Cp4.1LG04g02460.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g02460.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Actin-related protein 2/3 complex subunit 1A
Location	Cp4.1LG04 : 7777771 .. 7783159 (+)
Sequence length	1824

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGTTGGCGCACAGAGAATCTTTCTTAACATACACGGCTGCTGGTTTTCGCCATGGTCGCTTTCCTTTTTGGATCGCATTCGTATTTCTGAGATCTCCCTCGCGCGCGCCTGTATTTCTCAATCACTTCTAAGACTTTTATCTTAAAAGTCCCTACCAATCGCAAATCAAATTCACCGAGAAGCTGGAATTTCGAGCCGTCGTTGATTCCTGAGAATTTCCAATATTCTCTACTGGAGCTGGGAAAACAATGACAGCAATTGCAGTTCACGGGTTCGCTCAGTGCATCACTTGCCATGCTTGGAGTCCTGATCACTCTAGTAATTAACCTTTCTCTTTTTGCTCGCTTTCTTTATTTAATCGTTCTGTTTTCTGAGGGTGAAATGGAATGGAAATGTCGAGTTTCTGTAATTTGTTTGTCCTCAGTTCAGGAAAAAGTTGAACCAAAATACTTAGACGTGGATTTTATATATTGAGATCGCGTATCTATGTTTCCTGAGCTATCAAAGAGAGGGCAATGATATCAATTCAGCTGAGCGATCTAGATTTAGTTTGCTTTATTGATGAATGATGGGAAGAACGCCAGGATAGGTTACTTGGGCTCAACCTCCACCCTGTTGAAAATACGATAACCCATACGTCTTATGGGGTAGGATACATGCTAATTATGCTGTTGACTAGCTTCACGAGATCTGTTTACTGATCTGATCATTCTGGGAATAACCAATATGTCTTATGGGGTAGGATACATGCTAAAATTCATGGAGAAATGGGCTGTTATCGAATCGGCTGCTAAGTTTTTCAGGTCACCCGGGGGACATTCGTTTGTTACTTTGTTACTTCAATGCTCTCCATTGTCTAATAATCAAAAGGACGATTTTATTCAATTGTTGTTTAGATTCATCATCTGACTGTGCTTATGCTAATGTTCTTGATATGTTTTATAGTGGTTGCATTTTGTCCCAACAACAATGAAGTTCACATTTATAAATCAGTACAAGACAACTGGGAGAGAATACATGTTCTTCAAAAGGTATCTTTTAACTTTACTGTTTCCATTTATAATTTATGAGAAAATATGAAACCTAAGGTCACTGCATTTATCTATTCATGATCGATGTTTTTTGTTTTCATTCCAATCTTTTGAGTTAGGTTAAGTGAAATCTTTCTAATGAAGGCATGTTGTTAATGTCTATTAATTTATCTACTTTGTCTGTGTCAGCACGATCAAATTATCTCTGGGATAGACTGGAGTGTGAAGTCAAACAGAATTGTGACTGCATCACATGATCGAAATTCGTAAGTGTTATCTCATATTCTTGTTTTTTTTGGTCCAGTTATTTGTACGTTCACTGGTTTCTTATCTTTTCACTTTTTTTCACTCCAGTTATCACCCCTTCCTTCCCCCAGCCTCTTCTGGCCTCTCTCAGATAATATTTTGGGAATTTTATTTATTTATATGTTCCACATTGGCCTACCAATCTCTTTTCTTTCTAGATATGTTTGGAACCTTGAAGGATCAGAATGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGGTAGTGCAAAATGTCCTACCCTGCTCTTGCTCATCACTTATGTTATCCACATCATCCTTAAATTTCTACGTTTTGCATTATCCATCTTACCCCTAGAAAACAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAACAAGAGAACAATTGGTATGGCTCTTTCTCACTTTTTGTTCAAGTCATCGTGTCTATTGCCTTTATTTTACACGAAGATGGAAACTCTGCTAGATGATGAATTTATTGCTAATATTTCTTATCTGTAATCTTTTTGTTTCTTTGGCTTTGTAATCAATGCTTTAGTTTATTTTTGAATCATAATTAATTCTTATCAGAAATGAAACAACTCTTTATCATTGCTTCACCTAGTATGCTTACGCATTAGTTTTCCATATTTAACATGATCATGGTTTACCTTCCACAGGTGGGTCAGTAAACTTCTCAGGAAAAGGCATGATTCTTCTGTGACAAATGTCGCTTGGCATCCCAATAATGTTTGTTTTACCCTTCTTTCCACCGTTTCATATGAATTTATATGGACAAATTTTTTGATCTTTTTAGAAGATTTCCAGTTATATCTTAGTGCTTGCTTGTCACTTTGTTTTTCTGAGCAAAATTATGGCTGTGTTTTTCGGTTATGAATTTTCCCTTATATTTTATTCACAGCTTCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATATTTTCCACCTTCATTAAAGGTGTTGACACAAAGTATGTAGAGAGTAGTTTAGACTGCAGTCTTCTCATGAAATATTATAGGATTGATTTAGAAGTTACTGATGCTTGATTGAAATTTCACAGGGATTCAAAAGCCGGCGCATTTTCAGATTCAAAATTCGGAGAGGTTTAATATTCAGACTTTTAATTTGCAGTGAACAAAATTTCTTGTGCTTGGAAGAGTAGAATGCTTAAATTTTTTTTTATAAAATAACTAAAAGTGTTTTTGGATTGTCATCTTTTGATTCAAATTTAAATGATTTGAATTTCTCCCTTTGGAAAAGACATGGTTCAGTATTTTTGTCCACAGTTGCTCTCTACTTTGACGAGCAAAGTAGTTCCTATTATTTATGAGCAATTTCTTTTGGTGAATTAGTTAATTGTTCAGCTCGATCTCTCATTCTCTTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAAAACCTTAGCTTATGCAGGTTAGAAGTACCTCCTCTCTGCAAATTATTTACAGAGACAACTTTATAAGTTACAACTACAGCATATGGAATAGCAACAAGTTTGAATTTACAGAGACAAGTTTGAATTGTCTAATACATTTGCTTCTTATAGTCATACTGCCTTCCTTATAAATTGGGTAAGTTTTTTTCCATAAACATCATGGATAATACATCCATTTTGTAAATTTCAATCATCAATGAAATCGTCTCTTGTAAAAAAAAAAAAAAAAAATTCATTGGTTAGCTTCCTATAACTTGTACATAACAATTGTAACTATGAAATTTCCCCCATTATTTTAGTTACCTTTTGTTTGGGGCGTTGAAAACAATTTATAGGATTCAACTAGAGTCTCATTTTTTATGCTCTTGTTTAGATGGTGGTTTATTTGTACGCTACTGAAGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAATTTAAATGCTGAAGGTCACAATTCGATGATTTACTTTGTTGATGAAATTGGTCCTTCCCCTCTAGCCCAGAATGTTGCACTTCGAGATTTGCCTCTTCGTGATGTGGGTCAGCATCCATTTTTCTTTACTCTTTGAGTATTTCTTATAATTATTTAAATACAATGTACTATTTCGCTTTCTAATCTTGAAGGTTTTTTGGATCAATATAACACTCTTTCAGATACTATTTGTTAGTGAGAGAATGGTTATAGGTGTAGGATTCGATTGCAATCCTATGGTTTTTGCTGCTGATGAAAGAGGGATCTGGTGAGCTAAGCTTTAAATAGATTGTGTTATCTTTAAGATATTATAATATTTTAAGGAATATGTAAAGTGATTTATCTGCTTTCCTTCCCCTCACCACAACTAGGAGCTTTATAAGATTTCTTGGTGAAAGGAAAACAGCTTCAGCTTCAAAATATGGATCCCAGGTATTGCATCCATTTAACTTTGTCGGTTAACAATTATTTTACAACTTAAGCTGGAAACAGAATGCATTGTCTACTGGCTGAATGCTTAGTAATTTTATACATCTTTTTAGTTAGGTCTGCAGATGGCCTGATCTAAATGGGTCGTTGCCTGTTCAGTTGTTCCACCCTGTCTGAATTCTCAGGTCCCAGTACTCCATACTGGGCTTGACGGGCTGCAAGTATATGGACTTAGCTTGACTTTGAATATTGGTTTCCCTGTCATTTTTAATAATATACATAAATTTGAAAATTTGAAAATAGAGTATCAAATGAAAACAATGATTTAGAAAAAAGTGTCTAGAAAAACAAACAAAAATAATAAATATTTGAAAAGAAAAAAAAGATTATTTAAATAAAGATCAATACAAAGGCTAGTGCCCTTTGCCAGTTGGTTTAACTTTCATGGCTATTTTCCACATCTTGTTTATCAACTAATAGACTTTGCCACTTGGTTTAACTAGCAAGCTGAATTTGTGAAACGCCTTTTTTTCTCAATCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGTGTTGACAATGAATCAGTTGAATCTTCAAGATTGCGCGGAATTGTCCACGAGAATTGCATAAAGTATGTAGTTATTGAATATATTTTCTGTAGCTTCTACTTGGTTGATTTTGTGAATTACTTTGATTTCCGGGAGGATGCCCCATATCCACTTAATTATTTGCTTATCCAGAGAGCCATTTGTAATCTGAGCGAATTAGCAAAAAGTGGGTATGGACATGGGGTGGCCTTCACATTGTTAAATGTGCATGACGTAATGATTTGTTTTTGAACTGTAGTTGTATTGTGCCTCTTAGAGAGCGAAGGGTTTCCACTATAAAGAGATTCAGCACTTCAGGTTTGTTAAAAGGAAGAGATATTGAACAAATCTTAGTCCTTCATTTTTATTTATGAACAAGATCTGTTGTGTGTCCTTAAGTTCTGAAGCCTTCATTTTCATGTCTCGAAAATGATCGAAACTTACGAGAAGGCTGGTTTTAATGGAAGCTATTTGCCCTGACCTTACAGGCTTGGATGGAAAAGTTGCTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGAACCTTGATTCAGTAACTTTCTCACTACCATGTAAAGAATCTTGCTCTCGGCAGAGTCAACATGCCTTGTATATCATAGCAGCTGTGAGGAACTGATTGCTTTTTCTTCTTGTAGCAGACAAGCGAGTTTGATTTTGTGTATGTATGCATTTTCAGCTAAAATTTTGCTCTTAGAGATTTCATACACATCATTGGAGTTCAATCCCTCTCATTTAGGTCTCAATTTATGTTCAGACTATTGGTTTTACATCTTCTATAATGTTCTGTCTCTCGAAATACTTCGTGTCGTTTCATATTCTGTGCCGTTTGTGTTTGATATGAAAATATCAAAATTAAACTCGGCATGAACACAGACTATACTGCAAAGAGTTGTAGTACTTGTTATTGTTCAAATTGTGGGTACCAAATGAAGAAAGACAAGATTATAACTTGTAAGTTGTA

