Cp4.1LG03g18450.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g18450.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 12248212 .. 12249274 (-)
Sequence length961
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGATCTCTGTGTTCTCAGAGCAAAGCTACCAATGGCGTCTTTCTCACTGCGTGCAGTGGCTTTTTGGGTGTGTGTGGGGATTGCCTTGGTCGGAGCCGACAATGTGGTAGAAGATGACAAGCGTTTGTTTCATCGGCCACTTGGTTTTTTGAAGGGTAGAGGGTTTCGCGGAGGTGGCCTCGGTGGAGGTTTTGGTGGCGGTGGCGGTGGAGGTTTTGGTGGCGGAGTTGGAGGTGGATTTGGTGGGGGAGCTGGTGGTGGGTTTGGTGGTGGAGCTGGTGGCGGCGGCGGTCTAGGCGGTGGAGGTGGGTTGGGAGGTGGCGGTGGTTTGGGTGGTGGAGGAGGGCTTGGAGGCGGTGGTGGTTTGGGTGGTGGAGGAGGGCTTGGAGGCGGTGGTGGTTTGGGTGGTGGAGGAGGCTTAGGGCATGGCATTTATAAAAGGGGGTTTAAAAGTGGAGGACTAGGTGGTGGTGGTGGATTGGGTGGTGGTGGAGGGCTCGGCGGAGGAGGTGGTTTAGGAGGTGGAGGAGGCATTGGGCATGGTATTTACAAAAGGGGTTTTAAGGGTGGAGGACTTGGAGGTGGAGGTGGTATTGGCGGCGGCGGAGGACTTGGAGGTGGTAGCGGTCTAGGTGGCGGCGGAGGACTTGGAGGTGGAGGTGGTCTTGGTGGTGGCGGAGGACTTGGAGGTGTTGGTGGTCTCGGTGGAGGTGGAGGACTTGGAGGAGGAGTTGGTGGCGGTCTTGGAGGAGGAGCTGGTGGCGGTCTAGGTGGAGGAGCTGGTGGCGGTCTAGGTGGAGGAGCTGGTGGGGGTCTGGGAGTTGGAGCTGGTGGGGGTCTGGGAGGAGGAGCTGGTGGCGGTCTTGGAGGAGGAGCTGGTGGTGGGTTTGGTGGCGGAGGTGGTGTAGGTTCTGGAGTCGGATTTGGAGGAGGAGCAGGAAGTGGAGTTGGTATTGGTGGTGGCGGTGGGGGTGGCGGAGGGTTCGGCGGAGGTGGTGGCATAGGTGGTGGTGCCGGTTTCGGCGGTGGAGCGGGGTTTGGCGGTGGTGGCGGCCACCAC

mRNA sequence

GTTTGATCTCTGTGTTCTCAGAGCAAAGCTACCAATGGCGTCTTTCTCACTGCGTGCAGTGGCTTTTTGGGTGTGTGTGGGGATTGCCTTGGTCGGAGCCGACAATGTGGTAGAAGATGACAAGCGTTTGTTTCATCGGCCACTTGGTTTTTTGAAGGGTAGAGGGTTTCGCGGAGGTGGCCTCGGTGGAGGTTTTGGTGGCGGTGGCGGTGGAGGTTTTGGTGGCGGAGTTGGAGGTGGATTTGGTGGGGGAGCTGGTGGTGGGTTTGGTGGTGGAGCTGGTGGCGGCGGCGGTCTAGGCGGTGGAGGTGGGTTGGGAGGTGGCGGTGGTTTGGGTGGTGGAGGAGGGCTTGGAGGCGGTGGTGGTTTGGGTGGTGGAGGAGGGCTTGGAGGCGGTGGTGGTTTGGGTGGTGGAGGAGGCTTAGGGCATGGCATTTATAAAAGGGGGTTTAAAAGTGGAGGACTAGGTGGTGGTGGTGGATTGGGTGGTGGTGGAGGGCTCGGCGGAGGAGGTGGTTTAGGAGGTGGAGGAGGCATTGGGCATGGTATTTACAAAAGGGGTTTTAAGGGTGGAGGACTTGGAGGTGGAGGTGGTATTGGCGGCGGCGGAGGACTTGGAGGTGGTAGCGGTCTAGGTGGCGGCGGAGGACTTGGAGGTGGAGGTGGTCTTGGTGGTGGCGGAGGACTTGGAGGTGTTGGTGGTCTCGGTGGAGGTGGAGGACTTGGAGGAGGAGTTGGTGGCGGTCTTGGAGGAGGAGCTGGTGGCGGTCTAGGTGGAGGAGCTGGTGGCGGTCTAGGTGGAGGAGCTGGTGGGGGTCTGGGAGTTGGAGCTGGTGGGGGTCTGGGAGGAGGAGCTGGTGGCGGTCTTGGAGGAGGAGCTGGTGGTGGGTTTGGTGGCGGAGGTGGTGGTGGTGCCGGTTTCGGCGGTGGAGCGGGGTTTGGCGGTGGTGGCGGCCACCAC

