Cp4.1LG04g01940.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTACTCGGTCGGGCTGGCTGCGACTTTCTTCCCATTCTCAACCAAGACACTTCCCAACTTCCCCTATTCCCGTCCCCAGTCCCGACCCGGCCGTCTCCTCGTAAGCGCGGTTGGCGGGTTATCACTAGCCGCCACCGCCGAACTCCTAATGGACAACAAACGCTTAAAAAGAATCACATCAGCTCTATCGCCATTATCATCATGTTCGTCACTCTACGAGCCAGATAACGAGCTAAAACACATGCAATTAGCATCATCATGTTTAAAAAACAAGAAACGTTTATCAAAACAACTTTCAATGTGTGAAACACCAAGAGAACTCGCATGGGAGAAACGACGACGACGAATGCTCCGACCTAGAAACGGAAGCTCGACCGATAGAGATGACTTAACAGACGAAGATTGGAATGAGCTAAAAGGGTGTATCGAATTAGGGTTTGCATTCAACGAGGAAGATGGACATAAGTTGTGTGGTACATTACCAGCTCTTGACTTATACTTCGCCGTGAATCGACAGCTCTCGCCGAGTCCAGTGTCGACGCCGCATAGTAGCACGTCTACGTCGTCGTCGTCGCTCGGGGGACGAGGTTCATCGTGCGAGAGCCCGAGGGGTGATTGTGAAACATGGAGGGTTTGCAGCCCAGGTAAGGAGAGATTTGAGATTGTTTATAATGAAATTAAAGGAATTGAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAATTTGTTCAGGGCAAGATCCGAAGCAAGTGAAGGCAAAATTAAGACATTGGGCTCAAGCAGTGGCATGTTCGGTAATGCAATCATTGGGAGAAAAATAAAAAGGGAATAATGACGTGTACAGAACAGAAGAGAAAAAAAAATTAAAAAAAAAAAAA TTACTCGGTCGGGCTGGCTGCGACTTTCTTCCCATTCTCAACCAAGACACTTCCCAACTTCCCCTATTCCCGTCCCCAGTCCCGACCCGGCCGTCTCCTCGTAAGCGCGGTTGGCGGGTTATCACTAGCCGCCACCGCCGAACTCCTAATGGACAACAAACGCTTAAAAAGAATCACATCAGCTCTATCGCCATTATCATCATGTTCGTCACTCTACGAGCCAGATAACGAGCTAAAACACATGCAATTAGCATCATCATGTTTAAAAAACAAGAAACGTTTATCAAAACAACTTTCAATGTGTGAAACACCAAGAGAACTCGCATGGGAGAAACGACGACGACGAATGCTCCGACCTAGAAACGGAAGCTCGACCGATAGAGATGACTTAACAGACGAAGATTGGAATGAGCTAAAAGGGTGTATCGAATTAGGGTTTGCATTCAACGAGGAAGATGGACATAAGTTGTGTGGTACATTACCAGCTCTTGACTTATACTTCGCCGTGAATCGACAGCTCTCGCCGAGTCCAGTGTCGACGCCGCATAGTAGCACGTCTACGTCGTCGTCGTCGCTCGGGGGACGAGGTTCATCGTGCGAGAGCCCGAGGGGTGATTGTGAAACATGGAGGGTTTGCAGCCCAGGGCAAGATCCGAAGCAAGTGAAGGCAAAATTAAGACATTGGGCTCAAGCAGTGGCATGTTCGGTAATGCAATCATTGGGAGAAAAATAAAAAGGGAATAATGACGTGTACAGAACAGAAGAGAAAAAAAAATTAAAAAAAAAAAAA ATGGACAACAAACGCTTAAAAAGAATCACATCAGCTCTATCGCCATTATCATCATGTTCGTCACTCTACGAGCCAGATAACGAGCTAAAACACATGCAATTAGCATCATCATGTTTAAAAAACAAGAAACGTTTATCAAAACAACTTTCAATGTGTGAAACACCAAGAGAACTCGCATGGGAGAAACGACGACGACGAATGCTCCGACCTAGAAACGGAAGCTCGACCGATAGAGATGACTTAACAGACGAAGATTGGAATGAGCTAAAAGGGTGTATCGAATTAGGGTTTGCATTCAACGAGGAAGATGGACATAAGTTGTGTGGTACATTACCAGCTCTTGACTTATACTTCGCCGTGAATCGACAGCTCTCGCCGAGTCCAGTGTCGACGCCGCATAGTAGCACGTCTACGTCGTCGTCGTCGCTCGGGGGACGAGGTTCATCGTGCGAGAGCCCGAGGGGTGATTGTGAAACATGGAGGGTTTGCAGCCCAGGGCAAGATCCGAAGCAAGTGAAGGCAAAATTAAGACATTGGGCTCAAGCAGTGGCATGTTCGGTAATGCAATCATTGGGAGAAAAATAA MDNKRLKRITSALSPLSSCSSLYEPDNELKHMQLASSCLKNKKRLSKQLSMCETPRELAWEKRRRRMLRPRNGSSTDRDDLTDEDWNELKGCIELGFAFNEEDGHKLCGTLPALDLYFAVNRQLSPSPVSTPHSSTSTSSSSLGGRGSSCESPRGDCETWRVCSPGQDPKQVKAKLRHWAQAVACSVMQSLGEK
BLAST of Cp4.1LG04g01940.1 vs. TrEMBL
Match: A0A0A0LY38_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690230 PE=4 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 1.5e-81 Identity = 161/194 (82.99%), Postives = 173/194 (89.18%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TrEMBL
Match: A0A0S3SQ61_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G161300 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 3.9e-58 Identity = 124/178 (69.66%), Postives = 139/178 (78.09%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TrEMBL
