Cp4.1LG04g02460 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g02460
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Actin-related protein 2/3 complex subunit 1A
Location	Cp4.1LG04 : 7777771 .. 7783159 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGTTGGCGCACAGAGAATCTTTCTTAACATACACGGCTGCTGGTTTTCGCCATGGTCGCTTTCCTTTTTGGATCGCATTCGTATTTCTGAGATCTCCCTCGCGCGCGCCTGTATTTCTCAATCACTTCTAAGACTTTTATCTTAAAAGTCCCTACCAATCGCAAATCAAATTCACCGAGAAGCTGGAATTTCGAGCCGTCGTTGATTCCTGAGAATTTCCAATATTCTCTACTGGAGCTGGGAAAACAATGACAGCAATTGCAGTTCACGGGTTCGCTCAGTGCATCACTTGCCATGCTTGGAGTCCTGATCACTCTAGTAATTAACCTTTCTCTTTTTGCTCGCTTTCTTTATTTAATCGTTCTGTTTTCTGAGGGTGAAATGGAATGGAAATGTCGAGTTTCTGTAATTTGTTTGTCCTCAGTTCAGGAAAAAGTTGAACCAAAATACTTAGACGTGGATTTTATATATTGAGATCGCGTATCTATGTTTCCTGAGCTATCAAAGAGAGGGCAATGATATCAATTCAGCTGAGCGATCTAGATTTAGTTTGCTTTATTGATGAATGATGGGAAGAACGCCAGGATAGGTTACTTGGGCTCAACCTCCACCCTGTTGAAAATACGATAACCCATACGTCTTATGGGGTAGGATACATGCTAATTATGCTGTTGACTAGCTTCACGAGATCTGTTTACTGATCTGATCATTCTGGGAATAACCAATATGTCTTATGGGGTAGGATACATGCTAAAATTCATGGAGAAATGGGCTGTTATCGAATCGGCTGCTAAGTTTTTCAGGTCACCCGGGGGACATTCGTTTGTTACTTTGTTACTTCAATGCTCTCCATTGTCTAATAATCAAAAGGACGATTTTATTCAATTGTTGTTTAGATTCATCATCTGACTGTGCTTATGCTAATGTTCTTGATATGTTTTATAGTGGTTGCATTTTGTCCCAACAACAATGAAGTTCACATTTATAAATCAGTACAAGACAACTGGGAGAGAATACATGTTCTTCAAAAGGTATCTTTTAACTTTACTGTTTCCATTTATAATTTATGAGAAAATATGAAACCTAAGGTCACTGCATTTATCTATTCATGATCGATGTTTTTTGTTTTCATTCCAATCTTTTGAGTTAGGTTAAGTGAAATCTTTCTAATGAAGGCATGTTGTTAATGTCTATTAATTTATCTACTTTGTCTGTGTCAGCACGATCAAATTATCTCTGGGATAGACTGGAGTGTGAAGTCAAACAGAATTGTGACTGCATCACATGATCGAAATTCGTAAGTGTTATCTCATATTCTTGTTTTTTTTGGTCCAGTTATTTGTACGTTCACTGGTTTCTTATCTTTTCACTTTTTTTCACTCCAGTTATCACCCCTTCCTTCCCCCAGCCTCTTCTGGCCTCTCTCAGATAATATTTTGGGAATTTTATTTATTTATATGTTCCACATTGGCCTACCAATCTCTTTTCTTTCTAGATATGTTTGGAACCTTGAAGGATCAGAATGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGGTAGTGCAAAATGTCCTACCCTGCTCTTGCTCATCACTTATGTTATCCACATCATCCTTAAATTTCTACGTTTTGCATTATCCATCTTACCCCTAGAAAACAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAACAAGAGAACAATTGGTATGGCTCTTTCTCACTTTTTGTTCAAGTCATCGTGTCTATTGCCTTTATTTTACACGAAGATGGAAACTCTGCTAGATGATGAATTTATTGCTAATATTTCTTATCTGTAATCTTTTTGTTTCTTTGGCTTTGTAATCAATGCTTTAGTTTATTTTTGAATCATAATTAATTCTTATCAGAAATGAAACAACTCTTTATCATTGCTTCACCTAGTATGCTTACGCATTAGTTTTCCATATTTAACATGATCATGGTTTACCTTCCACAGGTGGGTCAGTAAACTTCTCAGGAAAAGGCATGATTCTTCTGTGACAAATGTCGCTTGGCATCCCAATAATGTTTGTTTTACCCTTCTTTCCACCGTTTCATATGAATTTATATGGACAAATTTTTTGATCTTTTTAGAAGATTTCCAGTTATATCTTAGTGCTTGCTTGTCACTTTGTTTTTCTGAGCAAAATTATGGCTGTGTTTTTCGGTTATGAATTTTCCCTTATATTTTATTCACAGCTTCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATATTTTCCACCTTCATTAAAGGTGTTGACACAAAGTATGTAGAGAGTAGTTTAGACTGCAGTCTTCTCATGAAATATTATAGGATTGATTTAGAAGTTACTGATGCTTGATTGAAATTTCACAGGGATTCAAAAGCCGGCGCATTTTCAGATTCAAAATTCGGAGAGGTTTAATATTCAGACTTTTAATTTGCAGTGAACAAAATTTCTTGTGCTTGGAAGAGTAGAATGCTTAAATTTTTTTTTATAAAATAACTAAAAGTGTTTTTGGATTGTCATCTTTTGATTCAAATTTAAATGATTTGAATTTCTCCCTTTGGAAAAGACATGGTTCAGTATTTTTGTCCACAGTTGCTCTCTACTTTGACGAGCAAAGTAGTTCCTATTATTTATGAGCAATTTCTTTTGGTGAATTAGTTAATTGTTCAGCTCGATCTCTCATTCTCTTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAAAACCTTAGCTTATGCAGGTTAGAAGTACCTCCTCTCTGCAAATTATTTACAGAGACAACTTTATAAGTTACAACTACAGCATATGGAATAGCAACAAGTTTGAATTTACAGAGACAAGTTTGAATTGTCTAATACATTTGCTTCTTATAGTCATACTGCCTTCCTTATAAATTGGGTAAGTTTTTTTCCATAAACATCATGGATAATACATCCATTTTGTAAATTTCAATCATCAATGAAATCGTCTCTTGTAAAAAAAAAAAAAAAAAATTCATTGGTTAGCTTCCTATAACTTGTACATAACAATTGTAACTATGAAATTTCCCCCATTATTTTAGTTACCTTTTGTTTGGGGCGTTGAAAACAATTTATAGGATTCAACTAGAGTCTCATTTTTTATGCTCTTGTTTAGATGGTGGTTTATTTGTACGCTACTGAAGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAATTTAAATGCTGAAGGTCACAATTCGATGATTTACTTTGTTGATGAAATTGGTCCTTCCCCTCTAGCCCAGAATGTTGCACTTCGAGATTTGCCTCTTCGTGATGTGGGTCAGCATCCATTTTTCTTTACTCTTTGAGTATTTCTTATAATTATTTAAATACAATGTACTATTTCGCTTTCTAATCTTGAAGGTTTTTTGGATCAATATAACACTCTTTCAGATACTATTTGTTAGTGAGAGAATGGTTATAGGTGTAGGATTCGATTGCAATCCTATGGTTTTTGCTGCTGATGAAAGAGGGATCTGGTGAGCTAAGCTTTAAATAGATTGTGTTATCTTTAAGATATTATAATATTTTAAGGAATATGTAAAGTGATTTATCTGCTTTCCTTCCCCTCACCACAACTAGGAGCTTTATAAGATTTCTTGGTGAAAGGAAAACAGCTTCAGCTTCAAAATATGGATCCCAGGTATTGCATCCATTTAACTTTGTCGGTTAACAATTATTTTACAACTTAAGCTGGAAACAGAATGCATTGTCTACTGGCTGAATGCTTAGTAATTTTATACATCTTTTTAGTTAGGTCTGCAGATGGCCTGATCTAAATGGGTCGTTGCCTGTTCAGTTGTTCCACCCTGTCTGAATTCTCAGGTCCCAGTACTCCATACTGGGCTTGACGGGCTGCAAGTATATGGACTTAGCTTGACTTTGAATATTGGTTTCCCTGTCATTTTTAATAATATACATAAATTTGAAAATTTGAAAATAGAGTATCAAATGAAAACAATGATTTAGAAAAAAGTGTCTAGAAAAACAAACAAAAATAATAAATATTTGAAAAGAAAAAAAAGATTATTTAAATAAAGATCAATACAAAGGCTAGTGCCCTTTGCCAGTTGGTTTAACTTTCATGGCTATTTTCCACATCTTGTTTATCAACTAATAGACTTTGCCACTTGGTTTAACTAGCAAGCTGAATTTGTGAAACGCCTTTTTTTCTCAATCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGTGTTGACAATGAATCAGTTGAATCTTCAAGATTGCGCGGAATTGTCCACGAGAATTGCATAAAGTATGTAGTTATTGAATATATTTTCTGTAGCTTCTACTTGGTTGATTTTGTGAATTACTTTGATTTCCGGGAGGATGCCCCATATCCACTTAATTATTTGCTTATCCAGAGAGCCATTTGTAATCTGAGCGAATTAGCAAAAAGTGGGTATGGACATGGGGTGGCCTTCACATTGTTAAATGTGCATGACGTAATGATTTGTTTTTGAACTGTAGTTGTATTGTGCCTCTTAGAGAGCGAAGGGTTTCCACTATAAAGAGATTCAGCACTTCAGGTTTGTTAAAAGGAAGAGATATTGAACAAATCTTAGTCCTTCATTTTTATTTATGAACAAGATCTGTTGTGTGTCCTTAAGTTCTGAAGCCTTCATTTTCATGTCTCGAAAATGATCGAAACTTACGAGAAGGCTGGTTTTAATGGAAGCTATTTGCCCTGACCTTACAGGCTTGGATGGAAAAGTTGCTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGAACCTTGATTCAGTAACTTTCTCACTACCATGTAAAGAATCTTGCTCTCGGCAGAGTCAACATGCCTTGTATATCATAGCAGCTGTGAGGAACTGATTGCTTTTTCTTCTTGTAGCAGACAAGCGAGTTTGATTTTGTGTATGTATGCATTTTCAGCTAAAATTTTGCTCTTAGAGATTTCATACACATCATTGGAGTTCAATCCCTCTCATTTAGGTCTCAATTTATGTTCAGACTATTGGTTTTACATCTTCTATAATGTTCTGTCTCTCGAAATACTTCGTGTCGTTTCATATTCTGTGCCGTTTGTGTTTGATATGAAAATATCAAAATTAAACTCGGCATGAACACAGACTATACTGCAAAGAGTTGTAGTACTTGTTATTGTTCAAATTGTGGGTACCAAATGAAGAAAGACAAGATTATAACTTGTAAGTTGTA

