Cp4.1LG03g09710.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g09710.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAcidic leucine-rich nuclear phosphoprotein 32-related protein 2
LocationCp4.1LG03 : 11984244 .. 11986016 (-)
Sequence length1308
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATGGAACAAAAGCAAGACAAGATCCGGTGGTAACCGACAGTTTATGAGCAACGAATTTAACGAACACCCGCCACTGCGACCCACAGATGGCTCTTCCCTTCTCCTATCTATCCAATCCCGACCGTCCGATTCCACGCCATTATTCGATATCACTGTTCACCAATCACACCCAAGTAAACGCCTTCCCCTCTGTTTCAGTTAATTGCTTTTTTTCGCGATCTGGACAACTCACCCTTTCATCGGAAGGTCACGATTTGAGTTAAATTTTGGTTCCGTTATGTTATATGTAACCTCCCCCTTTTTTTTTTCTTCAATTTTTCTTTTTGGGTTTTGGAGGGGATTTTATTTTCTTGGGAGTTCTATCTGTTCTTCGTAGCTTTGTTTGGTTAAAGTTTTAGATCGGGGGTTTTACTTTTTTGAGACGGGTTTTTTGTTGGGGTTGCTGGGCTCATAAATTTTGAACCCGTGAGCGTTGACCCAGTTGCGGAATCTCAGTTTTGAGTCGCTGAATTGTGTTCTTATTATATTGGGGGTTTTACAAAAAGTGGATTTCTGAGATGGTTCGATTTAGAAATCCAAAATCTAGGTCGGTTTTTTGGGGTTGTTTATAGGGCAAATTTCCGATTGGATTTATACTGCGAGTTTCAAGGTATGGGCGGCGATTCTAGGGCTGTTAATGGCTACGATGAGAGGTCTGTGGACTCTGCGGCGGCGGGAGAAGTTGGCGATCATAGAAACGGCGAAGATGACAGTGAATCGAATGCTCTATTGCCGCCGCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGACAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGGTAGCTTAATTGTTTTCCCCTTTTCTTGGAGCATTTTGATGGTTTTTTTGGTCTGTTTTCTGTAATTCTGTTCTTGTTCTTGTTCTTACATTTCTGTTGATATTTGAACTTGAGATGTTTGAAGAAGCTGAAAGTTTCCATATCTGGGTTAGAACCAAAAATGCTGGCTGATCTGTTCTTTGGGTTATTCTAGTTCTTCGATTGAAGAACCCAATCTAAACATAGCTCAGTTGATAAAACACTAATGACGAATAGTTAGAACAGGCTTGAATCGAGGGATATGATGCTTGAATGTTTTGTATTGTGACATCATTAGCTGTTTTCATCTTAGACTGAAGTTAAGAACATGTTTTAAGGTAGATGAAATCTGTGTTTGAATGTAATGGATGATGCTGTGGATTGAGTATATCTTTGTTTTTAGATTTGTAAAATTTGGATTGGTTTTTGTGTCTGTTCGTTCTGCAGCGACGTGAGCGATTCCGGGGACGAGGAGTCTGATTCTTGCAGCTGTATGATTATGTAGATTATTACATCAAATATTAGTGTATGACGACGAGAACAATGTCGTTTCTTTACGACGAAACTGATAATAATTGGCAATGTTTCTGACTGTATAACGGATTGCTTTGGTACTACGACGACTGATAGAAGAGTTCAAAGATCGACTGATTAATATGTCGTTTCGTTACGCCTTGTGGTTTCTGGCGATGTGTCGGAGTTGTTTTTCGAATTTGTAAGATCACCTTCCTGGTGATATGATGTATGGATGATGCTGATATTGACATTATGAAATCACAGATTAGTTGAGCTTTTGACAGTGCAGAATGATGTATTATGTAATGCAAACACTTTGGAATTTTTTTTTTTCTATATCTATCATTGTTAATGA

mRNA sequence

TTAATGGAACAAAAGCAAGACAAGATCCGGTGGTAACCGACAGTTTATGAGCAACGAATTTAACGAACACCCGCCACTGCGACCCACAGATGGCTCTTCCCTTCTCCTATCTATCCAATCCCGACCGTCCGATTCCACGCCATTATTCGATATCACTGTTCACCAATCACACCCAAGTAAACGCCTTCCCCTCTGTTTCAGTTAATTGCTTTTTTTCGCGATCTGGACAACTCACCCTTTCATCGGAAGGTCACGATTTGAGTTAAATTTTGGTTCCGTTATGTTATATGTAACCTCCCCCTTTTTTTTTTCTTCAATTTTTCTTTTTGGGTTTTGGAGGGGATTTTATTTTCTTGGGAGTTCTATCTGTTCTTCGTAGCTTTGTTTGGTTAAAGTTTTAGATCGGGGGTTTTACTTTTTTGAGACGGGTTTTTTGTTGGGGTTGCTGGGCTCATAAATTTTGAACCCGTGAGCGTTGACCCAGTTGCGGAATCTCAGTTTTGAGTCGCTGAATTGTGTTCTTATTATATTGGGGGTTTTACAAAAAGTGGATTTCTGAGATGGTTCGATTTAGAAATCCAAAATCTAGGTCGGTTTTTTGGGGTTGTTTATAGGGCAAATTTCCGATTGGATTTATACTGCGAGTTTCAAGGTATGGGCGGCGATTCTAGGGCTGTTAATGGCTACGATGAGAGGTCTGTGGACTCTGCGGCGGCGGGAGAAGTTGGCGATCATAGAAACGGCGAAGATGACAGTGAATCGAATGCTCTATTGCCGCCGCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGACAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGCGACGTGAGCGATTCCGGGGACGAGGAGTCTGATTCTTGCAGCTGTATGATTATGTAGATTATTACATCAAATATTAGTGTATGACGACGAGAACAATGTCGTTTCTTTACGACGAAACTGATAATAATTGGCAATGTTTCTGACTGTATAACGGATTGCTTTGGTACTACGACGACTGATAGAAGAGTTCAAAGATCGACTGATTAATATGTCGTTTCGTTACGCCTTGTGGTTTCTGGCGATGTGTCGGAGTTGTTTTTCGAATTTGTAAGATCACCTTCCTGGTGATATGATGTATGGATGATGCTGATATTGACATTATGAAATCACAGATTAGTTGAGCTTTTGACAGTGCAGAATGATGTATTATGTAATGCAAACACTTTGGAATTTTTTTTTTTCTATATCTATCATTGTTAATGA

Coding sequence (CDS)

ATGGGCGGCGATTCTAGGGCTGTTAATGGCTACGATGAGAGGTCTGTGGACTCTGCGGCGGCGGGAGAAGTTGGCGATCATAGAAACGGCGAAGATGACAGTGAATCGAATGCTCTATTGCCGCCGCGGCGCGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGACAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGCGACGTGAGCGATTCCGGGGACGAGGAGTCTGATTCTTGCAGCTGTATGATTATGTAG

Protein sequence

MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM
Homology
[Close]
BLAST of Cp4.1LG03g09710.1 vs. TrEMBL
Match: A0A0A0L701_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.6e-36
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1 

Query: 3  GDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWND 62
          GDS+ VNG  E+++DSAAAGEVGDH NGE+ SESNALLPPRRGGMSRK NKPRMKVRWND
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
          SNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

[Close]
BLAST of Cp4.1LG03g09710.1 vs. TrEMBL
Match: A0A061EME1_THECC (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cacao GN=TCM_020968 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-22
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 4  DSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDS 63
          D++ VNGY+ + + +  + ++ DH +GE+ SESN+LLPP++GGMSRK  K R KV+WND 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 64 NGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
          NGN L E+LEF+PSDVSDS DE+SDSC C+IM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

[Close]
BLAST of Cp4.1LG03g09710.1 vs. TrEMBL
Match: K7LJ92_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-21
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 4  DSRAVNG--YDERS---VDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKV 63
          DS+ +NG   D+       S    +V DH NGEDDS+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 64 RWNDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
          +WND NGN LAE+LE++PSDVSDS DE+SDSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICAIM 98

[Close]
BLAST of Cp4.1LG03g09710.1 vs. TrEMBL
Match: A0A0B2SPA6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_044611 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.2e-21
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1 

Query: 4  DSRAVNG--YDERS---VDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKV 63
          DS+ +NG   D+       S    +V DH NGEDDS+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSKDINGCLMDKHKPVVTSSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 64 RWNDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
          +WND NGN LAE+LE++PSDVSDS DE+SDSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICAIM 98

[Close]
BLAST of Cp4.1LG03g09710.1 vs. TrEMBL
Match: A0A0B2QZ08_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028738 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-21
Identity = 60/97 (61.86%), Postives = 69/97 (71.13%), Query Frame = 1 

Query: 4  DSRAVNG--YDERS---VDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKV 63
          DS  VNG   D+       S    +V DH NGEDDS+SN+LLPPRRGGMSR   K R KV
Sbjct: 2  DSEDVNGCLMDKHKPVVASSLVCEKVEDHVNGEDDSDSNSLLPPRRGGMSRNCEKTRRKV 61

Query: 64 RWNDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
          +WND NGN LAE+LE++PSDVSDS DE+SDSC C IM
Sbjct: 62 QWNDRNGNKLAEVLEYEPSDVSDSEDEDSDSCICTIM 98

[Close]
BLAST of Cp4.1LG03g09710.1 vs. TAIR10
Match: AT2G33390.1 (AT2G33390.1 unknown protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.8e-19
Identity = 44/93 (47.31%), Postives = 67/93 (72.04%), Query Frame = 1 

Query: 3  GDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWND 62
          G+ +  NG + +++ S  + E+ D    E++SES  LLPPR+GGMSR ++K +  V+WND
Sbjct: 6  GEGKEANGCENKAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWND 65