mRNA sequence

TACGTTGGCGCACAGAGAATCTTTCTTAACATACACGGCTGCTGGTTTTCGCCATGGTCGCTTTCCTTTTTGGATCGCATTCGTATTTCTGAGATCTCCCTCGCGCGCGCCTGTATTTCTCAATCACTTCTAAGACTTTTATCTTAAAAGTCCCTACCAATCGCAAATCAAATTCACCGAGAAGCTGGAATTTCGAGCCGTCGTTGATTCCTGAGAATTTCCAATATTCTCTACTGGAGCTGGGAAAACAATGACAGCAATTGCAGTTCACGGGTTCGCTCAGTGCATCACTTGCCATGCTTGGAGTCCTGATCACTCTATGGTTGCATTTTGTCCCAACAACAATGAAGTTCACATTTATAAATCAGTACAAGACAACTGGGAGAGAATACATGTTCTTCAAAAGCACGATCAAATTATCTCTGGGATAGACTGGAGTGTGAAGTCAAACAGAATTGTGACTGCATCACATGATCGAAATTCATATGTTTGGAACCTTGAAGGATCAGAATGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAACTTCTCAGGAAAAGGCATGATTCTTCTGTGACAAATGTCGCTTGGCATCCCAATAATCTTCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATATTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAAAGCCGGCGCATTTTCAGATTCAAAATTCGGAGAGTTAATTGTTCAGCTCGATCTCTCATTCTCTTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAAAACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTTGTTGATGAAATTGGTCCTTCCCCTCTAGCCCAGAATGTTGCACTTCGAGATTTGCCTCTTCGTGATATACTATTTGTTAGTGAGAGAATGGTTATAGGTGTAGGATTCGATTGCAATCCTATGGTTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTATAAGATTTCTTGGTGAAAGGAAAACAGCTTCAGCTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGTGTTGACAATGAATCAGTTGAATCTTCAAGATTGCGCGGAATTGTCCACGAGAATTGCATAAATTGTATTGTGCCTCTTAGAGAGCGAAGGGTTTCCACTATAAAGAGATTCAGCACTTCAGGCTTGGATGGAAAAGTTGCTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGAACCTTGATTCAGTAACTTTCTCACTACCATGTAAAGAATCTTGCTCTCGGCAGAGTCAACATGCCTTGTATATCATAGCAGCTGTGAGGAACTGATTGCTTTTTCTTCTTGTAGCAGACAAGCGAGTTTGATTTTGTGTATGTATGCATTTTCAGCTAAAATTTTGCTCTTAGAGATTTCATACACATCATTGGAGTTCAATCCCTCTCATTTAGGTCTCAATTTATGTTCAGACTATTGGTTTTACATCTTCTATAATGTTCTGTCTCTCGAAATACTTCGTGTCGTTTCATATTCTGTGCCGTTTGTGTTTGATATGAAAATATCAAAATTAAACTCGGCATGAACACAGACTATACTGCAAAGAGTTGTAGTACTTGTTATTGTTCAAATTGTGGGTACCAAATGAAGAAAGACAAGATTATAACTTGTAAGTTGTA

Coding sequence (CDS)

ATGACAGCAATTGCAGTTCACGGGTTCGCTCAGTGCATCACTTGCCATGCTTGGAGTCCTGATCACTCTATGGTTGCATTTTGTCCCAACAACAATGAAGTTCACATTTATAAATCAGTACAAGACAACTGGGAGAGAATACATGTTCTTCAAAAGCACGATCAAATTATCTCTGGGATAGACTGGAGTGTGAAGTCAAACAGAATTGTGACTGCATCACATGATCGAAATTCATATGTTTGGAACCTTGAAGGATCAGAATGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAACTTCTCAGGAAAAGGCATGATTCTTCTGTGACAAATGTCGCTTGGCATCCCAATAATCTTCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATATTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAAAGCCGGCGCATTTTCAGATTCAAAATTCGGAGAGTTAATTGTTCAGCTCGATCTCTCATTCTCTTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAAAACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTTGTTGATGAAATTGGTCCTTCCCCTCTAGCCCAGAATGTTGCACTTCGAGATTTGCCTCTTCGTGATATACTATTTGTTAGTGAGAGAATGGTTATAGGTGTAGGATTCGATTGCAATCCTATGGTTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTATAAGATTTCTTGGTGAAAGGAAAACAGCTTCAGCTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGTGTTGACAATGAATCAGTTGAATCTTCAAGATTGCGCGGAATTGTCCACGAGAATTGCATAAATTGTATTGTGCCTCTTAGAGAGCGAAGGGTTTCCACTATAAAGAGATTCAGCACTTCAGGCTTGGATGGAAAAGTTGCTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGA

Protein sequence

MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLAQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDGKVAIWDLEGQADLSQYL

Homology

[Close]

BLAST of Cp4.1LG04g02460.1 vs. Swiss-Prot
Match: ARC1A_ARATH (Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana GN=ARPC1A PE=2 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 2.1e-173
Identity = 286/370 (77.30%), Postives = 326/370 (88.11%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFA+D+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+NCIN IV L +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGKVAIWDLE
Sbjct: 361 DGKVAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460.1 vs. Swiss-Prot
Match: ARC1B_ARATH (Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana GN=ARPC1B PE=2 SV=1)