mRNA sequence

TACGTTGGCGCACAGAGAATCTTTCTTAACATACACGGCTGCTGGTTTTCGCCATGGTCGCTTTCCTTTTTGGATCGCATTCGTATTTCTGAGATCTCCCTCGCGCGCGCCTGTATTTCTCAATCACTTCTAAGACTTTTATCTTAAAAGTCCCTACCAATCGCAAATCAAATTCACCGAGAAGCTGGAATTTCGAGCCGTCGTTGATTCCTGAGAATTTCCAATATTCTCTACTGGAGCTGGGAAAACAATGACAGCAATTGCAGTTCACGGGTTCGCTCAGTGCATCACTTGCCATGCTTGGAGTCCTGATCACTCTATGGTTGCATTTTGTCCCAACAACAATGAAGTTCACATTTATAAATCAGTACAAGACAACTGGGAGAGAATACATGTTCTTCAAAAGCACGATCAAATTATCTCTGGGATAGACTGGAGTGTGAAGTCAAACAGAATTGTGACTGCATCACATGATCGAAATTCATATGTTTGGAACCTTGAAGGATCAGAATGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAACTTCTCAGGAAAAGGCATGATTCTTCTGTGACAAATGTCGCTTGGCATCCCAATAATCTTCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATATTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAAAGCCGGCGCATTTTCAGATTCAAAATTCGGAGAGTTAATTGTTCAGCTCGATCTCTCATTCTCTTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAAAACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTTGTTGATGAAATTGGTCCTTCCCCTCTAGCCCAGAATGTTGCACTTCGAGATTTGCCTCTTCGTGATATACTATTTGTTAGTGAGAGAATGGTTATAGGTGTAGGATTCGATTGCAATCCTATGGTTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTATAAGATTTCTTGGTGAAAGGAAAACAGCTTCAGCTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGTGTTGACAATGAATCAGTTGAATCTTCAAGATTGCGCGGAATTGTCCACGAGAATTGCATAAATTGTATTGTGCCTCTTAGAGAGCGAAGGGTTTCCACTATAAAGAGATTCAGCACTTCAGGCTTGGATGGAAAAGTTGCTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGAACCTTGATTCAGTAACTTTCTCACTACCATGTAAAGAATCTTGCTCTCGGCAGAGTCAACATGCCTTGTATATCATAGCAGCTGTGAGGAACTGATTGCTTTTTCTTCTTGTAGCAGACAAGCGAGTTTGATTTTGTGTATGTATGCATTTTCAGCTAAAATTTTGCTCTTAGAGATTTCATACACATCATTGGAGTTCAATCCCTCTCATTTAGGTCTCAATTTATGTTCAGACTATTGGTTTTACATCTTCTATAATGTTCTGTCTCTCGAAATACTTCGTGTCGTTTCATATTCTGTGCCGTTTGTGTTTGATATGAAAATATCAAAATTAAACTCGGCATGAACACAGACTATACTGCAAAGAGTTGTAGTACTTGTTATTGTTCAAATTGTGGGTACCAAATGAAGAAAGACAAGATTATAACTTGTAAGTTGTA

Coding sequence (CDS)

ATGACAGCAATTGCAGTTCACGGGTTCGCTCAGTGCATCACTTGCCATGCTTGGAGTCCTGATCACTCTATGGTTGCATTTTGTCCCAACAACAATGAAGTTCACATTTATAAATCAGTACAAGACAACTGGGAGAGAATACATGTTCTTCAAAAGCACGATCAAATTATCTCTGGGATAGACTGGAGTGTGAAGTCAAACAGAATTGTGACTGCATCACATGATCGAAATTCATATGTTTGGAACCTTGAAGGATCAGAATGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAACTTCTCAGGAAAAGGCATGATTCTTCTGTGACAAATGTCGCTTGGCATCCCAATAATCTTCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATATTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAAAGCCGGCGCATTTTCAGATTCAAAATTCGGAGAGTTAATTGTTCAGCTCGATCTCTCATTCTCTTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAAAACCTTAGCTTATGCAGGTCACAATTCGATGATTTACTTTGTTGATGAAATTGGTCCTTCCCCTCTAGCCCAGAATGTTGCACTTCGAGATTTGCCTCTTCGTGATATACTATTTGTTAGTGAGAGAATGGTTATAGGTGTAGGATTCGATTGCAATCCTATGGTTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTATAAGATTTCTTGGTGAAAGGAAAACAGCTTCAGCTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCGAGGCAAGGTGTTGACAATGAATCAGTTGAATCTTCAAGATTGCGCGGAATTGTCCACGAGAATTGCATAAATTGTATTGTGCCTCTTAGAGAGCGAAGGGTTTCCACTATAAAGAGATTCAGCACTTCAGGCTTGGATGGAAAAGTTGCTATTTGGGACTTGGAGGGCCAGGCTGATCTATCTCAATACTTGTGA

Protein sequence

MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLAQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDGKVAIWDLEGQADLSQYL

Homology

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BLAST of Cp4.1LG04g02460 vs. Swiss-Prot
Match: ARC1A_ARATH (Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana GN=ARPC1A PE=2 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 2.1e-173
Identity = 286/370 (77.30%), Postives = 326/370 (88.11%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFA+D+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+NCIN IV L +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGKVAIWDLE
Sbjct: 361 DGKVAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460 vs. Swiss-Prot
Match: ARC1B_ARATH (Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana GN=ARPC1B PE=2 SV=1)

HSP 1 Score: 605.9 bits (1561), Expect = 3.0e-172
Identity = 285/370 (77.03%), Postives = 325/370 (87.84%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFAAD+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+N I  IVPL +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASDSRGGVHDNSITSIVPLGKGGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGK+AIWDLE
Sbjct: 361 DGKIAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460 vs. Swiss-Prot
Match: ARPC1_DICDI (Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.7e-90
Identity = 162/369 (43.90%), Postives = 233/369 (63.14%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M+A  +   A CIT HAW+ D S VA CPNNNEVHIY     +W   HVL +HDQ+++ I
Sbjct: 1   MSAFEIEHLASCITAHAWNADRSRVALCPNNNEVHIYAKQGTSWVVEHVLAEHDQLVTSI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DW+ K+NRI+T+S DRN+YVW  +  +W P LV+LR+NRAA  V+WSP+ENKFAV +GAK
Sbjct: 61  DWAPKTNRILTSSQDRNAYVWTFKDGQWKPVLVLLRINRAATHVKWSPQENKFAVATGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
            VCIC++E+E++WW S  + K+H S+V  V WHPNNLLLAT+S+D K R+F  +IK  D 
Sbjct: 121 LVCICFFEEEHDWWASNHI-KKHKSTVLKVDWHPNNLLLATSSSDYKVRVFDAYIKKADG 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           + S    + +  FGE + + D   SW   +KWSPSG TLAY+ H+ +    +     P  
Sbjct: 181 R-SVTRPYGEVAFGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSTNPPTI 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           + + +R+LPLRD+L+++E  + GVG+DC P++   ++ G W   ++ GE   AS     +
Sbjct: 241 EKLRVRNLPLRDLLYITENSIAGVGYDCAPLLI-TNQNG-W---KYSGEMDKASEGGAAA 300