Query: 63 SNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
            G+NLAE+L ++PS+VSD+ D++SDSC C IM
Sbjct: 66 IKGDNLAEVLVYEPSEVSDTEDDDSDSCICTIM 98

[Close]
BLAST of Cp4.1LG03g09710.1 vs. NCBI nr
Match: gi|449432518|ref|XP_004134046.1| (PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-36
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1 

Query: 3  GDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWND 62
          GDS+ VNG  E+++DSAAAGEVGDH NGE+ SESNALLPPRRGGMSRK NKPRMKVRWND
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
          SNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

[Close]
BLAST of Cp4.1LG03g09710.1 vs. NCBI nr
Match: gi|659076053|ref|XP_008438475.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-34
Identity = 78/91 (85.71%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDS+ VNG  E+++DSAAAGEVGDH NGE+ SESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEESDSCS 92
          NDSNGNNLAEILEFQPSDVSDSGDEE+DSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 91

[Close]
BLAST of Cp4.1LG03g09710.1 vs. NCBI nr
Match: gi|659076051|ref|XP_008438474.1| (PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-26
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 1 

Query: 1  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDS+ VNG  E+++DSAAAGEVGDH NGE+ SESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQP 77
          NDSNGNNLAEILEFQP
Sbjct: 61 NDSNGNNLAEILEFQP 76

[Close]
BLAST of Cp4.1LG03g09710.1 vs. NCBI nr
Match: gi|590659807|ref|XP_007035229.1| (Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao])

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-22
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 1 

Query: 4  DSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDS 63
          D++ VNGY+ + + +  + ++ DH +GE+ SESN+LLPP++GGMSRK  K R KV+WND 
Sbjct: 7  DAKDVNGYNNKILGAIDSPKLEDHADGEEYSESNSLLPPKKGGMSRKPEKTRRKVQWNDK 66

Query: 64 NGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 96
          NGN L E+LEF+PSDVSDS DE+SDSC C+IM
Sbjct: 67 NGNKLVEVLEFEPSDVSDSDDEDSDSCICIIM 98

[Close]
BLAST of Cp4.1LG03g09710.1 vs. NCBI nr
Match: gi|645235204|ref|XP_008224162.1| (PREDICTED: uncharacterized protein LOC103323918 [Prunus mume])

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-21
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 7  AVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGN 66
          A NG      ++  +  V ++ NG++DSESN+LLPPRRGGMSRK+NK R KV+WND NGN
Sbjct: 8  ATNGCKTEKSETTDSQRVEENVNGDEDSESNSLLPPRRGGMSRKTNKTRRKVQWNDKNGN 67

Query: 67 NLAEILEFQPSDVSDSGDEESDSCSCMIM 96
           L E+LEF+PSDVSDS DE++DSC C+IM
Sbjct: 68 KLVEVLEFEPSDVSDSDDEDADSCICIIM 96

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g09710.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g09710.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L701_CUCSA4.6e-3686.02Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134730 PE=4 SV=1[more]
A0A061EME1_THECC2.9e-2258.70Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 OS=Theobroma cac... [more]
K7LJ92_SOYBN3.2e-2160.82Uncharacterized protein OS=Glycine max GN=GLYMA_10G136600 PE=4 SV=1[more]
A0A0B2SPA6_GLYSO3.2e-2160.82Uncharacterized protein OS=Glycine soja GN=glysoja_044611 PE=4 SV=1[more]
A0A0B2QZ08_GLYSO4.2e-2161.86Uncharacterized protein OS=Glycine soja GN=glysoja_028738 PE=4 SV=1[more]
BLAST of Cp4.1LG03g09710.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33390.17.8e-1947.31 unknown protein[more]
BLAST of Cp4.1LG03g09710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432518|ref|XP_004134046.1|6.6e-3686.02PREDICTED: uncharacterized protein LOC101205158 [Cucumis sativus][more]
gi|659076053|ref|XP_008438475.1|4.8e-3485.71PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo][more]
gi|659076051|ref|XP_008438474.1|2.8e-2684.21PREDICTED: uncharacterized protein LOC103483558 isoform X1 [Cucumis melo][more]
gi|590659807|ref|XP_007035229.1|4.2e-2258.70Acidic leucine-rich nuclear phosphoprotein 32-related protein 2 [Theobroma cacao... [more]
gi|645235204|ref|XP_008224162.1|2.7e-2160.67PREDICTED: uncharacterized protein LOC103323918 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG03g09710Cp4.1LG03g09710gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g09710.1:five_prime_utr:001Cp4.1LG03g09710.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g09710.1:cds:001Cp4.1LG03g09710.1:cds:001CDS
Cp4.1LG03g09710.1:cds:002Cp4.1LG03g09710.1:cds:002CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g09710.1:three_prime_utr:001Cp4.1LG03g09710.1:three_prime_utr:001three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG03g09710.1Cp4.1LG03g09710.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401FAMILY NOT NAMEDcoord: 29..95
score: 7.0