HSP 1 Score: 605.9 bits (1561), Expect = 3.0e-172
Identity = 285/370 (77.03%), Postives = 325/370 (87.84%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFAAD+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+N I  IVPL +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASDSRGGVHDNSITSIVPLGKGGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGK+AIWDLE
Sbjct: 361 DGKIAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460.1 vs. Swiss-Prot
Match: ARPC1_DICDI (Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.7e-90
Identity = 162/369 (43.90%), Postives = 233/369 (63.14%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M+A  +   A CIT HAW+ D S VA CPNNNEVHIY     +W   HVL +HDQ+++ I
Sbjct: 1   MSAFEIEHLASCITAHAWNADRSRVALCPNNNEVHIYAKQGTSWVVEHVLAEHDQLVTSI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DW+ K+NRI+T+S DRN+YVW  +  +W P LV+LR+NRAA  V+WSP+ENKFAV +GAK
Sbjct: 61  DWAPKTNRILTSSQDRNAYVWTFKDGQWKPVLVLLRINRAATHVKWSPQENKFAVATGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
            VCIC++E+E++WW S  + K+H S+V  V WHPNNLLLAT+S+D K R+F  +IK  D 
Sbjct: 121 LVCICFFEEEHDWWASNHI-KKHKSTVLKVDWHPNNLLLATSSSDYKVRVFDAYIKKADG 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           + S    + +  FGE + + D   SW   +KWSPSG TLAY+ H+ +    +     P  
Sbjct: 181 R-SVTRPYGEVAFGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSTNPPTI 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           + + +R+LPLRD+L+++E  + GVG+DC P++   ++ G W   ++ GE   AS     +
Sbjct: 241 EKLRVRNLPLRDLLYITENSIAGVGYDCAPLLI-TNQNG-W---KYSGEMDKASEGGAAA 300

Query: 301 QFSEAFGKLYGQPRQGVD-NESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
               +  KL+   +  VD  ES  + +    VH+NCI  IVP +      +  FSTSGLD
Sbjct: 301 GSETSARKLF---QNKVDLGESKSADKKLTTVHQNCITSIVPFKSVG-GVVSDFSTSGLD 358

Query: 361 GKVAIWDLE 369
           G + +W ++
Sbjct: 361 GNIVVWHVK 358

[Close]

BLAST of Cp4.1LG04g02460.1 vs. Swiss-Prot
Match: ARC1B_MOUSE (Actin-related protein 2/3 complex subunit 1B OS=Mus musculus GN=Arpc1b PE=1 SV=4)

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-78
Identity = 149/367 (40.60%), Postives = 223/367 (60.76%), Query Frame = 1


Query: 4   IAVHGF-AQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDW 63
           +A H F  + I+CHAW+ D + +A CPNN+EVHIY+     W ++H L++H+  ++GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query: 64  SVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 123
           + +SNRIVT   DRN+YVW L+G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct: 61  APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query: 124 CICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKD 183
            ICY+EQEN+WWV K ++K   S+V ++ WHPNN+LLA  S D KCRIFS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 184 SKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLAQN 243
           +     S   FGEL+ +   S  W  GV +S SG  +A+  H+S +  VD      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVA-T 240

Query: 244 VALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKT-ASASKYGSQ 303
           +A   LPL  + F++E  ++  G DC P++F  D   +   + F G       +S+ G  
Sbjct: 241 LASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAV--TLSFGGRLDVPKQSSQRGMT 300

Query: 304 FSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDGK 363
             E F  L    +   +  +   + L  + H+N ++ I  L   + +   +F T+G+DG 
Sbjct: 301 ARERFQNL--DKKASSEGGAATGAGLDSL-HKNSVSQISVLSGGK-AKCSQFCTTGMDGG 360

Query: 364 VAIWDLE 369
           ++IWD++
Sbjct: 361 MSIWDVK 360

[Close]

BLAST of Cp4.1LG04g02460.1 vs. Swiss-Prot
Match: ARC1B_RAT (Actin-related protein 2/3 complex subunit 1B OS=Rattus norvegicus GN=Arpc1b PE=1 SV=3)

HSP 1 Score: 293.1 bits (749), Expect = 4.3e-78
Identity = 152/367 (41.42%), Postives = 222/367 (60.49%), Query Frame = 1


Query: 4   IAVHGF-AQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDW 63
           +A H F  + I+CHAW+ D + +A CPNN+EVHIY+     W ++H L++H+  ++GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query: 64  SVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 123
           + +SNRIVT   DRN+YVW L+G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct: 61  APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query: 124 CICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKD 183
            ICY+EQEN+WWV K ++K   S+V ++ WHPNN+LLA  S D KCRIFS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 184 SKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLAQN 243
           +     S   FGEL+ +   S  W  GV +S  G  +A+  H+S +  VD      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVA-T 240

Query: 244 VALRDLPLRDILFVSERMVIGVGFDCNPMVFAADE-RGIWSFIRFLGERKTASASKYGSQ 303
           +A   LPL  I F++E  ++  G DC P++F  D   G  SF   L   K    S+ G  
Sbjct: 241 LASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPK--QNSQRGLT 300

Query: 304 FSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDGK 363
             E F  L    +   +  +   + L  + H+N ++ I  L   + +   +F T+G+DG 
Sbjct: 301 ARERFQNL--DKKASSEGGAATGAGLDSL-HKNSVSQISVLSGGK-AKCSQFCTTGMDGG 360

