Cp4.1LG03g00260.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTCTTCCGCAGAAATGGCTGAAGCGGTCGAAGTGACTCAGGAACTAATCCAGCCTCAATACGACGTGAAGCTTTTCAATCGCTGGACCTTTGATGATGTCCAGGTTTTATTTTTTTTCCCTAATGCCCCGTTTTTTAGACTGATGTTTGTGGGAAGCAATTTTAGGTTAACTTTAAATTTTGCTATAATGGAAGAAGCTATTGATGGATTCACCTCTCACTCATAATGATTTCACAACTTTTTGCTTATCCTTATGATGCGGAGGAGTTGAAAACTGCGATCTGTTCGTATGGTTGTTGGGTTCTTTTTGTTTCCTGTTTGAATTGGGTTGTTAGGTGAAATCTCAATGCCATCGAGTTCCACTGATATGATTGAACGGTTGTGATTATACAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCAGCCAAGCATGCGACCTATGTTCCACACACTGCAGGTCGATATTCCATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTGGAGAGACTTACAAATTCGCTTATGATGCATGGCAGAAACAATGGAAAGAAACTAATGGCTGTGAGGATTATTAAGCATGCGATGGAGATTATTCATCTGCTAACTGATTTGAATCCAATTCAAGTTATTGTTGATGCTGTTGTTAACAGGTATGCATATTGGATCCACGGAATTCCATTCATGTTGTGTTTAAGTTATGTTATACCATCGTAACTTTTAGGTCCAATTACAGATTTGGTATCTATGGTTTAGACAAGGTTTTAATTTAGTCTTTATGGTGTTAAAGATTCAATTTAGTCTCTATGGTTTAGACTTGGTTGCACTTTGGTATCTATGATTTGGGTTTAGTTCTAACTTTTAGTCCTTATGTTCTAAAACTTTCAATAGGATCCTACAATTTAGTCAAACCTCACAAATTGTCCTTGTTACAATGTTGACGAATATTTTCACATGAAAATTGGTAACTGTGTTTGGTTCTAACTTTTAGTGCACGACTTTATTGGACGAAATTCGTGATTTAAATATTGCATCTTGAATCAATGTCCGGAACAAAGATCATGGTAATTCTGCAATTTTTGAGTTTTCAGTTTCCTCTTAACATATTTTTTGACATGGGATTTGGCAGTGGACCCCGTGAAGATGCTACCCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTAAATCAAGCAATATACCTTATTACAACTGGTGCCCGTGAGGCTGCTTTCAGAAACATCAAGACTATTGCTGAATGTTTGGCTGATGAACTCATCAACGCAGCAAAGGGCTCATCAAACAGGTAAACATCATATCTCCTCTTACTAATTTTTCATCCATCCTTGCACCATATTTCATTGTGTTATTCTGTTTTTGCAGTTACGCCATCAAGAAAAAGGATGAGATTGAGAGAGTTGCAAAGGCCAATCGTTAAGCGTAGTTCGACAAAGGAGAGAGAGCTCAAAGGATTCATCAAAAGCTTCATTTTCGGTTCATCATCTAGTTCAAAGTTTCTATGGACATTGTTGTCCTCAATGTTTTGTTTGCCTTATCTTAGCCAGCGAGAATTCATCATATACTTGATTAAGCCTTAATGAGAAGTCTTTATATTTGGTGAGAATCTTTGTCATATGGATATTTGTAATACTTTAATGTTTATTTATGGTTGCTTTTCAAAATTATTACATTAAAACTCCTTATTAGTTGAGCCTCCTC TGTCTTCCGCAGAAATGGCTGAAGCGGTCGAAGTGACTCAGGAACTAATCCAGCCTCAATACGACGTGAAGCTTTTCAATCGCTGGACCTTTGATGATGTCCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCAGCCAAGCATGCGACCTATGTTCCACACACTGCAGGTCGATATTCCATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTGGAGAGACTTACAAATTCGCTTATGATGCATGGCAGAAACAATGGAAAGAAACTAATGGCTGTGAGGATTATTAAGCATGCGATGGAGATTATTCATCTGCTAACTGATTTGAATCCAATTCAAGTTATTGTTGATGCTGTTGTTAACAGTGGACCCCGTGAAGATGCTACCCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTAAATCAAGCAATATACCTTATTACAACTGGTGCCCGTGAGGCTGCTTTCAGAAACATCAAGACTATTGCTGAATGTTTGGCTGATGAACTCATCAACGCAGCAAAGGGCTCATCAAACAGTTACGCCATCAAGAAAAAGGATGAGATTGAGAGAGTTGCAAAGGCCAATCGTTAAGCGTAGTTCGACAAAGGAGAGAGAGCTCAAAGGATTCATCAAAAGCTTCATTTTCGGTTCATCATCTAGTTCAAAGTTTCTATGGACATTGTTGTCCTCAATGTTTTGTTTGCCTTATCTTAGCCAGCGAGAATTCATCATATACTTGATTAAGCCTTAATGAGAAGTCTTTATATTTGGTGAGAATCTTTGTCATATGGATATTTGTAATACTTTAATGTTTATTTATGGTTGCTTTTCAAAATTATTACATTAAAACTCCTTATTAGTTGAGCCTCCTC ATGGCTGAAGCGGTCGAAGTGACTCAGGAACTAATCCAGCCTCAATACGACGTGAAGCTTTTCAATCGCTGGACCTTTGATGATGTCCAGGTTAATGACATGTCTCTGGGGGATTACATTGGAGTTGCACCAGCCAAGCATGCGACCTATGTTCCACACACTGCAGGTCGATATTCCATGAAGCGTTTCAGGAAAGCTCAATGCCCAATTGTGGAGAGACTTACAAATTCGCTTATGATGCATGGCAGAAACAATGGAAAGAAACTAATGGCTGTGAGGATTATTAAGCATGCGATGGAGATTATTCATCTGCTAACTGATTTGAATCCAATTCAAGTTATTGTTGATGCTGTTGTTAACAGTGGACCCCGTGAAGATGCTACCCGAATTGGTTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTCTGCGACGTGTAAATCAAGCAATATACCTTATTACAACTGGTGCCCGTGAGGCTGCTTTCAGAAACATCAAGACTATTGCTGAATGTTTGGCTGATGAACTCATCAACGCAGCAAAGGGCTCATCAAACAGTTACGCCATCAAGAAAAAGGATGAGATTGAGAGAGTTGCAAAGGCCAATCGTTAA MAEAVEVTQELIQPQYDVKLFNRWTFDDVQVNDMSLGDYIGVAPAKHATYVPHTAGRYSMKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