Query: 301 QFSEAFGKLYGQPRQGVD-NESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
               +  KL+   +  VD  ES  + +    VH+NCI  IVP +      +  FSTSGLD
Sbjct: 301 GSETSARKLF---QNKVDLGESKSADKKLTTVHQNCITSIVPFKSVG-GVVSDFSTSGLD 358

Query: 361 GKVAIWDLE 369
           G + +W ++
Sbjct: 361 GNIVVWHVK 358

[Close]

BLAST of Cp4.1LG04g02460 vs. Swiss-Prot
Match: ARC1B_MOUSE (Actin-related protein 2/3 complex subunit 1B OS=Mus musculus GN=Arpc1b PE=1 SV=4)

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-78
Identity = 149/367 (40.60%), Postives = 223/367 (60.76%), Query Frame = 1


Query: 4   IAVHGF-AQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDW 63
           +A H F  + I+CHAW+ D + +A CPNN+EVHIY+     W ++H L++H+  ++GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query: 64  SVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 123
           + +SNRIVT   DRN+YVW L+G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct: 61  APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query: 124 CICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKD 183
            ICY+EQEN+WWV K ++K   S+V ++ WHPNN+LLA  S D KCRIFS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 184 SKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLAQN 243
           +     S   FGEL+ +   S  W  GV +S SG  +A+  H+S +  VD      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVA-T 240

Query: 244 VALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKT-ASASKYGSQ 303
           +A   LPL  + F++E  ++  G DC P++F  D   +   + F G       +S+ G  
Sbjct: 241 LASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAV--TLSFGGRLDVPKQSSQRGMT 300

Query: 304 FSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDGK 363
             E F  L    +   +  +   + L  + H+N ++ I  L   + +   +F T+G+DG 
Sbjct: 301 ARERFQNL--DKKASSEGGAATGAGLDSL-HKNSVSQISVLSGGK-AKCSQFCTTGMDGG 360

Query: 364 VAIWDLE 369
           ++IWD++
Sbjct: 361 MSIWDVK 360

[Close]

BLAST of Cp4.1LG04g02460 vs. Swiss-Prot
Match: ARC1B_RAT (Actin-related protein 2/3 complex subunit 1B OS=Rattus norvegicus GN=Arpc1b PE=1 SV=3)

HSP 1 Score: 293.1 bits (749), Expect = 4.3e-78
Identity = 152/367 (41.42%), Postives = 222/367 (60.49%), Query Frame = 1


Query: 4   IAVHGF-AQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDW 63
           +A H F  + I+CHAW+ D + +A CPNN+EVHIY+     W ++H L++H+  ++GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query: 64  SVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 123
           + +SNRIVT   DRN+YVW L+G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct: 61  APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query: 124 CICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKD 183
            ICY+EQEN+WWV K ++K   S+V ++ WHPNN+LLA  S D KCRIFS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 184 SKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLAQN 243
           +     S   FGEL+ +   S  W  GV +S  G  +A+  H+S +  VD      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVA-T 240

Query: 244 VALRDLPLRDILFVSERMVIGVGFDCNPMVFAADE-RGIWSFIRFLGERKTASASKYGSQ 303
           +A   LPL  I F++E  ++  G DC P++F  D   G  SF   L   K    S+ G  
Sbjct: 241 LASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPK--QNSQRGLT 300

Query: 304 FSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDGK 363
             E F  L    +   +  +   + L  + H+N ++ I  L   + +   +F T+G+DG 
Sbjct: 301 ARERFQNL--DKKASSEGGAATGAGLDSL-HKNSVSQISVLSGGK-AKCSQFCTTGMDGG 360

Query: 364 VAIWDLE 369
           ++IWD++
Sbjct: 361 MSIWDVK 360

[Close]

BLAST of Cp4.1LG04g02460 vs. TrEMBL
Match: A0A0A0KHX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G422800 PE=4 SV=1)

HSP 1 Score: 741.1 bits (1912), Expect = 6.6e-211
Identity = 351/379 (92.61%), Postives = 363/379 (95.78%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           MTAIAVH FA CITCHAWSPDHSMVAFCPNNNEVHIYKS+QDNWER+HVLQKHDQ+ISGI
Sbjct: 1   MTAIAVHQFAHCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDSKAG FSDSKFGELIVQLDLSFSWAFGVKWS SG TLAYAGHNSMIYFVDE+GPSPLA
Sbjct: 181 KDSKAGTFSDSKFGELIVQLDLSFSWAFGVKWSASGNTLAYAGHNSMIYFVDEVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           Q+VA RDLPLRDILFVSERMVIGVGFDC+PM FAADERGIWSF+RFLGE+KTAS SKYGS
Sbjct: 241 QSVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGEKKTASGSKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRE--RRVSTIKRFSTSGL 360
           QFSEAFGKLYGQPRQGV N+SVESSRLRG VHENCINCIVPL+E   R STIKRFSTSGL
Sbjct: 301 QFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSGL 360

Query: 361 DGKVAIWDLEGQADLSQYL 378
           DGKV IWDLEGQ DLSQYL
Sbjct: 361 DGKVVIWDLEGQDDLSQYL 379

[Close]

BLAST of Cp4.1LG04g02460 vs. TrEMBL
Match: A0A067EU28_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016982mg PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 7.6e-191
Identity = 312/377 (82.76%), Postives = 339/377 (89.92%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH FAQCITCHAWSPDH+MVAFCPNNNEVHIYK +Q+ WE++HVLQKHDQI+SGI
Sbjct: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+ LATTSTDGKCR+FSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           K+ K G  SD+KFGE I+QLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASAS-KYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADE GIW+FI+FL ERKT+S+  KYG
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + GV N++VESSR RG  H NCINCIVPLRE   S I RF+TSGLD
Sbjct: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360