Coding sequence (CDS)

ATGGCGTCTTTCTCACTGCGTGCAGTGGCTTTTTGGGTGTGTGTGGGGATTGCCTTGGTCGGAGCCGACAATGTGGTAGAAGATGACAAGCGTTTGTTTCATCGGCCACTTGGTTTTTTGAAGGGTAGAGGGTTTCGCGGAGGTGGCCTCGGTGGAGGTTTTGGTGGCGGTGGCGGTGGAGGTTTTGGTGGCGGAGTTGGAGGTGGATTTGGTGGGGGAGCTGGTGGTGGGTTTGGTGGTGGAGCTGGTGGCGGCGGCGGTCTAGGCGGTGGAGGTGGGTTGGGAGGTGGCGGTGGTTTGGGTGGTGGAGGAGGGCTTGGAGGCGGTGGTGGTTTGGGTGGTGGAGGAGGGCTTGGAGGCGGTGGTGGTTTGGGTGGTGGAGGAGGCTTAGGGCATGGCATTTATAAAAGGGGGTTTAAAAGTGGAGGACTAGGTGGTGGTGGTGGATTGGGTGGTGGTGGAGGGCTCGGCGGAGGAGGTGGTTTAGGAGGTGGAGGAGGCATTGGGCATGGTATTTACAAAAGGGGTTTTAAGGGTGGAGGACTTGGAGGTGGAGGTGGTATTGGCGGCGGCGGAGGACTTGGAGGTGGTAGCGGTCTAGGTGGCGGCGGAGGACTTGGAGGTGGAGGTGGTCTTGGTGGTGGCGGAGGACTTGGAGGTGTTGGTGGTCTCGGTGGAGGTGGAGGACTTGGAGGAGGAGTTGGTGGCGGTCTTGGAGGAGGAGCTGGTGGCGGTCTAGGTGGAGGAGCTGGTGGCGGTCTAGGTGGAGGAGCTGGTGGGGGTCTGGGAGTTGGAGCTGGTGGGGGTCTGGGAGGAGGAGCTGGTGGCGGTCTTGGAGGAGGAGCTGGTGGTGGGTTTGGTGGCGGAGGTGGTGGTGGTGCCGGTTTCGGCGGTGGAGCGGGGTTTGGCGGTGGTGGCGGCCACCAC

Protein sequence

MASFSLRAVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRGFRGGGLGGGFGGGGGGGFGGGVGGGFGGGAGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIGGGGGLGGGSGLGGGGGLGGGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLGGGAGGGLGGGAGGGLGGGAGGGLGVGAGGGLGGGAGGGLGGGAGGGFGGGGGGGAGFGGGAGFGGGGGHH
Homology
[Close]
BLAST of Cp4.1LG03g18450.1 vs. TrEMBL
Match: A0A0A0L443_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131980 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 249/314 (79.30%), Postives = 253/314 (80.57%), Query Frame = 1 

Query: 1   MASFSLRAVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRG-FRGGGLGGGFGGGGG 60
           MA FSLRAV F  CV IALV ADN VED+K LFHRPLGF KGR  FRGGGLGGG GGGGG
Sbjct: 1   MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGGLGGGIGGGGG 60

