Cp4.1LG02g07850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g07850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP-4 complex subunit mu-1
LocationCp4.1LG02 : 532651 .. 532936 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCATTAATCTTATTGTTACTAATAGGCGTTACATGGCAGATTGTTGGTGGATCTGAACATACTTTGCGTGCAAGGCTCACATTTTCACAAGAATCACATGGTAAATTTTGTACATTGACGAACAAGATATTTTTCTTAGGAAATAAATATATGAATTAAAAATATATTTTCTATGGCAGGAAACATCGTGAAAGAATCTGGACCTGTTAGTATGACCTTCACAATTCCAATGTACAACGCTTCAAAACTCCAGGCATGTTATCTGAACAGAATCGAGTAA

mRNA sequence

ATGTCTGCATTAATCTTATTGTTACTAATAGGCGTTACATGGCAGATTGTTGGTGGATCTGAACATACTTTGCGTGCAAGGCTCACATTTTCACAAGAATCACATGGAAACATCGTGAAAGAATCTGGACCTGTTAGTATGACCTTCACAATTCCAATGTACAACGCTTCAAAACTCCAGGCATGTTATCTGAACAGAATCGAGTAA

Coding sequence (CDS)

ATGTCTGCATTAATCTTATTGTTACTAATAGGCGTTACATGGCAGATTGTTGGTGGATCTGAACATACTTTGCGTGCAAGGCTCACATTTTCACAAGAATCACATGGAAACATCGTGAAAGAATCTGGACCTGTTAGTATGACCTTCACAATTCCAATGTACAACGCTTCAAAACTCCAGGCATGTTATCTGAACAGAATCGAGTAA

Protein sequence

MSALILLLLIGVTWQIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYLNRIE
Homology
[Close]
BLAST of Cp4.1LG02g07850 vs. Swiss-Prot
Match: AP4M_ARATH (AP-4 complex subunit mu OS=Arabidopsis thaliana GN=AP4M PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-17
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGG EHTLRA+LTFSQE HGNI KE+GPVSMTFTIPMYN SKLQ  YL
Sbjct: 374 KIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850 vs. TrEMBL
Match: W9SLX5_9ROSA (AP-4 complex subunit mu-1 OS=Morus notabilis GN=L484_007705 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.1e-18
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           QIVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 396 QIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 445

[Close]
BLAST of Cp4.1LG02g07850 vs. TrEMBL
Match: A0A0A0LGF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860300 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.5e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNIVKE+GPVSMTFTIPMYNAS+LQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850 vs. TrEMBL
Match: A0A166AK15_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010138 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRA+LTFSQESHGNI KE+GPVSMTFTIPMYNASKLQ  YL
Sbjct: 393 KIVGGSEHTLRAKLTFSQESHGNITKEAGPVSMTFTIPMYNASKLQVKYL 442

[Close]
BLAST of Cp4.1LG02g07850 vs. TrEMBL
Match: V4TBS4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001124mg PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-16
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRA+LTFSQESHGNI KE GPV+MTFTIPMYNASKLQ  YL
Sbjct: 374 KIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850 vs. TrEMBL
Match: A0A067H0R9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013029mg PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-16
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRA+LTFSQESHGNI KE GPV+MTFTIPMYNASKLQ  YL
Sbjct: 374 KIVGGSEHTLRAKLTFSQESHGNITKEVGPVNMTFTIPMYNASKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850 vs. TAIR10
Match: AT4G24550.2 (AT4G24550.2 Clathrin adaptor complexes medium subunit family protein)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-18
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGG EHTLRA+LTFSQE HGNI KE+GPVSMTFTIPMYN SKLQ  YL
Sbjct: 374 KIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850 vs. NCBI nr
Match: gi|703142162|ref|XP_010107686.1| (AP-4 complex subunit mu-1 [Morus notabilis])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           QIVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 396 QIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 445

[Close]
BLAST of Cp4.1LG02g07850 vs. NCBI nr
Match: gi|1009137252|ref|XP_015885953.1| (PREDICTED: AP-4 complex subunit mu isoform X1 [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850 vs. NCBI nr
Match: gi|1009137254|ref|XP_015885954.1| (PREDICTED: AP-4 complex subunit mu isoform X2 [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNI KESGPVSMTFTIPMYNASKLQ  YL
Sbjct: 368 KIVGGSEHTLRARLTFSQESHGNITKESGPVSMTFTIPMYNASKLQVKYL 417

[Close]
BLAST of Cp4.1LG02g07850 vs. NCBI nr
Match: gi|778686673|ref|XP_004147850.2| (PREDICTED: AP-4 complex subunit mu [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNIVKE+GPVSMTFTIPMYNAS+LQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLQVKYL 423

[Close]
BLAST of Cp4.1LG02g07850 vs. NCBI nr
Match: gi|659133044|ref|XP_008466524.1| (PREDICTED: AP-4 complex subunit mu [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 15  QIVGGSEHTLRARLTFSQESHGNIVKESGPVSMTFTIPMYNASKLQACYL 65
           +IVGGSEHTLRARLTFSQESHGNIVKE+GPVSMTFTIPMYNAS+LQ  YL
Sbjct: 374 KIVGGSEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLQVKYL 423