Query: 361 GKVAIWDLEGQADLSQY 377
           GK+  WDLE Q DL  Y
Sbjct: 361 GKIVTWDLESQEDLLNY 377

[Close]

BLAST of Cp4.1LG04g02460 vs. TrEMBL
Match: V4U5S0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015615mg PE=4 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 7.6e-191
Identity = 312/377 (82.76%), Postives = 339/377 (89.92%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH FAQCITCHAWSPDH+MVAFCPNNNEVHIYK +Q+ WE++HVLQKHDQI+SGI
Sbjct: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+ LATTSTDGKCR+FSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           K+ K G  SD+KFGE I+QLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASAS-KYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADE GIW+FI+FL ERKT+S+  KYG
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + GV N++VESSR RG  H NCINCIVPLRE   S I RF+TSGLD
Sbjct: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360

Query: 361 GKVAIWDLEGQADLSQY 377
           GK+  WDLE Q DL  Y
Sbjct: 361 GKIVTWDLESQEDLLNY 377

[Close]

BLAST of Cp4.1LG04g02460 vs. TrEMBL
Match: A0A061DJX7_THECC (Actin-related protein C1A isoform 1 OS=Theobroma cacao GN=TCM_001800 PE=4 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 2.2e-190
Identity = 311/378 (82.28%), Postives = 345/378 (91.27%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M A+AVH FAQCITCHAWSPD SMVAFCPNNNEVHIYK ++D WE++HVLQKHDQI++GI
Sbjct: 1   MAAVAVHQFAQCITCHAWSPDQSMVAFCPNNNEVHIYKLLEDKWEKVHVLQKHDQIVTGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVT SHDRNSYVWN EG+EWVPTLVILRLNRAALCVQWSP+ENKFAVGSGAK
Sbjct: 61  DWSGRSNRIVTVSHDRNSYVWNQEGAEWVPTLVILRLNRAALCVQWSPRENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RK+HDSSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKKHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           ++SK  + SDSKFGE IVQLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 RESKTSSSSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERK-TASASKYG 300
           QNVA R+LPLRD+LFVSE+MVIGVGFDCNPMVFAAD+ GIWSFIRFLGERK ++S+SKYG
Sbjct: 241 QNVAFRNLPLRDVLFVSEKMVIGVGFDCNPMVFAADDSGIWSFIRFLGERKASSSSSKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + G+ N++VE SR  G+VHENCINCIVPLR+    T KRFSTSGLD
Sbjct: 301 SQFSEAFGKLYGQSKHGLSNDTVEPSRAHGVVHENCINCIVPLRKEGPRT-KRFSTSGLD 360

Query: 361 GKVAIWDLEGQADLSQYL 378
           GKV IWDLE Q  +S YL
Sbjct: 361 GKVVIWDLENQEVVSDYL 377

[Close]

BLAST of Cp4.1LG04g02460 vs. TrEMBL
Match: B9IA44_POPTR (Putative ARP2/3 protein complex subunit p41 OS=Populus trichocarpa GN=POPTR_0014s13810g PE=4 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 8.4e-190
Identity = 311/378 (82.28%), Postives = 337/378 (89.15%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M A+ VH FAQCITCHAWS D SM+AFCPNNNEVHIY+  QD WE++HVLQKHDQI+ GI
Sbjct: 1   MAAVEVHQFAQCITCHAWSADRSMIAFCPNNNEVHIYRLSQDKWEKVHVLQKHDQIVCGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVTASHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTASHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQ+NNWWVSKL+RKRHDSSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVDT
Sbjct: 121 TVCICYYEQDNNWWVSKLIRKRHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           +DSKAG+ SDSKFGE IVQLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 RDSKAGSVSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERK-TASASKYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADERGIWSFIRFLGERK T S S+Y 
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADERGIWSFIRFLGERKSTLSGSRYS 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGK YGQ + G  N+ +E SR RG +HENCI+CI+ L E   S   RFSTSGLD
Sbjct: 301 SQFSEAFGKFYGQSKYGASNDGIEPSRSRGGIHENCISCIMSLTESGSSRKTRFSTSGLD 360

Query: 361 GKVAIWDLEGQADLSQYL 378
           GKV +WDLE Q DLS YL
Sbjct: 361 GKVVVWDLENQEDLSGYL 378

[Close]

BLAST of Cp4.1LG04g02460 vs. TAIR10
Match: AT2G30910.1 (AT2G30910.1 actin-related protein C1A)

HSP 1 Score: 609.8 bits (1571), Expect = 1.2e-174
Identity = 286/370 (77.30%), Postives = 326/370 (88.11%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFA+D+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+NCIN IV L +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASESRGGVHDNCINSIVSLSKAGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGKVAIWDLE
Sbjct: 361 DGKVAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460 vs. TAIR10
Match: AT2G31300.1 (AT2G31300.1 actin-related protein C1B)

HSP 1 Score: 605.9 bits (1561), Expect = 1.7e-173
Identity = 285/370 (77.03%), Postives = 325/370 (87.84%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSV-QDNWERIHVLQKHDQIISG 60
           M  + VH FA+ ITCHAWSPD SMVA CPNN EVHIYKS+ QD+WER+HVLQKHDQI+SG
Sbjct: 1   MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query: 61  IDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120
           IDWS KSN+IVT SHDRNSYVW+LEG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 121 KTVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVD 180
           KTVCICYYEQENNWWVSKL+RKRH+SSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVD
Sbjct: 121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query: 181 TKDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPL 240
           TKDSKAG+ +++KFGE I+QLDLS+SWAFGVKWSPSG TLAY GH+SMIYFVD++GPSPL
Sbjct: 181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query: 241 AQNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASA-SKY 300
           AQ+VA RDLPLRD+LF+SE+MVIGVG+D NPMVFAAD+ GIWSFIR++GE+K AS+ S Y
Sbjct: 241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSY 300