BLAST of Cp4.1LG03g00260.1 vs. Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 3.3e-96 Identity = 179/192 (93.23%), Postives = 188/192 (97.92%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1) HSP 1 Score: 350.9 bits (899), Expect = 9.5e-96 Identity = 179/207 (86.47%), Postives = 194/207 (93.72%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2) HSP 1 Score: 350.1 bits (897), Expect = 1.6e-95 Identity = 181/207 (87.44%), Postives = 193/207 (93.24%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3) HSP 1 Score: 307.8 bits (787), Expect = 9.2e-83 Identity = 152/190 (80.00%), Postives = 174/190 (91.58%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4) HSP 1 Score: 307.8 bits (787), Expect = 9.2e-83 Identity = 152/190 (80.00%), Postives = 174/190 (91.58%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TrEMBL
Match: A0A0A0KSZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G292230 PE=3 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 1.4e-101 Identity = 191/200 (95.50%), Postives = 197/200 (98.50%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TrEMBL
Match: A0A0A0K5K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232530 PE=3 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 4.4e-100 Identity = 189/200 (94.50%), Postives = 195/200 (97.50%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TrEMBL
Match: A0A0A0LVI4_CUCSA (40S ribosomal protein S5 OS=Cucumis sativus GN=Csa_1G168900 PE=4 SV=1) HSP 1 Score: 370.5 bits (950), Expect = 1.3e-99 Identity = 192/207 (92.75%), Postives = 199/207 (96.14%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TrEMBL
Match: A0A0A0LRZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373440 PE=3 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 2.9e-99 Identity = 188/200 (94.00%), Postives = 194/200 (97.00%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TrEMBL
Match: W9RQK6_9ROSA (40S ribosomal protein S5 OS=Morus notabilis GN=L484_012437 PE=3 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 3.2e-98 Identity = 184/198 (92.93%), Postives = 193/198 (97.47%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B) HSP 1 Score: 350.9 bits (899), Expect = 5.3e-97 Identity = 179/207 (86.47%), Postives = 194/207 (93.72%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TAIR10
Match: AT3G11940.1 (AT3G11940.1 ribosomal protein 5A) HSP 1 Score: 350.1 bits (897), Expect = 9.1e-97 Identity = 181/207 (87.44%), Postives = 193/207 (93.24%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7) HSP 1 Score: 55.1 bits (131), Expect = 6.1e-08 Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein) HSP 1 Score: 55.1 bits (131), Expect = 6.1e-08 Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. NCBI nr
Match: gi|449445316|ref|XP_004140419.1| (PREDICTED: 40S ribosomal protein S5 [Cucumis sativus]) HSP 1 Score: 377.1 bits (967), Expect = 2.0e-101 Identity = 191/200 (95.50%), Postives = 197/200 (98.50%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. NCBI nr
Match: gi|659092671|ref|XP_008447165.1| (PREDICTED: 40S ribosomal protein S5-like isoform X2 [Cucumis melo]) HSP 1 Score: 375.9 bits (964), Expect = 4.4e-101 Identity = 192/200 (96.00%), Postives = 196/200 (98.00%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. NCBI nr
Match: gi|659114009|ref|XP_008456864.1| (PREDICTED: 40S ribosomal protein S5-like [Cucumis melo]) HSP 1 Score: 375.9 bits (964), Expect = 4.4e-101 Identity = 192/200 (96.00%), Postives = 196/200 (98.00%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. NCBI nr
Match: gi|659092669|ref|XP_008447164.1| (PREDICTED: 40S ribosomal protein S5-like isoform X1 [Cucumis melo]) HSP 1 Score: 375.9 bits (964), Expect = 4.4e-101 Identity = 192/200 (96.00%), Postives = 196/200 (98.00%), Query Frame = 1
BLAST of Cp4.1LG03g00260.1 vs. NCBI nr
Match: gi|659127319|ref|XP_008463640.1| (PREDICTED: 40S ribosomal protein S5 [Cucumis melo]) HSP 1 Score: 373.2 bits (957), Expect = 2.8e-100 Identity = 194/207 (93.72%), Postives = 200/207 (96.62%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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