Query: 364 VAIWDLE 369
           ++IWD++
Sbjct: 361 MSIWDVK 360

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TrEMBL
Match: A0A0A0KHX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G422800 PE=4 SV=1)

HSP 1 Score: 741.1 bits (1912), Expect = 6.6e-211
Identity = 351/379 (92.61%), Postives = 363/379 (95.78%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           MTAIAVH FA CITCHAWSPDHSMVAFCPNNNEVHIYKS+QDNWER+HVLQKHDQ+ISGI
Sbjct: 1   MTAIAVHQFAHCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDSKAG FSDSKFGELIVQLDLSFSWAFGVKWS SG TLAYAGHNSMIYFVDE+GPSPLA
Sbjct: 181 KDSKAGTFSDSKFGELIVQLDLSFSWAFGVKWSASGNTLAYAGHNSMIYFVDEVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           Q+VA RDLPLRDILFVSERMVIGVGFDC+PM FAADERGIWSF+RFLGE+KTAS SKYGS
Sbjct: 241 QSVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGEKKTASGSKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRE--RRVSTIKRFSTSGL 360
           QFSEAFGKLYGQPRQGV N+SVESSRLRG VHENCINCIVPL+E   R STIKRFSTSGL
Sbjct: 301 QFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSGL 360

Query: 361 DGKVAIWDLEGQADLSQYL 378
           DGKV IWDLEGQ DLSQYL
Sbjct: 361 DGKVVIWDLEGQDDLSQYL 379

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TrEMBL
Match: A0A067EU28_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016982mg PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 7.6e-191
Identity = 312/377 (82.76%), Postives = 339/377 (89.92%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH FAQCITCHAWSPDH+MVAFCPNNNEVHIYK +Q+ WE++HVLQKHDQI+SGI
Sbjct: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+ LATTSTDGKCR+FSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           K+ K G  SD+KFGE I+QLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASAS-KYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADE GIW+FI+FL ERKT+S+  KYG
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + GV N++VESSR RG  H NCINCIVPLRE   S I RF+TSGLD
Sbjct: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360

Query: 361 GKVAIWDLEGQADLSQY 377
           GK+  WDLE Q DL  Y
Sbjct: 361 GKIVTWDLESQEDLLNY 377

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TrEMBL
Match: V4U5S0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015615mg PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 7.6e-191
Identity = 312/377 (82.76%), Postives = 339/377 (89.92%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH FAQCITCHAWSPDH+MVAFCPNNNEVHIYK +Q+ WE++HVLQKHDQI+SGI
Sbjct: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+ LATTSTDGKCR+FSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           K+ K G  SD+KFGE I+QLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASAS-KYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADE GIW+FI+FL ERKT+S+  KYG
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + GV N++VESSR RG  H NCINCIVPLRE   S I RF+TSGLD
Sbjct: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360

Query: 361 GKVAIWDLEGQADLSQY 377
           GK+  WDLE Q DL  Y
Sbjct: 361 GKIVTWDLESQEDLLNY 377

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TrEMBL
Match: A0A061DJX7_THECC (Actin-related protein C1A isoform 1 OS=Theobroma cacao GN=TCM_001800 PE=4 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 2.2e-190
Identity = 311/378 (82.28%), Postives = 345/378 (91.27%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M A+AVH FAQCITCHAWSPD SMVAFCPNNNEVHIYK ++D WE++HVLQKHDQI++GI
Sbjct: 1   MAAVAVHQFAQCITCHAWSPDQSMVAFCPNNNEVHIYKLLEDKWEKVHVLQKHDQIVTGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVT SHDRNSYVWN EG+EWVPTLVILRLNRAALCVQWSP+ENKFAVGSGAK
Sbjct: 61  DWSGRSNRIVTVSHDRNSYVWNQEGAEWVPTLVILRLNRAALCVQWSPRENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RK+HDSSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKKHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           ++SK  + SDSKFGE IVQLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 RESKTSSSSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERK-TASASKYG 300
           QNVA R+LPLRD+LFVSE+MVIGVGFDCNPMVFAAD+ GIWSFIRFLGERK ++S+SKYG
Sbjct: 241 QNVAFRNLPLRDVLFVSEKMVIGVGFDCNPMVFAADDSGIWSFIRFLGERKASSSSSKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + G+ N++VE SR  G+VHENCINCIVPLR+    T KRFSTSGLD
Sbjct: 301 SQFSEAFGKLYGQSKHGLSNDTVEPSRAHGVVHENCINCIVPLRKEGPRT-KRFSTSGLD 360

Query: 361 GKVAIWDLEGQADLSQYL 378
           GKV IWDLE Q  +S YL
Sbjct: 361 GKVVIWDLENQEVVSDYL 377

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TrEMBL
Match: B9IA44_POPTR (Putative ARP2/3 protein complex subunit p41 OS=Populus trichocarpa GN=POPTR_0014s13810g PE=4 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 8.4e-190
Identity = 311/378 (82.28%), Postives = 337/378 (89.15%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M A+ VH FAQCITCHAWS D SM+AFCPNNNEVHIY+  QD WE++HVLQKHDQI+ GI
Sbjct: 1   MAAVEVHQFAQCITCHAWSADRSMIAFCPNNNEVHIYRLSQDKWEKVHVLQKHDQIVCGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVTASHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTASHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQ+NNWWVSKL+RKRHDSSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVDT
Sbjct: 121 TVCICYYEQDNNWWVSKLIRKRHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           +DSKAG+ SDSKFGE IVQLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 RDSKAGSVSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERK-TASASKYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADERGIWSFIRFLGERK T S S+Y 
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADERGIWSFIRFLGERKSTLSGSRYS 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGK YGQ + G  N+ +E SR RG +HENCI+CI+ L E   S   RFSTSGLD
Sbjct: 301 SQFSEAFGKFYGQSKYGASNDGIEPSRSRGGIHENCISCIMSLTESGSSRKTRFSTSGLD 360