Query: 301 GSQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGL 360
            SQFSEAFGK YG   Q     + ++S  RG VH+N I  IVPL +     + RFSTSGL
Sbjct: 301 SSQFSEAFGKFYGS--QSKSTTANDASDSRGGVHDNSITSIVPLGKGGSPKVMRFSTSGL 360

Query: 361 DGKVAIWDLE 369
           DGK+AIWDLE
Sbjct: 361 DGKIAIWDLE 368

[Close]

BLAST of Cp4.1LG04g02460 vs. TAIR10
Match: AT5G67320.1 (AT5G67320.1 WD-40 repeat family protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-07
Identity = 42/167 (25.15%), Postives = 68/167 (40.72%), Query Frame = 1


Query: 13  ITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGIDWSVKSNRIVTA 72
           +T   W+ + +++A    + +  I+     N E I  L KH   I  + W+ K + ++T 
Sbjct: 327 VTTLDWNGEGTLLATGSCDGQARIWTL---NGELISTLSKHKGPIFSLKWNKKGDYLLTG 386

Query: 73  SHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN 132
           S DR + VW+++  EW         +   L V W      FA  S    + +C   +   
Sbjct: 387 SVDRTAVVWDVKAEEWKQQFEF--HSGPTLDVDWR-NNVSFATSSTDSMIYLCKIGETR- 446

Query: 133 WWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIF----STFI 176
                     H   V  V W P   LLA+ S D   +I+    STF+
Sbjct: 447 ---PAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFV 483

[Close]

BLAST of Cp4.1LG04g02460 vs. TAIR10
Match: AT3G49660.1 (AT3G49660.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-07
Identity = 39/133 (29.32%), Postives = 65/133 (48.87%), Query Frame = 1


Query: 45  ERIHVLQKHDQIISGIDWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCV 104
           E +     H+  IS + +S  +  IV+AS D+   +W++E    + TL+       A CV
Sbjct: 62  EPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLI--GHTNYAFCV 121

Query: 105 QWSPKENKFAVGSGAKTVCICYYEQENNWWVS--KLLR--KRHDSSVTNVAWHPNNLLLA 164
            ++P+ N    GS  +TV I        W V+  K L+    H   VT V ++ +  L+ 
Sbjct: 122 NFNPQSNMIVSGSFDETVRI--------WDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIV 181

Query: 165 TTSTDGKCRIFST 174
           ++S DG CRI+ +
Sbjct: 182 SSSYDGLCRIWDS 184

[Close]

BLAST of Cp4.1LG04g02460 vs. NCBI nr
Match: gi|659097216|ref|XP_008449504.1| (PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis melo])

HSP 1 Score: 753.1 bits (1943), Expect = 2.4e-214
Identity = 354/377 (93.90%), Postives = 365/377 (96.82%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           MTAIAVH FAQCITCHAWSPDHSMVAFCPNNNEVHIYKS+QDNWER+HVLQKHDQ+ISGI
Sbjct: 1   MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDS+AG FSDSKFGELIVQLDLSFSWAFGVKWSPSG TLAYAGHNSMIYFVDE+GPSPLA
Sbjct: 181 KDSRAGTFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           QNVA RDLPLRDILFVSERMVIGVGFDC+PM FAADERGIWSF+RFLGERKTAS SKYGS
Sbjct: 241 QNVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGERKTASGSKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDG 360
           QFSEAFGKLYGQPRQGV N+SVESSRLRG VHENCINCIVPL+E  VSTIKRFSTSGLDG
Sbjct: 301 QFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGVSTIKRFSTSGLDG 360

Query: 361 KVAIWDLEGQADLSQYL 378
           KV IWDLEGQ DLSQYL
Sbjct: 361 KVVIWDLEGQDDLSQYL 377

[Close]

BLAST of Cp4.1LG04g02460 vs. NCBI nr
Match: gi|449444749|ref|XP_004140136.1| (PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis sativus])

HSP 1 Score: 741.1 bits (1912), Expect = 9.5e-211
Identity = 351/379 (92.61%), Postives = 363/379 (95.78%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           MTAIAVH FA CITCHAWSPDHSMVAFCPNNNEVHIYKS+QDNWER+HVLQKHDQ+ISGI
Sbjct: 1   MTAIAVHQFAHCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDSKAG FSDSKFGELIVQLDLSFSWAFGVKWS SG TLAYAGHNSMIYFVDE+GPSPLA
Sbjct: 181 KDSKAGTFSDSKFGELIVQLDLSFSWAFGVKWSASGNTLAYAGHNSMIYFVDEVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           Q+VA RDLPLRDILFVSERMVIGVGFDC+PM FAADERGIWSF+RFLGE+KTAS SKYGS
Sbjct: 241 QSVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGEKKTASGSKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRE--RRVSTIKRFSTSGL 360
           QFSEAFGKLYGQPRQGV N+SVESSRLRG VHENCINCIVPL+E   R STIKRFSTSGL
Sbjct: 301 QFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSGL 360

Query: 361 DGKVAIWDLEGQADLSQYL 378
           DGKV IWDLEGQ DLSQYL
Sbjct: 361 DGKVVIWDLEGQDDLSQYL 379

[Close]

BLAST of Cp4.1LG04g02460 vs. NCBI nr
Match: gi|1009126797|ref|XP_015880348.1| (PREDICTED: actin-related protein 2/3 complex subunit 1B-like [Ziziphus jujuba])

HSP 1 Score: 675.6 bits (1742), Expect = 4.9e-191
Identity = 310/377 (82.23%), Postives = 338/377 (89.66%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH  AQ ITCHAWSPDHSMVA CPNNNEVHIY+ +QD WE++HVLQKHDQI+SG+
Sbjct: 1   MAAIAVHQLAQSITCHAWSPDHSMVAVCPNNNEVHIYRLLQDKWEKMHVLQKHDQIVSGV 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVC+CYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+LLAT STDGKCR+FSTFIKGVD 
Sbjct: 121 TVCVCYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNILLATASTDGKCRVFSTFIKGVDP 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           KDS+ G  SDSKFGE IVQLDLSFSW+FGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KDSRTGPSSDSKFGEQIVQLDLSFSWSFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASASKYGS 300
           QNVA RDLPLRD++FVSER+VIGVGFDCNPMVF ADERGIWSF+RFL  ++T+S  KYGS
Sbjct: 241 QNVAFRDLPLRDVIFVSERLVIGVGFDCNPMVFGADERGIWSFLRFLERKRTSSGPKYGS 300