Query: 61  GGFGGGVGGGFGGGAGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLG 120
             FGGG GGG G G GGG GGG G GGG GG      GGGLGGGGGLGGGGGLGGGGGLG
Sbjct: 61  --FGGGAGGGGGLGGGGGLGGGGGFGGGAGG------GGGLGGGGGLGGGGGLGGGGGLG 120

Query: 121 GGGGLGGGGGLGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKG 180
           GGGGLGGGGGLGHGIYKRG+K GGLGGGGGLGGGGGLGGGGGL      GHGIYKRGFK 
Sbjct: 121 GGGGLGGGGGLGHGIYKRGYKRGGLGGGGGLGGGGGLGGGGGL------GHGIYKRGFKR 180

Query: 181 GGLGGGGGIGGGGGLGGGSGLGGGGGLGGGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLG 240
           GGLGGGGG+GGGGGLGGG GLGGGGGLGGGGGLGGGGGLGG GGLGGGGG G G GGGLG
Sbjct: 181 GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGGGFGGGGGLG 240

Query: 241 GGAGGGLGGGAGGGLGGGAGGGL----GVGAGGGLGGGAGGGLGGGAGGGFGGGGGGGAG 300
           GG+GGGLGGG GGG GGGAGGG     G G GGG GGG G G GGG GGG GGG GGG G
Sbjct: 241 GGSGGGLGGGVGGGYGGGAGGGFGGGGGAGGGGGFGGGGGAGGGGGIGGGAGGGYGGGGG 298

Query: 301 FGGGAGFGGGGGHH 310
           FGGG GF  GGGHH
Sbjct: 301 FGGGGGF--GGGHH 298

[Close]
BLAST of Cp4.1LG03g18450.1 vs. TrEMBL
Match: A0A067KT37_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01138 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 221/314 (70.38%), Postives = 227/314 (72.29%), Query Frame = 1 

Query: 15  VGIALVGADNVVEDDKR----LFHRPL-------GFLKGRGFRGGGLGGGFGGGGGGGFG 74
           V    V AD V  DDK     LFHRPL       G  K +GF+ GGLGGG GGG GGGFG
Sbjct: 21  VSAVFVLADRVNVDDKDDKHLLFHRPLLGGGLGHGIYK-KGFKHGGLGGGIGGGAGGGFG 80

Query: 75  GGVGGGFGGGAGGGFGGGAGGGGGLGGGGGLGGGGGLGG--GGGLGGGGGLGGGGGLGGG 134
           GG GGGFGGGAGGGFGGGAG     GG   LGGGGGLGG  GGGLGGGGGLGGG G G G
Sbjct: 81  GGAGGGFGGGAGGGFGGGAG-----GG---LGGGGGLGGGAGGGLGGGGGLGGGAGGGLG 140

Query: 135 GGLGGGGGLGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGG 194
           GG+G GGGLG GI   G   GG+G GGGLGGGGGLGGG G G GGG           GGG
Sbjct: 141 GGIGHGGGLGGGIGHGGGLGGGIGHGGGLGGGGGLGGGAGGGLGGG----------HGGG 200

Query: 195 LGGGGGIGG--GGGLGGGSGLGG--GGGLGGGGGLGG--GGGLGGVGGLGG--GGGLGGG 254
           LGGGGG+GG  GGGLGGG GLGG  GGGLGGGGGLGG  GGGLGG GGLGG  GGGLGGG
Sbjct: 201 LGGGGGLGGGHGGGLGGGGGLGGGHGGGLGGGGGLGGGHGGGLGGGGGLGGGHGGGLGGG 260

Query: 255 VGGGLGGGAGGGLGGGAGGGLGGGAGGGLGVGAGGGLGGGAGGGLGGGAGGGFGGGGGGG 308
            GGGLGGG GGGLGG  GGG+GGGAGGGLG G GGGLGGGAGGGLGGG GGG GGGGG G
Sbjct: 261 AGGGLGGGHGGGLGG--GGGIGGGAGGGLGGGHGGGLGGGAGGGLGGGHGGGLGGGGGLG 313

[Close]
BLAST of Cp4.1LG03g18450.1 vs. TrEMBL
Match: M4DZ60_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 138/178 (77.53%), Postives = 143/178 (80.34%), Query Frame = 1 