Query: 361 GKVAIWDLEGQADLSQYL 378
           GKV +WDLE Q DLS YL
Sbjct: 361 GKVVVWDLENQEDLSGYL 378

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TAIR10
Match: AT2G30910.1 (AT2G30910.1 actin-related protein C1A)

HSP 1 Score: 609.8 bits (1571), Expect = 1.2e-174
Identity = 286/370 (77.30%), Postives = 326/370 (88.11%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFA+D+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+NCIN IV L +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGKVAIWDLE
Sbjct: 361 DGKVAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TAIR10
Match: AT2G31300.1 (AT2G31300.1 actin-related protein C1B)

HSP 1 Score: 605.9 bits (1561), Expect = 1.7e-173
Identity = 285/370 (77.03%), Postives = 325/370 (87.84%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFAAD+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+N I  IVPL +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASDSRGGVHDNSITSIVPLGKGGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGK+AIWDLE
Sbjct: 361 DGKIAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TAIR10
Match: AT5G67320.1 (AT5G67320.1 WD-40 repeat family protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-07
Identity = 42/167 (25.15%), Postives = 68/167 (40.72%), Query Frame = 1


Query: 13  ITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDWSVKSNRIVTA 72
           +T   W+ + +++A    + +  I+     N E I  L KH   I  + W+ K + ++T 
Sbjct: 327 VTTLDWNGEGTLLATGSCDGQARIWTL---NGELISTLSKHKGPIFSLKWNKKGDYLLTG 386

Query: 73  SHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN 132
           S DR + VW+++  EW         +   L V W      FA  S    + +C   +   
Sbjct: 387 SVDRTAVVWDVKAEEWKQQFEF--HSGPTLDVDWR-NNVSFATSSTDSMIYLCKIGETR- 446

Query: 133 WWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIF----STFI 176
                     H   V  V W P   LLA+ S D   +I+    STF+
Sbjct: 447 ---PAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFV 483

[Close]

BLAST of Cp4.1LG04g02460.1 vs. TAIR10
Match: AT3G49660.1 (AT3G49660.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-07
Identity = 39/133 (29.32%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 45  ERIHVLQKHDQIISGIDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCV 104
           E +     H+  IS + +S  +  IV+AS D+   +W++E    + TL+       A CV
Sbjct: 62  EPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLI--GHTNYAFCV 121

Query: 105 QWSPKENKFAVGSGAKTVCICYYEQENNWWVS--KLLR--KRHDSSVTNVAWHPNNLLLA 164
            ++P+ N    GS  +TV I        W V+  K L+    H   VT V ++ +  L+ 
Sbjct: 122 NFNPQSNMIVSGSFDETVRI--------WDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIV 181

Query: 165 TTSTDGKCRIFST 174
           ++S DG CRI+ +
Sbjct: 182 SSSYDGLCRIWDS 184

[Close]

BLAST of Cp4.1LG04g02460.1 vs. NCBI nr
Match: gi|659097216|ref|XP_008449504.1| (PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis melo])

HSP 1 Score: 753.1 bits (1943), Expect = 2.4e-214
Identity = 354/377 (93.90%), Postives = 365/377 (96.82%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           MTAIAVH FAQCITCHAWSPDHSMVAFCPNNNEVHIYKS+QDNWER+HVLQKHDQ+ISGI
Sbjct: 1   MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDS+AG FSDSKFGELIVQLDLSFSWAFGVKWSPSG TLAYAGHNSMIYFVDE+GPSPLA
Sbjct: 181 KDSRAGTFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           QNVA RDLPLRDILFVSERMVIGVGFDC+PM FAADERGIWSF+RFLGERKTAS SKYGS
Sbjct: 241 QNVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGERKTASGSKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDG 360
           QFSEAFGKLYGQPRQGV N+SVESSRLRG VHENCINCIVPL+E  VSTIKRFSTSGLDG
Sbjct: 301 QFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGVSTIKRFSTSGLDG 360

Query: 361 KVAIWDLEGQADLSQYL 378
           KV IWDLEGQ DLSQYL
Sbjct: 361 KVVIWDLEGQDDLSQYL 377

[Close]

BLAST of Cp4.1LG04g02460.1 vs. NCBI nr
Match: gi|449444749|ref|XP_004140136.1| (PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis sativus])

HSP 1 Score: 741.1 bits (1912), Expect = 9.5e-211
Identity = 351/379 (92.61%), Postives = 363/379 (95.78%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           MTAIAVH FA CITCHAWSPDHSMVAFCPNNNEVHIYKS+QDNWER+HVLQKHDQ+ISGI
Sbjct: 1   MTAIAVHQFAHCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDSKAG FSDSKFGELIVQLDLSFSWAFGVKWS SG TLAYAGHNSMIYFVDE+GPSPLA
Sbjct: 181 KDSKAGTFSDSKFGELIVQLDLSFSWAFGVKWSASGNTLAYAGHNSMIYFVDEVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           Q+VA RDLPLRDILFVSERMVIGVGFDC+PM FAADERGIWSF+RFLGE+KTAS SKYGS
Sbjct: 241 QSVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGEKKTASGSKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRE--RRVSTIKRFSTSGL 360
           QFSEAFGKLYGQPRQGV N+SVESSRLRG VHENCINCIVPL+E   R STIKRFSTSGL
Sbjct: 301 QFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSGL 360