Query: 301 QFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLDG 360
           QFSEAFGKLYGQ + GV N+ +E SR RG VHEN INC+VPLRE   ST  RFSTSG+DG
Sbjct: 301 QFSEAFGKLYGQSKHGVGNDGIEPSRSRGGVHENFINCVVPLRESGKSTATRFSTSGMDG 360

Query: 361 KVAIWDLEGQADLSQYL 378
           KV IWDLE Q DLS YL
Sbjct: 361 KVVIWDLENQTDLSDYL 377

[Close]

BLAST of Cp4.1LG04g02460 vs. NCBI nr
Match: gi|567911407|ref|XP_006448017.1| (hypothetical protein CICLE_v10015615mg [Citrus clementina])

HSP 1 Score: 674.5 bits (1739), Expect = 1.1e-190
Identity = 312/377 (82.76%), Postives = 339/377 (89.92%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M AIAVH FAQCITCHAWSPDH+MVAFCPNNNEVHIYK +Q+ WE++HVLQKHDQI+SGI
Sbjct: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSV+SNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RKRHDSSVT+VAWHPNN+ LATTSTDGKCR+FSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           K+ K G  SD+KFGE I+QLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERKTASAS-KYG 300
           QNVA RDLPLRD+LFVSE+MVIGVGFDCNPMVFAADE GIW+FI+FL ERKT+S+  KYG
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + GV N++VESSR RG  H NCINCIVPLRE   S I RF+TSGLD
Sbjct: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360

Query: 361 GKVAIWDLEGQADLSQY 377
           GK+  WDLE Q DL  Y
Sbjct: 361 GKIVTWDLESQEDLLNY 377

[Close]

BLAST of Cp4.1LG04g02460 vs. NCBI nr
Match: gi|590710275|ref|XP_007048783.1| (Actin-related protein C1A isoform 1 [Theobroma cacao])

HSP 1 Score: 672.9 bits (1735), Expect = 3.2e-190
Identity = 311/378 (82.28%), Postives = 345/378 (91.27%), Query Frame = 1


Query: 1   MTAIAVHGFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSVQDNWERIHVLQKHDQIISGI 60
           M A+AVH FAQCITCHAWSPD SMVAFCPNNNEVHIYK ++D WE++HVLQKHDQI++GI
Sbjct: 1   MAAVAVHQFAQCITCHAWSPDQSMVAFCPNNNEVHIYKLLEDKWEKVHVLQKHDQIVTGI 60

Query: 61  DWSVKSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS +SNRIVT SHDRNSYVWN EG+EWVPTLVILRLNRAALCVQWSP+ENKFAVGSGAK
Sbjct: 61  DWSGRSNRIVTVSHDRNSYVWNQEGAEWVPTLVILRLNRAALCVQWSPRENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLLRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180
           TVCICYYEQENNWWVSKL+RK+HDSSVT+VAWHPNN+LLATTSTDGKCR+FSTFIKGVDT
Sbjct: 121 TVCICYYEQENNWWVSKLIRKKHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KDSKAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGKTLAYAGHNSMIYFVDEIGPSPLA 240
           ++SK  + SDSKFGE IVQLDLSFSWAFGVKWSPSG TLAY GHNSMIYFVD++GPSPLA
Sbjct: 181 RESKTSSSSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVALRDLPLRDILFVSERMVIGVGFDCNPMVFAADERGIWSFIRFLGERK-TASASKYG 300
           QNVA R+LPLRD+LFVSE+MVIGVGFDCNPMVFAAD+ GIWSFIRFLGERK ++S+SKYG
Sbjct: 241 QNVAFRNLPLRDVLFVSEKMVIGVGFDCNPMVFAADDSGIWSFIRFLGERKASSSSSKYG 300

Query: 301 SQFSEAFGKLYGQPRQGVDNESVESSRLRGIVHENCINCIVPLRERRVSTIKRFSTSGLD 360
           SQFSEAFGKLYGQ + G+ N++VE SR  G+VHENCINCIVPLR+    T KRFSTSGLD
Sbjct: 301 SQFSEAFGKLYGQSKHGLSNDTVEPSRAHGVVHENCINCIVPLRKEGPRT-KRFSTSGLD 360

Query: 361 GKVAIWDLEGQADLSQYL 378
           GKV IWDLE Q  +S YL
Sbjct: 361 GKVVIWDLENQEVVSDYL 377

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g02460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARC1A_ARATH	2.1e-173	77.30	Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana GN=ARPC1A P...	[more]
ARC1B_ARATH	3.0e-172	77.03	Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana GN=ARPC1B P...	[more]
ARPC1_DICDI	1.7e-90	43.90	Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA ...	[more]
ARC1B_MOUSE	1.1e-78	40.60	Actin-related protein 2/3 complex subunit 1B OS=Mus musculus GN=Arpc1b PE=1 SV=4	[more]
ARC1B_RAT	4.3e-78	41.42	Actin-related protein 2/3 complex subunit 1B OS=Rattus norvegicus GN=Arpc1b PE=1...	[more]

BLAST of Cp4.1LG04g02460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHX9_CUCSA	6.6e-211	92.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G422800 PE=4 SV=1	[more]
A0A067EU28_CITSI	7.6e-191	82.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016982mg PE=4 SV=1	[more]
V4U5S0_9ROSI	7.6e-191	82.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015615mg PE=4 SV=1	[more]
A0A061DJX7_THECC	2.2e-190	82.28	Actin-related protein C1A isoform 1 OS=Theobroma cacao GN=TCM_001800 PE=4 SV=1	[more]
B9IA44_POPTR	8.4e-190	82.28	Putative ARP2/3 protein complex subunit p41 OS=Populus trichocarpa GN=POPTR_0014...	[more]

