Cp4.1LG02g07850.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g07850.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP-4 complex subunit mu-1
LocationCp4.1LG02 : 532651 .. 532936 (+)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCATTAATCTTATTGTTACTAATAGGCGTTACATGGCAGATTGTTGGTGGATCTGAACATACTTTGCGTGCAAGGCTCACATTTTCACAAGAATCACATGGTAAATTTTGTACATTGACGAACAAGATATTTTTCTTAGGAAATAAATATATGAATTAAAAATATATTTTCTATGGCAGGAAACATCGTGAAAGAATCTGGACCTGTTAGTATGACCTTCACAATTCCAATGTACAACGCTTCAAAACTCCAGGCATGTTATCTGAACAGAATCGAGTAA

mRNA sequence

ATGTCTGCATTAATCTTATTGTTACTAATAGGCGTTACATGGCAGATTGTTGGTGGATCTGAACATACTTTGCGTGCAAGGCTCACATTTTCACAAGAATCACATGGAAACATCGTGAAAGAATCTGGACCTGTTAGTATGACCTTCACAATTCCAATGTACAACGCTTCAAAACTCCAGGCATGTTATCTGAACAGAATCGAGTAA

Coding sequence (CDS)

ATGTCTGCATTAATCTTATTGTTACTAATAGGCGTTACATGGCAGATTGTTGGTGGATCTGAACATACTTTGCGTGCAAGGCTCACATTTTCACAAGAATCACATGGAAACATCGTGAAAGAATCTGGACCTGTTAGTATGACCTTCACAATTCCAATGTACAACGCTTCAAAACTCCAGGCATGTTATCTGAACAGAATCGAGTAA

Protein sequence

MSALILLLLIGVTWQIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYLNRIE
Homology
[Close]
BLAST of Cp4.1LG02g07850.1 vs. Swiss-Prot
Match: AP4M_ARATH (AP-4 complex subunit mu OS=Arabidopsis thaliana GN=AP4M PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-17
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGG EHTLRA+LTFSQE HGNI KE+GPVSMTFTIPMYN SKLQ  YL
Sbjct: 374 KIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850.1 vs. TrEMBL
Match: W9SLX5_9ROSA (AP-4 complex subunit mu-1 OS=Morus notabilis GN=L484_007705 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.1e-18
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           QIVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 396 QIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 445

[Close]
BLAST of Cp4.1LG02g07850.1 vs. TrEMBL
Match: A0A0A0LGF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860300 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.5e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNIVKE+GPVSMTFTIPMYNAS+LQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850.1 vs. TrEMBL
Match: A0A166AK15_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010138 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRA+LTFSQESHGNI KE+GPVSMTFTIPMYNASKLQ  YL
Sbjct: 393 KIVGGSEHTLRAKLTFSQESHGNITKEAGPVSMTFTIPMYNASKLQVKYL 442

[Close]
BLAST of Cp4.1LG02g07850.1 vs. TrEMBL
Match: V4TBS4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001124mg PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-16
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRA+LTFSQESHGNI KE GPV+MTFTIPMYNASKLQ  YL
Sbjct: 374 KIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850.1 vs. TrEMBL
Match: A0A067H0R9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013029mg PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-16
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRA+LTFSQESHGNI KE GPV+MTFTIPMYNASKLQ  YL
Sbjct: 374 KIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850.1 vs. TAIR10
Match: AT4G24550.2 (AT4G24550.2 Clathrin adaptor complexes medium subunit family protein)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-18
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGG EHTLRA+LTFSQE HGNI KE+GPVSMTFTIPMYN SKLQ  YL
Sbjct: 374 KIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850.1 vs. NCBI nr
Match: gi|703142162|ref|XP_010107686.1| (AP-4 complex subunit mu-1 [Morus notabilis])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           QIVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 396 QIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 445

[Close]
BLAST of Cp4.1LG02g07850.1 vs. NCBI nr
Match: gi|1009137252|ref|XP_015885953.1| (PREDICTED: AP-4 complex subunit mu isoform X1 [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850.1 vs. NCBI nr
Match: gi|1009137254|ref|XP_015885954.1| (PREDICTED: AP-4 complex subunit mu isoform X2 [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 368 KIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 417

[Close]
BLAST of Cp4.1LG02g07850.1 vs. NCBI nr
Match: gi|778686673|ref|XP_004147850.2| (PREDICTED: AP-4 complex subunit mu [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNIVKE+GPVSMTFTIPMYNAS+LQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850.1 vs. NCBI nr
Match: gi|659133044|ref|XP_008466524.1| (PREDICTED: AP-4 complex subunit mu [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNIVKE+GPVSMTFTIPMYNAS+LQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLQVKYL 423

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g07850.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AP4M_ARATH4.9e-1782.00AP-4 complex subunit mu OS=Arabidopsis thaliana GN=AP4M PE=2 SV=1[more]
BLAST of Cp4.1LG02g07850.1 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SLX5_9ROSA9.1e-1894.00AP-4 complex subunit mu-1 OS=Morus notabilis GN=L484_007705 PE=3 SV=1[more]
A0A0A0LGF2_CUCSA4.5e-1790.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860300 PE=3 SV=1[more]
A0A166AK15_DAUCA1.3e-1688.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010138 PE=4 SV=1[more]
V4TBS4_9ROSI6.5e-1686.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001124mg PE=3 SV=1[more]
A0A067H0R9_CITSI6.5e-1686.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013029mg PE=3 SV=1[more]
BLAST of Cp4.1LG02g07850.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24550.22.8e-1882.00 Clathrin adaptor complexes medium subunit family protein[more]
BLAST of Cp4.1LG02g07850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703142162|ref|XP_010107686.1|1.3e-1794.00AP-4 complex subunit mu-1 [Morus notabilis][more]
gi|1009137252|ref|XP_015885953.1|3.8e-1792.00PREDICTED: AP-4 complex subunit mu isoform X1 [Ziziphus jujuba][more]
gi|1009137254|ref|XP_015885954.1|3.8e-1792.00PREDICTED: AP-4 complex subunit mu isoform X2 [Ziziphus jujuba][more]
gi|778686673|ref|XP_004147850.2|6.5e-1790.00PREDICTED: AP-4 complex subunit mu [Cucumis sativus][more]
gi|659133044|ref|XP_008466524.1|6.5e-1790.00PREDICTED: AP-4 complex subunit mu [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG02g07850Cp4.1LG02g07850gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG02g07850.1:cds:002Cp4.1LG02g07850.1:cds:002CDS
Cp4.1LG02g07850.1:cds:001Cp4.1LG02g07850.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG02g07850.1Cp4.1LG02g07850.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.60.40.1170coord: 15..55
score: 1.