Query: 132 HGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIGGG 191
           HGIYK+GF+ G LGGGGGLGGGGGLGGGGGLGGGGG+G G        GGLGGGGG+GGG
Sbjct: 52  HGIYKKGFRKG-LGGGGGLGGGGGLGGGGGLGGGGGLGGG--------GGLGGGGGLGGG 111

Query: 192 GGLGGGSGLGGGGGLGGGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLGGGAGGGLGGGAG 251
           GGLG G GLGGGGGLG GGGLGGGGGLGG GGLGGGGGLGGG  GG+GGGAGGG GGGAG
Sbjct: 112 GGLGHGGGLGGGGGLGHGGGLGGGGGLGGGGGLGGGGGLGGG--GGVGGGAGGGYGGGAG 171

Query: 252 GGLGGGAGGGLGVGAGGGLGGGAGGGLGGGAGGGFGGGGGGGAGFGGGAGFGGGGGHH 310
           GGLGGG G G G G GGG G G GGG GGGAGGGFG G GGG G GGG    GGGGHH
Sbjct: 172 GGLGGGGGAGGGGGFGGGGGYGGGGGFGGGAGGGFGKGIGGGGGLGGGY---GGGGHH 215

[Close]
BLAST of Cp4.1LG03g18450.1 vs. TrEMBL
Match: M4E295_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 157/232 (67.67%), Postives = 163/232 (70.26%), Query Frame = 1 

Query: 26  VEDDKRLFHRPLGFLKGRGFRGGGLGGGFGGGGGGGFGGGVGGGFGGGAGGGFGGGAGGG 85
           V+DDK LFH+P  F   +GFR G LGGG                          GG GGG
Sbjct: 28  VKDDKHLFHKPRPFFHKKGFRKG-LGGG--------------------------GGLGGG 87

Query: 86  GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKSGGLG 145
           GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHG        GGLG
Sbjct: 88  GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHG--------GGLG 147

Query: 146 GGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIGGGGGLGGGSGLGGGGG 205
           GGGGLGGGGGLG GGGLGGGGG+G         GGGLGGGGG+GGGGGLGGG+  GGG G
Sbjct: 148 GGGGLGGGGGLGHGGGLGGGGGVG--------GGGGLGGGGGLGGGGGLGGGA--GGGYG 207

Query: 206 LGGGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLGGGAGGGLGGGAGGGLGGG 258
            G GGGLGGGGG GG GG GGGGG GG  GGG GGGAGG  GGG GGG GGG
Sbjct: 208 GGAGGGLGGGGGAGGGGGFGGGGGYGG--GGGFGGGAGG--GGGFGGGYGGG 210

[Close]
BLAST of Cp4.1LG03g18450.1 vs. TrEMBL
Match: A0A078G3B1_BRANA (BnaA04g18980D protein OS=Brassica napus GN=BnaA04g18980D PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-06
Identity = 136/179 (75.98%), Postives = 141/179 (78.77%), Query Frame = 1 

Query: 132 HGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIGGG 191
           HGIYK+GF+  GLGGGGGLGGGGGLGGGGGLGGGGG+G         GGGLGGGGG+GGG
Sbjct: 52  HGIYKKGFRK-GLGGGGGLGGGGGLGGGGGLGGGGGLG--------GGGGLGGGGGLGGG 111

Query: 192 GGLGGGSGLGGGGGLG-GGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLGGGAGGGLGGGA 251
           GGLG G GLGGGGGLG GGGGLGGGGGLGG GGLGGGGG+GGG GGG GGGAGGGLGG  
Sbjct: 112 GGLGHGGGLGGGGGLGHGGGGLGGGGGLGGGGGLGGGGGVGGGAGGGYGGGAGGGLGG-- 171

Query: 252 GGGLGGGAGGGLGVGAGGGLGGGAGGGLGGGAGGGFGGGGGGGAGFGGGAGFGGGGGHH 310
               GGGAGGG G G GGG GG  GGG GGGAGGGFG G GGG G GGG    GGGGHH
Sbjct: 172 ----GGGAGGGGGFGGGGGYGG--GGGFGGGAGGGFGKGIGGGGGLGGGY---GGGGHH 210