BLAST of Cp4.1LG04g02460 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30910.1	1.2e-174	77.30	actin-related protein C1A	[more]
AT2G31300.1	1.7e-173	77.03	actin-related protein C1B	[more]
AT5G67320.1	1.9e-07	25.15	WD-40 repeat family protein	[more]
AT3G49660.1	1.9e-07	29.32	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Cp4.1LG04g02460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097216\|ref\|XP_008449504.1\|	2.4e-214	93.90	PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis melo]	[more]
gi\|449444749\|ref\|XP_004140136.1\|	9.5e-211	92.61	PREDICTED: actin-related protein 2/3 complex subunit 1A-like [Cucumis sativus]	[more]
gi\|1009126797\|ref\|XP_015880348.1\|	4.9e-191	82.23	PREDICTED: actin-related protein 2/3 complex subunit 1B-like [Ziziphus jujuba]	[more]
gi\|567911407\|ref\|XP_006448017.1\|	1.1e-190	82.76	hypothetical protein CICLE_v10015615mg [Citrus clementina]	[more]
gi\|590710275\|ref\|XP_007048783.1\|	3.2e-190	82.28	Actin-related protein C1A isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0034314	Arp2/3 complex-mediated actin nucleation
GO:0030833	regulation of actin filament polymerization

Vocabulary: **Cellular Component**
Term	Definition
GO:0015629	actin cytoskeleton
GO:0005885	Arp2/3 protein complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024977	Apc4_WD40_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR017383	ARPC1
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0006412	translation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003779	actin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g02460.1	Cp4.1LG04g02460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 45..82 score: 0
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 87..126 score: 7.9coord: 2..38 score: 410.0coord: 320..366 score: 190.0coord: 43..82 score: 1.1E-4coord: 193..232 score: 5.2coord: 132..172 score: 1.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 50..91 score: 11.478coord: 140..172 score:
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 8..243 score: 3.0E-49coord: 331..370 score: 3.0
IPR017383	Actin-related protein 2/3 complex subunit 1	PIR	PIRSF038093	ARPC1	coord: 1..371 score: 7.6E
IPR017383	Actin-related protein 2/3 complex subunit 1	PANTHER	PTHR10709	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1	coord: 1..368 score: 9.3E
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 6..181 score: 13
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 318..373 score: 1.01E-48coord: 11..286 score: 1.01
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 69..83 scor
IPR024977	Anaphase-promoting complex subunit 4, WD40 domain	PFAM	PF12894	ANAPC4_WD40	coord: 104..172 score: 8.
None	No IPR available	PANTHER	PTHR10709:SF2	ACTIN RELATED COMPLEX P41 SUBUNIT	coord: 1..368 score: 9.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g02460	Cucsa.185260	Cucumber (Gy14) v1	cgycpeB0511
Cp4.1LG04g02460	CmaCh11G019470	Cucurbita maxima (Rimu)	cmacpeB148
Cp4.1LG04g02460	CmaCh19G010600	Cucurbita maxima (Rimu)	cmacpeB537
Cp4.1LG04g02460	CmoCh11G020270	Cucurbita moschata (Rifu)	cmocpeB126
Cp4.1LG04g02460	Cla005541	Watermelon (97103) v1	cpewmB626
Cp4.1LG04g02460	Csa6G422800	Cucumber (Chinese Long) v2	cpecuB683
Cp4.1LG04g02460	ClCG09G022250	Watermelon (Charleston Gray)	cpewcgB574
Cp4.1LG04g02460	CSPI06G22810	Wild cucumber (PI 183967)	cpecpiB687
Cp4.1LG04g02460	Lsi11G016520	Bottle gourd (USVL1VR-Ls)	cpelsiB531
Cp4.1LG04g02460	MELO3C031066.2	Melon (DHL92) v3.6.1	cpemedB758
Cp4.1LG04g02460	CsaV3_6G037940	Cucumber (Chinese Long) v3	cpecucB0854
Cp4.1LG04g02460	Bhi05G001784	Wax gourd	cpewgoB0854
Cp4.1LG04g02460	CsGy6G022020	Cucumber (Gy14) v2	cgybcpeB838
Cp4.1LG04g02460	Carg15696	Silver-seed gourd	carcpeB0754
Cp4.1LG04g02460	Carg04653	Silver-seed gourd	carcpeB0547

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG04g02460	Cp4.1LG15g08630	Cucurbita pepo (Zucchini)	cpecpeB267

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g02460	Silver-seed gourd	carcpeB0047
Cp4.1LG04g02460	Silver-seed gourd	carcpeB0474
Cp4.1LG04g02460	Cucumber (Chinese Long) v3	cpecucB0856
Cp4.1LG04g02460	Wax gourd	cpewgoB0865
Cp4.1LG04g02460	Cucurbita pepo (Zucchini)	cpecpeB306
Cp4.1LG04g02460	Cucurbita pepo (Zucchini)	cpecpeB492
Cp4.1LG04g02460	Cucurbita maxima (Rimu)	cmacpeB573
Cp4.1LG04g02460	Cucurbita maxima (Rimu)	cmacpeB642
Cp4.1LG04g02460	Cucurbita moschata (Rifu)	cmocpeB492
Cp4.1LG04g02460	Cucurbita moschata (Rifu)	cmocpeB524
Cp4.1LG04g02460	Cucurbita moschata (Rifu)	cmocpeB592
Cp4.1LG04g02460	Cucumber (Chinese Long) v2	cpecuB685
Cp4.1LG04g02460	Bottle gourd (USVL1VR-Ls)	cpelsiB523
Cp4.1LG04g02460	Watermelon (Charleston Gray)	cpewcgB592
Cp4.1LG04g02460	Watermelon (97103) v1	cpewmB668
Cp4.1LG04g02460	Melon (DHL92) v3.5.1	cpemeB634
Cp4.1LG04g02460	Cucumber (Gy14) v2	cgybcpeB839