Query: 361 DGKVAIWDLEGQADLSQYL 378
           DGKV IWDLEGQ DLSQYL
Sbjct: 361 DGKVVIWDLEGQDDLSQYL 379

[Close]

BLAST of Cp4.1LG04g02460.1 vs. NCBI nr
Match: gi|1009126797|ref|XP_015880348.1| (PREDICTED: actin-related protein 2/3 complex subunit 1B-like [Ziziphus jujuba])

HSP 1 Score: 675.6 bits (1742), Expect = 4.9e-191
Identity = 310/377 (82.23%), Postives = 338/377 (89.66%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH  AQ ITCHAWSPDHSMVA CPNNNEVHIY+ +QD WE++HVLQKHDQI+SG+
Sbjct: 1   MAAIAVHQLAQSITCHAWSPDHSMVAVCPNNNEVHIYRLLQDKWEKMHVLQKHDQIVSGV 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVC+CYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+LLAT STDGKCR+FSTFIKGVD 
Sbjct: 121 TVCVCYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNILLATASTDGKCRVFSTFIKGVDP 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDS+ G  SDSKFGE IVQLDLSFSW+FGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KDSRTGPSSDSKFGEQIVQLDLSFSWSFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           QNVA RDLPLRD++FVSER+VIGVGFDCNPMVF ADERGIWSF+RFL  ++T+S  KYGS
Sbjct: 241 QNVAFRDLPLRDVIFVSERLVIGVGFDCNPMVFGADERGIWSFLRFLERKRTSSGPKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDG 360
           QFSEAFGKLYGQ + GV N+ +E SR RG VHEN INC+VPLRE   ST  RFSTSG+DG
Sbjct: 301 QFSEAFGKLYGQSKHGVGNDGIEPSRSRGGVHENFINCVVPLRESGKSTATRFSTSGMDG 360

Query: 361 KVAIWDLEGQADLSQYL 378
           KV IWDLE Q DLS YL
Sbjct: 361 KVVIWDLENQTDLSDYL 377

[Close]

BLAST of Cp4.1LG04g02460.1 vs. NCBI nr
Match: gi|567911407|ref|XP_006448017.1| (hypothetical protein CICLE_v10015615mg [Citrus clementina])

HSP 1 Score: 674.5 bits (1739), Expect = 1.1e-190
Identity = 312/377 (82.76%), Postives = 339/377 (89.92%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH FAQCITCHAWSPDH+MVAFCPNNNEVHIYK +Q+ WE++HVLQKHDQI+SGI
Sbjct: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+ LATTSTDGKCR+FSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           K+ K G  SD+KFGE I+QLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASAS-KYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADE GIW+FI+FL ERKT+S+  KYG
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + GV N++VESSR RG  H NCINCIVPLRE   S I RF+TSGLD
Sbjct: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360

Query: 361 GKVAIWDLEGQADLSQY 377
           GK+  WDLE Q DL  Y
Sbjct: 361 GKIVTWDLESQEDLLNY 377

[Close]

BLAST of Cp4.1LG04g02460.1 vs. NCBI nr
Match: gi|590710275|ref|XP_007048783.1| (Actin-related protein C1A isoform 1 [Theobroma cacao])

HSP 1 Score: 672.9 bits (1735), Expect = 3.2e-190
Identity = 311/378 (82.28%), Postives = 345/378 (91.27%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M A+AVH FAQCITCHAWSPD SMVAFCPNNNEVHIYK ++D WE++HVLQKHDQI++GI
Sbjct: 1   MAAVAVHQFAQCITCHAWSPDQSMVAFCPNNNEVHIYKLLEDKWEKVHVLQKHDQIVTGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVT SHDRNSYVWN EG+EWVPTLVILRLNRAALCVQWSP+ENKFAVGSGAK
Sbjct: 61  DWSGRSNRIVTVSHDRNSYVWNQEGAEWVPTLVILRLNRAALCVQWSPRENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RK+HDSSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKKHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           ++SK  + SDSKFGE IVQLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 RESKTSSSSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERK-TASASKYG 300
           QNVA R+LPLRD+LFVSE+MVIGVGFDCNPMVFAAD+ GIWSFIRFLGERK ++S+SKYG
Sbjct: 241 QNVAFRNLPLRDVLFVSEKMVIGVGFDCNPMVFAADDSGIWSFIRFLGERKASSSSSKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + G+ N++VE SR  G+VHENCINCIVPLR+    T KRFSTSGLD
Sbjct: 301 SQFSEAFGKLYGQSKHGLSNDTVEPSRAHGVVHENCINCIVPLRKEGPRT-KRFSTSGLD 360

Query: 361 GKVAIWDLEGQADLSQYL 378
           GKV IWDLE Q  +S YL
Sbjct: 361 GKVVIWDLENQEVVSDYL 377

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g02460.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARC1A_ARATH	2.1e-173	77.30	Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana GN=ARPC1A P...	[more]
ARC1B_ARATH	3.0e-172	77.03	Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana GN=ARPC1B P...	[more]
ARPC1_DICDI	1.7e-90	43.90	Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA ...	[more]
ARC1B_MOUSE	1.1e-78	40.60	Actin-related protein 2/3 complex subunit 1B OS=Mus musculus GN=Arpc1b PE=1 SV=4	[more]
ARC1B_RAT	4.3e-78	41.42	Actin-related protein 2/3 complex subunit 1B OS=Rattus norvegicus GN=Arpc1b PE=1...	[more]