[Close]
BLAST of Cp4.1LG03g18450.1 vs. TAIR10
Match: AT2G32690.1 (AT2G32690.1 glycine-rich protein 23)

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-08
Identity = 132/178 (74.16%), Postives = 135/178 (75.84%), Query Frame = 1 

Query: 132 HGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIGGG 191
           HGIYK+GF  G LGGGGGLGGGGGLGGGGGLGG              GGGLGGGGG+GGG
Sbjct: 52  HGIYKKGFGKG-LGGGGGLGGGGGLGGGGGLGG--------------GGGLGGGGGLGGG 111

Query: 192 GGLGGGSGLGGGGGLGGGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLGGGAGGGLGGGAG 251
           GGLGGGSGLGGGGGLGGG GLGGGGGLGG    GGGGGLGG  GGGLGGGAGGG GGGAG
Sbjct: 112 GGLGGGSGLGGGGGLGGGSGLGGGGGLGG----GGGGGLGG--GGGLGGGAGGGYGGGAG 171

Query: 252 GGLGGGAGGGLGVGAGGGLGGGAGGGLGGGAGGGFGGGGGGGAGFGGGAGFGGGGGHH 310
           GGLGGG     G+G GGG GGG GGG GGGAGGGFG G GGG G GGG     GGGHH
Sbjct: 172 GGLGGGG----GIGGGGGFGGGGGGGFGGGAGGGFGKGIGGGGGLGGGY---VGGGHH 201

[Close]
BLAST of Cp4.1LG03g18450.1 vs. NCBI nr
Match: gi|778688443|ref|XP_011652751.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 5.5e-39
Identity = 249/314 (79.30%), Postives = 253/314 (80.57%), Query Frame = 1 

Query: 1   MASFSLRAVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRG-FRGGGLGGGFGGGGG 60
           MA FSLRAV F  CV IALV ADN VED+K LFHRPLGF KGR  FRGGGLGGG GGGGG
Sbjct: 1   MARFSLRAVVFCFCVLIALVAADNNVEDNKGLFHRPLGFYKGRKRFRGGGLGGGIGGGGG 60

Query: 61  GGFGGGVGGGFGGGAGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLG 120
             FGGG GGG G G GGG GGG G GGG GG      GGGLGGGGGLGGGGGLGGGGGLG
Sbjct: 61  --FGGGAGGGGGLGGGGGLGGGGGFGGGAGG------GGGLGGGGGLGGGGGLGGGGGLG 120

Query: 121 GGGGLGGGGGLGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKG 180
           GGGGLGGGGGLGHGIYKRG+K GGLGGGGGLGGGGGLGGGGGL      GHGIYKRGFK 
Sbjct: 121 GGGGLGGGGGLGHGIYKRGYKRGGLGGGGGLGGGGGLGGGGGL------GHGIYKRGFKR 180

Query: 181 GGLGGGGGIGGGGGLGGGSGLGGGGGLGGGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLG 240
           GGLGGGGG+GGGGGLGGG GLGGGGGLGGGGGLGGGGGLGG GGLGGGGG G G GGGLG
Sbjct: 181 GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGGGFGGGGGLG 240

Query: 241 GGAGGGLGGGAGGGLGGGAGGGL----GVGAGGGLGGGAGGGLGGGAGGGFGGGGGGGAG 300
           GG+GGGLGGG GGG GGGAGGG     G G GGG GGG G G GGG GGG GGG GGG G
Sbjct: 241 GGSGGGLGGGVGGGYGGGAGGGFGGGGGAGGGGGFGGGGGAGGGGGIGGGAGGGYGGGGG 298

Query: 301 FGGGAGFGGGGGHH 310
           FGGG GF  GGGHH
Sbjct: 301 FGGGGGF--GGGHH 298

[Close]
BLAST of Cp4.1LG03g18450.1 vs. NCBI nr
Match: gi|659077739|ref|XP_008439359.1| (PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 166/225 (73.78%), Postives = 172/225 (76.44%), Query Frame = 1 

