCTGTTCGGTTGCGTCCTCGCTCCTGCTGACGAAGAATATTGAGCTATTATCTTTTCGACAAGATTGTTGGAGAAACCGTTCCACCAATTTCGCTTCCTGTGATCGATATTTACACACAAGAGCCTTCTTTGATATGGCAACAATGTGGAGGGGTCAATGACAAAGAAATCTACTTCTTCACCAACTCCAATAAGAAGAAATCTGGTGTTATAGAAAAACAATGTGGAAGGATTGATGACAAAGAAATCTACCCCTTCACCAACTTCAATAAGAAGAAATATGGTATTATTAGAAAAGTTGTCTCTGGTGACACTTGAACCGGTGAAAATAAAGGTCAACAAGTATTTAATGTCCTAATTGCTAGCATCAAACGGTTTCATTACGAGACTACTAAATACAAAGCTAATGACAATGATTGTTCTTGGATCATGTGGGAGAACACAAGTGATCATACTTTCAGACCTAAAGAATTCATGCATGATTCCTACGTACTCTACATGATTCGAAGGAGGATGTTAAAAAACGTAAAAAATGCAGTCTCGATAAGAATACAAAAATCATTTGCCTCAAATTGCCTAACCAACAACAACCACTACAACAATGCATGTATGATCAAAATTCTGAACTACAACAAATCACTCCGAACATGAATGTTAAGTATCATTTCTTATCTAATGGTATATTTTTATTTTATAATTGGCTTTAAAAACTAATTTAATTGTGTTGAAATGAATTTATTTATTTTTTAACCATGTTCATAAATATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTGCACAGTAGTCCAGTCCACATGCCTAAATATTGGAATCACATCATCAATTTTCAAAGGATGA

mRNA sequence

ATGATAATATTGAGCTATTATCTTTTCGACAAGATTGTTGGAGAAACCGTTCCACCAATTTCGCTTCCTGTGATCGATATTTACACACAAGAGCCTTCTTTGATATGGCAACAATGTGGAGGGGTCAATGACAAAGAAATCTACTTCTTCACCAACTCCAATAAGAAGAAATCTGGTGTTATAGAAAAACAATGTGGAAGGATTGATGACAAAGAAATCTACCCCTTCACCAACTTCAATAAGAAGAAATATGAAAAGTTGTCTCTGGTGACACTTGAACCGGTGAAAATAAAGGTCAACAACATCAAACGGTTTCATTACGAGACTACTAAATACAAAGCTAATGACAATGATTGTTCTTGGATCATGTGGGAGAACACAAGTGATCATACTTTCAGACCTAAAGAATTCATGCATGATTCCTACGTACTCTACATGATTCGAAGGAGGATGTTAAAAAACGTAAAAAATGCAGTCTCGATAAGAATACAAAAATCATTTGCCTCAAATTGCCTAACCAACAACAACCACTACAACAATGCATTAGTCCAGTCCACATGCCTAAATATTGGAATCACATCATCAATTTTCAAAGGATGA

Coding sequence (CDS)

ATGATAATATTGAGCTATTATCTTTTCGACAAGATTGTTGGAGAAACCGTTCCACCAATTTCGCTTCCTGTGATCGATATTTACACACAAGAGCCTTCTTTGATATGGCAACAATGTGGAGGGGTCAATGACAAAGAAATCTACTTCTTCACCAACTCCAATAAGAAGAAATCTGGTGTTATAGAAAAACAATGTGGAAGGATTGATGACAAAGAAATCTACCCCTTCACCAACTTCAATAAGAAGAAATATGAAAAGTTGTCTCTGGTGACACTTGAACCGGTGAAAATAAAGGTCAACAACATCAAACGGTTTCATTACGAGACTACTAAATACAAAGCTAATGACAATGATTGTTCTTGGATCATGTGGGAGAACACAAGTGATCATACTTTCAGACCTAAAGAATTCATGCATGATTCCTACGTACTCTACATGATTCGAAGGAGGATGTTAAAAAACGTAAAAAATGCAGTCTCGATAAGAATACAAAAATCATTTGCCTCAAATTGCCTAACCAACAACAACCACTACAACAATGCATTAGTCCAGTCCACATGCCTAAATATTGGAATCACATCATCAATTTTCAAAGGATGA