BLAST of Cp4.1LG04g02460.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHX9_CUCSA	6.6e-211	92.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G422800 PE=4 SV=1	[more]
A0A067EU28_CITSI	7.6e-191	82.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016982mg PE=4 SV=1	[more]
V4U5S0_9ROSI	7.6e-191	82.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015615mg PE=4 SV=1	[more]
A0A061DJX7_THECC	2.2e-190	82.28	Actin-related protein C1A isoform 1 OS=Theobroma cacao GN=TCM_001800 PE=4 SV=1	[more]
B9IA44_POPTR	8.4e-190	82.28	Putative ARP2/3 protein complex subunit p41 OS=Populus trichocarpa GN=POPTR_0014...	[more]

BLAST of Cp4.1LG04g02460.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30910.1	1.2e-174	77.30	actin-related protein C1A	[more]
AT2G31300.1	1.7e-173	77.03	actin-related protein C1B	[more]
AT5G67320.1	1.9e-07	25.15	WD-40 repeat family protein	[more]
AT3G49660.1	1.9e-07	29.32	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Cp4.1LG04g02460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097216\|ref\|XP_008449504.1\|	2.4e-214	93.90	PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis melo]	[more]
gi\|449444749\|ref\|XP_004140136.1\|	9.5e-211	92.61	PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis sativus]	[more]
gi\|1009126797\|ref\|XP_015880348.1\|	4.9e-191	82.23	PREDICTED: actin-related protein 2/3 complex subunit 1B-like [Ziziphus jujuba]	[more]
gi\|567911407\|ref\|XP_006448017.1\|	1.1e-190	82.76	hypothetical protein CICLE_v10015615mg [Citrus clementina]	[more]
gi\|590710275\|ref\|XP_007048783.1\|	3.2e-190	82.28	Actin-related protein C1A isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0034314	Arp2/3 complex-mediated actin nucleation
GO:0030833	regulation of actin filament polymerization

Vocabulary: **Cellular Component**
Term	Definition
GO:0015629	actin cytoskeleton
GO:0005885	Arp2/3 protein complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024977	Apc4_WD40_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR017383	ARPC1
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005885	Arp2/3 protein complex
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g02460	Cp4.1LG04g02460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02460.1	Cp4.1LG04g02460.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02460.1:five_prime_utr:001	Cp4.1LG04g02460.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02460.1:cds:015	Cp4.1LG04g02460.1:cds:015	CDS
Cp4.1LG04g02460.1:cds:014	Cp4.1LG04g02460.1:cds:014	CDS
Cp4.1LG04g02460.1:cds:013	Cp4.1LG04g02460.1:cds:013	CDS
Cp4.1LG04g02460.1:cds:012	Cp4.1LG04g02460.1:cds:012	CDS
Cp4.1LG04g02460.1:cds:011	Cp4.1LG04g02460.1:cds:011	CDS
Cp4.1LG04g02460.1:cds:010	Cp4.1LG04g02460.1:cds:010	CDS
Cp4.1LG04g02460.1:cds:009	Cp4.1LG04g02460.1:cds:009	CDS
Cp4.1LG04g02460.1:cds:008	Cp4.1LG04g02460.1:cds:008	CDS
Cp4.1LG04g02460.1:cds:007	Cp4.1LG04g02460.1:cds:007	CDS
Cp4.1LG04g02460.1:cds:006	Cp4.1LG04g02460.1:cds:006	CDS
Cp4.1LG04g02460.1:cds:005	Cp4.1LG04g02460.1:cds:005	CDS
Cp4.1LG04g02460.1:cds:004	Cp4.1LG04g02460.1:cds:004	CDS
Cp4.1LG04g02460.1:cds:003	Cp4.1LG04g02460.1:cds:003	CDS
Cp4.1LG04g02460.1:cds:002	Cp4.1LG04g02460.1:cds:002	CDS
Cp4.1LG04g02460.1:cds:001	Cp4.1LG04g02460.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g02460.1:three_prime_utr:001	Cp4.1LG04g02460.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 45..82 score: 0
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 87..126 score: 7.9coord: 2..38 score: 410.0coord: 320..366 score: 190.0coord: 43..82 score: 1.1E-4coord: 193..232 score: 5.2coord: 132..172 score: 1.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 50..91 score: 11.478coord: 140..172 score:
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 8..243 score: 3.0E-49coord: 331..370 score: 3.0
IPR017383	Actin-related protein 2/3 complex subunit 1	PIR	PIRSF038093	ARPC1	coord: 1..371 score: 7.6E
IPR017383	Actin-related protein 2/3 complex subunit 1	PANTHER	PTHR10709	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1	coord: 1..368 score: 9.3E
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 6..181 score: 13
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 318..373 score: 1.01E-48coord: 11..286 score: 1.01
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 69..83 scor
IPR024977	Anaphase-promoting complex subunit 4, WD40 domain	PFAM	PF12894	ANAPC4_WD40	coord: 104..172 score: 8.
None	No IPR available	PANTHER	PTHR10709:SF2	ACTIN RELATED COMPLEX P41 SUBUNIT	coord: 1..368 score: 9.3E