Query: 1   MASFSLRAVAFWVCVGIALVGADNVVEDDKRLFHRPLGFLKGRG-FRGGGLGGGFGGGGG 60
           MA FSLRAV F  CV IA VGADN VED+K LFHRPLGF+KGR  FRGGGLGGG GGGGG
Sbjct: 1   MACFSLRAVVFCFCVLIAFVGADNNVEDNKGLFHRPLGFIKGRKRFRGGGLGGGIGGGGG 60

Query: 61  GGFGGGVGGGFGGGAGGGFGGGAGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLG 120
             FGGG GGGFGGGAGGGFGGG                GGLGGGGGLGGGGGLGGGGGLG
Sbjct: 61  --FGGGAGGGFGGGAGGGFGGG----------------GGLGGGGGLGGGGGLGGGGGLG 120

Query: 121 GGGGLGGGGGLGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGG-----GGGIGHGIYK 180
           GGGGLGGGGGLGHGI+KRG+K GGLGGGGGLGGGGGLGGGGGLGG     GGG G G   
Sbjct: 121 GGGGLGGGGGLGHGIHKRGYKRGGLGGGGGLGGGGGLGGGGGLGGVGGGYGGGAGGGFGG 180

Query: 181 RGFKGGG--LGGGGGIGGGGGLGGGSG--LGGGGGLGGGGGLGGG 216
            G  GGG   GGGGG GGGGG+GGG+G   GGGGG GGGGG GGG
Sbjct: 181 GGGAGGGGGFGGGGGAGGGGGIGGGAGGGFGGGGGFGGGGGYGGG 207

[Close]
BLAST of Cp4.1LG03g18450.1 vs. NCBI nr
Match: gi|923568584|ref|XP_013739004.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Brassica napus])

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 167/252 (66.27%), Postives = 170/252 (67.46%), Query Frame = 1 

Query: 26  VEDDKRLFHRPLGFLKGRGFRGGGLGGGFGGGGGGGFGGGVGGGFGGGAGGGFGGGAGGG 85
           V+DDK LFH+P  F   +GFR G LGGG                          GG GGG
Sbjct: 28  VKDDKHLFHKPRPFFHKKGFRKG-LGGG--------------------------GGLGGG 87

Query: 86  GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKSGGLG 145
           GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHG        GGLG
Sbjct: 88  GGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGGGGGLGHG--------GGLG 147

Query: 146 GGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIGGGGGLGGGSGLGGGGG 205
           GGGGLGGGGGLG GGGL                          GGGGGLGGG GLG GGG
Sbjct: 148 GGGGLGGGGGLGHGGGL--------------------------GGGGGLGGGGGLGHGGG 207

Query: 206 LGGGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLGGGAGGGLGGGAGGGLGGGAGGGLGVG 265
           LGGGGGLGGGGGLGG GGLGGGGGLGGG GGG GGGAGGGLGGG G G GGG GGG G G
Sbjct: 208 LGGGGGLGGGGGLGGGGGLGGGGGLGGGAGGGYGGGAGGGLGGGGGAGGGGGFGGGGGYG 218

Query: 266 AGGGLGGGAGGG 278
            GGGLGGGAGGG
Sbjct: 268 GGGGLGGGAGGG 218

[Close]
BLAST of Cp4.1LG03g18450.1 vs. NCBI nr
Match: gi|685283915|ref|XP_009132861.1| (PREDICTED: glycine-rich cell wall structural protein-like isoform X1 [Brassica rapa])

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07
Identity = 143/186 (76.88%), Postives = 147/186 (79.03%), Query Frame = 1 

Query: 105 GLGGGGGLGGGGGLGGGGGLGGGGGLGHGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGG 164
           GLGGGGGLGGGGGLGGGGGLGGGGGLG G        GGLGGGGGLGGGGGLGGGGGLGG
Sbjct: 50  GLGGGGGLGGGGGLGGGGGLGGGGGLGGG--------GGLGGGGGLGGGGGLGGGGGLGG 109