Protein sequence

MIILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIEKQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKANDNDCSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCLTNNNHYNNALVQSTCLNIGITSSIFKG
BLAST of Cp4.1LG04g07350 vs. TrEMBL
Match: A0A0A0LWA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.2e-23
Identity = 71/173 (41.04%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYL+ K+VG  VPPI L V+DIYT+EP  IWQQCGGV+ ++++FFT   KKKS V+ 
Sbjct: 12  LLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTCLKKKKSRVVR 71

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA---NDNDC 122
           K         + P  N      E  +          V + KRFHYE  K K    ++N+ 
Sbjct: 72  K---------VGP--NGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 131

Query: 123 SWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCL 173
           SWIM+E T      P+  +H S+VL+M+R+++LK  K A S   Q    S+CL
Sbjct: 132 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSAIKQ---TSSCL 170

BLAST of Cp4.1LG04g07350 vs. TrEMBL
Match: A0A0A0L807_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 68/168 (40.48%), Postives = 94/168 (55.95%), Query Frame = 1

Query: 3   ILSYYLFDKI--VGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGV 62
           +L YYL+ KI  VG  +PPI LPV+DIYT+E S IWQQC GV+ ++++FF    KKKS  
Sbjct: 19  LLCYYLYHKITIVGGFIPPIMLPVVDIYTKESSQIWQQCRGVHGQDVHFFICLKKKKSCA 78

Query: 63  IEK--QCGRI---DDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA- 122
           + K    G I   + K    F++ N          TL      V   K FHYE  K K  
Sbjct: 79  VRKVGPNGAIWSGESKATKVFSHNN----------TL------VGAFKLFHYENPKMKKD 138

Query: 123 --NDNDCSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVS 161
             ++N+ SWIM+E T      P+  +H S+VL+M+R+++LK  K A S
Sbjct: 139 GHHNNNYSWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFS 170

BLAST of Cp4.1LG04g07350 vs. NCBI nr
Match: gi|659085728|ref|XP_008443570.1| (PREDICTED: NAC domain-containing protein 55-like [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 4.5e-26
Identity = 71/182 (39.01%), Postives = 109/182 (59.89%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYLF+K++GE  P + LPVID+Y  EPS IWQ+CGGV+ +++YFFT   KKKS +I 
Sbjct: 19  LLGYYLFNKVLGEQAPLLELPVIDLYIHEPSEIWQKCGGVDKQDVYFFTTLKKKKSRIIR 78

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPV--KIKVNNIKRFHYETTKYK--ANDND 122
           K             +N N    E  +          + + ++KRFHY+  K K   + ND
Sbjct: 79  K-----------VGSNGNTWSCENRARQVFSSTIDHLLLGSVKRFHYQKPKAKDCTDIND 138

Query: 123 CSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCLTNNNHY 181
           C+WIM+E T D +  PK  +HDSYVL MIR++++K+ K  ++ + ++  +SN  T + H 
Sbjct: 139 CTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKIVKSQKIVMTSK-KRQISSNWPTTSMHV 188

BLAST of Cp4.1LG04g07350 vs. NCBI nr
Match: gi|778664815|ref|XP_011660358.1| (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 5.0e-25
Identity = 69/178 (38.76%), Postives = 108/178 (60.67%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYL+ K++GE   P+ LPVID+YTQEPS IWQQC GV++K+IYFFT   KKKS +I 
Sbjct: 19  LLGYYLYSKVLGEQASPLVLPVIDLYTQEPSQIWQQCRGVDNKDIYFFTTLQKKKSRIIR 78

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKANDNDCSWI 122
           K             T   + K +++   T++   + +  +KRF YE ++ K    DC+WI
Sbjct: 79  KVGSN-------GGTWSGENKPQQVFSSTID--NLLLGTMKRFRYEKSQVK---EDCTWI 138

Query: 123 MWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCLTNNNHYNN 181
           M+E T +    P+  +HDSYVL MIR++++K+ K  ++   +++  +N    + H +N
Sbjct: 139 MYEYTLNPFIVPEGLVHDSYVLCMIRKKIVKSEKMVMASNKRRASNNNWPMTSMHVDN 184

BLAST of Cp4.1LG04g07350 vs. NCBI nr
Match: gi|700210011|gb|KGN65107.1| (hypothetical protein Csa_1G224380 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 6.1e-23
Identity = 71/173 (41.04%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 3   ILSYYLFDKIVGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGVIE 62
           +L YYL+ K+VG  VPPI L V+DIYT+EP  IWQQCGGV+ ++++FFT   KKKS V+ 
Sbjct: 12  LLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTCLKKKKSRVVR 71