Match: V7BG30_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G188200g PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56 Identity = 121/180 (67.22%), Postives = 138/180 (76.67%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TrEMBL
Match: M5W1A3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016189mg PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 2.2e-56 Identity = 125/194 (64.43%), Postives = 148/194 (76.29%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TrEMBL
Match: V4SEL2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030288mg PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 8.2e-56 Identity = 125/186 (67.20%), Postives = 147/186 (79.03%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TAIR10
Match: AT1G08790.1 (AT1G08790.1 Protein of unknown function (DUF1685)) HSP 1 Score: 183.7 bits (465), Expect = 1.1e-46 Identity = 113/188 (60.11%), Postives = 131/188 (69.68%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TAIR10
Match: AT5G28690.1 (AT5G28690.1 Protein of unknown function (DUF1685)) HSP 1 Score: 166.8 bits (421), Expect = 1.3e-41 Identity = 96/160 (60.00%), Postives = 116/160 (72.50%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TAIR10
Match: AT3G04700.1 (AT3G04700.1 Protein of unknown function (DUF1685)) HSP 1 Score: 166.0 bits (419), Expect = 2.3e-41 Identity = 93/160 (58.13%), Postives = 115/160 (71.88%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TAIR10
Match: AT2G43340.1 (AT2G43340.1 Protein of unknown function (DUF1685)) HSP 1 Score: 87.8 bits (216), Expect = 7.9e-18 Identity = 62/180 (34.44%), Postives = 91/180 (50.56%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. TAIR10
Match: AT2G31560.1 (AT2G31560.1 Protein of unknown function (DUF1685)) HSP 1 Score: 84.7 bits (208), Expect = 6.7e-17 Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. NCBI nr
Match: gi|659125483|ref|XP_008462705.1| (PREDICTED: uncharacterized protein LOC103501007 [Cucumis melo]) HSP 1 Score: 315.5 bits (807), Expect = 6.6e-83 Identity = 163/194 (84.02%), Postives = 173/194 (89.18%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. NCBI nr
Match: gi|449449555|ref|XP_004142530.1| (PREDICTED: uncharacterized protein LOC101212719 [Cucumis sativus]) HSP 1 Score: 310.5 bits (794), Expect = 2.1e-81 Identity = 161/194 (82.99%), Postives = 173/194 (89.18%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. NCBI nr
Match: gi|1009117682|ref|XP_015875448.1| (PREDICTED: uncharacterized protein LOC107412235 [Ziziphus jujuba]) HSP 1 Score: 233.8 bits (595), Expect = 2.5e-58 Identity = 121/176 (68.75%), Postives = 141/176 (80.11%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. NCBI nr
Match: gi|965608470|dbj|BAT94961.1| (hypothetical protein VIGAN_08161300 [Vigna angularis var. angularis]) HSP 1 Score: 232.6 bits (592), Expect = 5.7e-58 Identity = 124/178 (69.66%), Postives = 139/178 (78.09%), Query Frame = 1
BLAST of Cp4.1LG04g01940.1 vs. NCBI nr
Match: gi|951018570|ref|XP_014511842.1| (PREDICTED: uncharacterized protein LOC106770554 [Vigna radiata var. radiata]) HSP 1 Score: 232.3 bits (591), Expect = 7.4e-58 Identity = 123/178 (69.10%), Postives = 139/178 (78.09%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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