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g07850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AP4M_ARATH4.9e-1782.00AP-4 complex subunit mu OS=Arabidopsis thaliana GN=AP4M PE=2 SV=1[more]
BLAST of Cp4.1LG02g07850 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SLX5_9ROSA9.1e-1894.00AP-4 complex subunit mu-1 OS=Morus notabilis GN=L484_007705 PE=3 SV=1[more]
A0A0A0LGF2_CUCSA4.5e-1790.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860300 PE=3 SV=1[more]
A0A166AK15_DAUCA1.3e-1688.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010138 PE=4 SV=1[more]
V4TBS4_9ROSI6.5e-1686.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001124mg PE=3 SV=1[more]
A0A067H0R9_CITSI6.5e-1686.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013029mg PE=3 SV=1[more]
BLAST of Cp4.1LG02g07850 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G24550.22.8e-1882.00 Clathrin adaptor complexes medium subunit family protein[more]
BLAST of Cp4.1LG02g07850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703142162|ref|XP_010107686.1|1.3e-1794.00AP-4 complex subunit mu-1 [Morus notabilis][more]
gi|1009137252|ref|XP_015885953.1|3.8e-1792.00PREDICTED: AP-4 complex subunit mu isoform X1 [Ziziphus jujuba][more]
gi|1009137254|ref|XP_015885954.1|3.8e-1792.00PREDICTED: AP-4 complex subunit mu isoform X2 [Ziziphus jujuba][more]
gi|778686673|ref|XP_004147850.2|6.5e-1790.00PREDICTED: AP-4 complex subunit mu [Cucumis sativus][more]
gi|659133044|ref|XP_008466524.1|6.5e-1790.00PREDICTED: AP-4 complex subunit mu [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g07850.1Cp4.1LG02g07850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.60.40.1170coord: 15..55
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g07850Silver-seed gourdcarcpeB0153
Cp4.1LG02g07850Silver-seed gourdcarcpeB0265
Cp4.1LG02g07850Silver-seed gourdcarcpeB0566
Cp4.1LG02g07850Silver-seed gourdcarcpeB1066
Cp4.1LG02g07850Silver-seed gourdcarcpeB1309
Cp4.1LG02g07850Silver-seed gourdcarcpeB1362
Cp4.1LG02g07850Cucumber (Chinese Long) v3cpecucB0680
Cp4.1LG02g07850Cucumber (Chinese Long) v3cpecucB0693
Cp4.1LG02g07850Cucumber (Chinese Long) v3cpecucB0724
Cp4.1LG02g07850Wax gourdcpewgoB0694
Cp4.1LG02g07850Wax gourdcpewgoB0729
Cp4.1LG02g07850Cucurbita pepo (Zucchini)cpecpeB091
Cp4.1LG02g07850Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g07850Cucurbita pepo (Zucchini)cpecpeB301
Cp4.1LG02g07850Cucurbita pepo (Zucchini)cpecpeB415
Cp4.1LG02g07850Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG02g07850Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g07850Cucumber (Gy14) v1cgycpeB0042
Cp4.1LG02g07850Cucumber (Gy14) v1cgycpeB0612
Cp4.1LG02g07850Cucumber (Gy14) v1cgycpeB0885
Cp4.1LG02g07850Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g07850Cucurbita maxima (Rimu)cmacpeB190
Cp4.1LG02g07850Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g07850Cucurbita maxima (Rimu)cmacpeB570
Cp4.1LG02g07850Cucurbita maxima (Rimu)cmacpeB678
Cp4.1LG02g07850Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g07850Cucurbita maxima (Rimu)cmacpeB882
Cp4.1LG02g07850Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g07850Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g07850Cucurbita moschata (Rifu)cmocpeB450
Cp4.1LG02g07850Cucurbita moschata (Rifu)cmocpeB521
Cp4.1LG02g07850Cucurbita moschata (Rifu)cmocpeB632
Cp4.1LG02g07850Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g07850Cucurbita moschata (Rifu)cmocpeB819
Cp4.1LG02g07850Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g07850Wild cucumber (PI 183967)cpecpiB542
Cp4.1LG02g07850Wild cucumber (PI 183967)cpecpiB586
Cp4.1LG02g07850Wild cucumber (PI 183967)cpecpiB558
Cp4.1LG02g07850Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g07850Cucumber (Chinese Long) v2cpecuB540
Cp4.1LG02g07850Cucumber (Chinese Long) v2cpecuB556
Cp4.1LG02g07850Cucumber (Chinese Long) v2cpecuB585
Cp4.1LG02g07850Bottle gourd (USVL1VR-Ls)cpelsiB436
Cp4.1LG02g07850Bottle gourd (USVL1VR-Ls)cpelsiB439
Cp4.1LG02g07850Bottle gourd (USVL1VR-Ls)cpelsiB462
Cp4.1LG02g07850Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g07850Watermelon (Charleston Gray)cpewcgB497
Cp4.1LG02g07850Watermelon (Charleston Gray)cpewcgB509
Cp4.1LG02g07850Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g07850Watermelon (97103) v1cpewmB541
Cp4.1LG02g07850Watermelon (97103) v1cpewmB559
Cp4.1LG02g07850Watermelon (97103) v1cpewmB577
Cp4.1LG02g07850Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g07850Melon (DHL92) v3.5.1cpemeB516
Cp4.1LG02g07850Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g07850Cucumber (Gy14) v2cgybcpeB226
Cp4.1LG02g07850Cucumber (Gy14) v2cgybcpeB387
Cp4.1LG02g07850Cucumber (Gy14) v2cgybcpeB823
Cp4.1LG02g07850Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g07850Melon (DHL92) v3.6.1cpemedB614
Cp4.1LG02g07850Melon (DHL92) v3.6.1cpemedB649