Query: 63  KQCGRIDDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA---NDNDC 122
           K         + P  N      E  +          V + KRFHYE  K K    ++N+ 
Sbjct: 72  K---------VGP--NGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKGGHHNNNY 131

Query: 123 SWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVSIRIQKSFASNCL 173
           SWIM+E T      P+  +H S+VL+M+R+++LK  K A S   Q    S+CL
Sbjct: 132 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFSAIKQ---TSSCL 170

BLAST of Cp4.1LG04g07350 vs. NCBI nr
Match: gi|700201123|gb|KGN56256.1| (hypothetical protein Csa_3G110040 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-19
Identity = 68/168 (40.48%), Postives = 94/168 (55.95%), Query Frame = 1

Query: 3   ILSYYLFDKI--VGETVPPISLPVIDIYTQEPSLIWQQCGGVNDKEIYFFTNSNKKKSGV 62
           +L YYL+ KI  VG  +PPI LPV+DIYT+E S IWQQC GV+ ++++FF    KKKS  
Sbjct: 19  LLCYYLYHKITIVGGFIPPIMLPVVDIYTKESSQIWQQCRGVHGQDVHFFICLKKKKSCA 78

Query: 63  IEK--QCGRI---DDKEIYPFTNFNKKKYEKLSLVTLEPVKIKVNNIKRFHYETTKYKA- 122
           + K    G I   + K    F++ N          TL      V   K FHYE  K K  
Sbjct: 79  VRKVGPNGAIWSGESKATKVFSHNN----------TL------VGAFKLFHYENPKMKKD 138

Query: 123 --NDNDCSWIMWENTSDHTFRPKEFMHDSYVLYMIRRRMLKNVKNAVS 161
             ++N+ SWIM+E T      P+  +H S+VL+M+R+++LK  K A S
Sbjct: 139 GHHNNNYSWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKRAFS 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWA5_CUCSA4.2e-2341.04Uncharacterized protein OS=Cucumis sativus GN=Csa_1G224380 PE=4 SV=1[more]
A0A0A0L807_CUCSA2.8e-1940.48Uncharacterized protein OS=Cucumis sativus GN=Csa_3G110040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659085728|ref|XP_008443570.1|4.5e-2639.01PREDICTED: NAC domain-containing protein 55-like [Cucumis melo][more]
gi|778664815|ref|XP_011660358.1|5.0e-2538.76PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus][more]
gi|700210011|gb|KGN65107.1|6.1e-2341.04hypothetical protein Csa_1G224380 [Cucumis sativus][more]
gi|700201123|gb|KGN56256.1|4.1e-1940.48hypothetical protein Csa_3G110040 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003441NAC-dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07350.1Cp4.1LG04g07350.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003441NAC domainPROFILEPS51005NACcoord: 1..150
score:
IPR003441NAC domainunknownSSF101941NAC domaincoord: 3..147
score: 1.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07350Silver-seed gourdcarcpeB0409
Cp4.1LG04g07350Silver-seed gourdcarcpeB0529
Cp4.1LG04g07350Silver-seed gourdcarcpeB1033
Cp4.1LG04g07350Cucumber (Chinese Long) v3cpecucB0867
Cp4.1LG04g07350Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07350Wax gourdcpewgoB0856
Cp4.1LG04g07350Cucurbita pepo (Zucchini)cpecpeB269
Cp4.1LG04g07350Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07350Cucumber (Gy14) v1cgycpeB0601
Cp4.1LG04g07350Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07350Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07350Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07350Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07350Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07350Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07350Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07350Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07350Wild cucumber (PI 183967)cpecpiB696
Cp4.1LG04g07350Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07350Cucumber (Chinese Long) v2cpecuB694
Cp4.1LG04g07350Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07350Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07350Bottle gourd (USVL1VR-Ls)cpelsiB548
Cp4.1LG04g07350Watermelon (Charleston Gray)cpewcgB576
Cp4.1LG04g07350Watermelon (97103) v1cpewmB627
Cp4.1LG04g07350Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07350Melon (DHL92) v3.5.1cpemeB614
Cp4.1LG04g07350Cucumber (Gy14) v2cgybcpeB967
Cp4.1LG04g07350Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07350Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07350Melon (DHL92) v3.6.1cpemedB726
Cp4.1LG04g07350Melon (DHL92) v3.6.1cpemedB769