Query: 165 GGGIGHGIYKRGFKGGGLGGGGGIGGGGGLGGGSGLGGGGGLGGGGGLGGGGGLGGVGGL 224
           GGG+GH              GGG+GGGGGLGGG GLG GGGLGGGGG+GGGGGLGG GGL
Sbjct: 110 GGGLGH--------------GGGLGGGGGLGGGGGLGHGGGLGGGGGVGGGGGLGGGGGL 169

Query: 225 GGGGGLGGGVGGGLGGGAGGGLGGGAGGGLGGGAGGGLGVGAGGGLGGGAGGGLGGGAGG 284
           GGGGGLGGG GGG GGGAGGGLGGG G G GGG GGG G G GGG GGGAGG  GGG GG
Sbjct: 170 GGGGGLGGGAGGGYGGGAGGGLGGGGGAGGGGGFGGGGGYGGGGGFGGGAGG--GGGFGG 211

Query: 285 GFGGGG 291
           G+GGGG
Sbjct: 230 GYGGGG 211

[Close]
BLAST of Cp4.1LG03g18450.1 vs. NCBI nr
Match: gi|674914086|emb|CDY19158.1| (BnaA04g18980D [Brassica napus])

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-07
Identity = 127/166 (76.51%), Postives = 133/166 (80.12%), Query Frame = 1 

Query: 132 HGIYKRGFKSGGLGGGGGLGGGGGLGGGGGLGGGGGIGHGIYKRGFKGGGLGGGGGIGGG 191
           HGIYK+GF+ G LGGGGGLGGGGGLGGGGGLGGGGG+G G        GGLGGGGG+GGG
Sbjct: 52  HGIYKKGFRKG-LGGGGGLGGGGGLGGGGGLGGGGGLGGG--------GGLGGGGGLGGG 111

Query: 192 GGLGGGSGLGGGGGLG-GGGGLGGGGGLGGVGGLGGGGGLGGGVGGGLGGGAGGGLGGGA 251
           GGLG G GLGGGGGLG GGGGLGGGGGLGG GGLGGGGG+GGG GGG GGGAGGGLGGG 
Sbjct: 112 GGLGHGGGLGGGGGLGHGGGGLGGGGGLGGGGGLGGGGGVGGGAGGGYGGGAGGGLGGGG 171

Query: 252 GGGLGGGAGGGLGVGAGGGLGGGAGGGL------GGGAGGGFGGGG 291
           G G GGG GGG G G GGG GGGAGGG       GGG GGG+GGGG
Sbjct: 172 GAGGGGGFGGGGGYGGGGGFGGGAGGGFGKGIGGGGGLGGGYGGGG 208

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g18450.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g18450.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L443_CUCSA3.8e-3979.30Uncharacterized protein OS=Cucumis sativus GN=Csa_3G131980 PE=4 SV=1[more]
A0A067KT37_JATCU5.0e-0770.38Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01138 PE=4 SV=1[more]
M4DZ60_BRARP1.1e-0677.53Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
M4E295_BRARP1.9e-0667.67Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078G3B1_BRANA3.3e-0675.98BnaA04g18980D protein OS=Brassica napus GN=BnaA04g18980D PE=4 SV=1[more]
BLAST of Cp4.1LG03g18450.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32690.15.3e-0874.16 glycine-rich protein 23[more]
BLAST of Cp4.1LG03g18450.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688443|ref|XP_011652751.1|5.5e-3979.30PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus][more]
gi|659077739|ref|XP_008439359.1|1.7e-2773.78PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo][more]
gi|923568584|ref|XP_013739004.1|2.4e-1066.27PREDICTED: glycine-rich cell wall structural protein 1 [Brassica napus][more]
gi|685283915|ref|XP_009132861.1|2.5e-0776.88PREDICTED: glycine-rich cell wall structural protein-like isoform X1 [Brassica r... [more]
gi|674914086|emb|CDY19158.1|5.5e-0776.51BnaA04g18980D [Brassica napus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG03g18450Cp4.1LG03g18450gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g18450.1:five_prime_utr:001Cp4.1LG03g18450.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g18450.1:cds:001Cp4.1LG03g18450.1:cds:001CDS
Cp4.1LG03g18450.1:cds:002Cp4.1LG03g18450.1:cds:002CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG03g18450.1Cp4.1LG03g18450.1-proteinpolypeptide