Cp4.1LG01g21210.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g21210.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 17939712 .. 17941086 (+)
Sequence length881
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAATTCTTAAAAACAGAGAATCACTGTTCATACTTCGGCCGCGCGTTTAAATTCCTTACAACAAACATCGGCGAGGAATTGGAATCAAAATCAACAGCCTCTGTTTTTTTTTTTTTTTTTTTTTTTNTTTGCATGTGCTTGTTCAAGGTGGCGAATCGGCGAGGAATTGGAGGTGACTTGGGACCGTTTCCAAGTGGCGGCGGCGATGGCGACGGTGATAACGGCAAAAAGTTATTCTACAGTCAAGAAAATGACGGCGATTATTATTCCGCTGTCGGAGAGGTGTCGGCGATGGTGTCGGTGTTAACCGATGTGGTGTCTGGGGTGGGGGCAGCCGACTCAAACTACAGCGGCGGGCAGGTTTTTTCGTCTTCATCGTCAACGTCGACTTCTTCGCCGCTGTCGAGTTTCTCGTCGGAACCGAGCTATGTGTCGGCGATGAGTTCTTGGGTTGGGCAGAAACGACTACGTGAAGGAGAAAATGCAGAAACAGAGCGTAATTTTGATTCTCTTTCGCGGGTTTTTAATGGACAATCTTCCTCCGCCGTAATTACTGCAGGTTCGTAACAGAGCCGAGCTTGAAATTTTAATTTAATTATATTTGGATTTTAAAATTTTAGAAAATAAATGTGGAAGAGAAAATTAAGCAATGGAACAGTACAAGAAATTAATCTGGATTTTTTTTTTGTGTAGTGAAAGAAGAAATTCCAATTCCGTACACCGGAATTTCAAATCCCGGCACCGCCGTTGCGGCGTCTCCAATGAGCGAGACGGCGGCGGCTACGGCTGTTAGCGATAGAAGAAGAAGATACAGAGGAGTACGGCAGCGGCCATGGGGGAAATGGGCGGCGGAGATTCGTGATCCGCATAAGGCGGCTAGAGTTTGGCTCGGGACGTTCGACACGGCGGAGGCTGCCGCTCTAGCATACGACGAAGCTGCCCTCCGATTCAGAGGAAACAAAGCGAAACTCAATTTCCCTGAAAATGTCGGGTTACTTCCTCCGCAGCAGCAGCACATTCCGATATCCAGCCCCCAATTTGTTCCGCCACGGACGGCGGCGCTTCAGATACAGAATTACCGGGATTACATGGAATATTCCAATTTTCTTCAAAGCTCCGGCGACTTCCTTGGACAACCTTCGAGTTTACTGCAGCAAATGTATTATAATGCGCAGTTGACTCCGTTTCAATATTTGCCGGCGCCAGCGCCGTCGTTGTCCTCTGTTTCAAATTCTGTTTTTATTCCGCCGCAGCAGCAGCAGCAACAAATGGGGTTATTCCGGCCGCCGCGGTCGCAAAATCAAAACCAGGATGGCTCCGATTGCTTCCCCGGTACGTCGTGGAATGATTCCGGTGCTCCATCATCCGGCTGA

mRNA sequence

TCTAATTCTTAAAAACAGAGAATCACTGTTCATACTTCGGCCGCGCGTTTAAATTCCTTACAACAAACATCGGCGAGGAATTGGAATCAAAATCAACAGCCTCTGTTTTTTTTTTTTTTTTTTTTTTTNTTTGCATGTGCTTGTTCAAGGTGGCGAATCGGCGAGGAATTGGAGGTGACTTGGGACCGTTTCCAAGTGGCGGCGGCGATGGCGACGGTGATAACGGCAAAAAGTTATTCTACAGTCAAGAAAATGACGGCGATTATTATTCCGCTGTCGGAGAGGTGTCGGCGATGGTGTCGGTGTTAACCGATGTGGTGTCTGGGGTGGGGGCAGCCGACTCAAACTACAGCGGCGGGCAGGTTTTTTCGTCTTCATCGTCAACGTCGACTTCTTCGCCGCTGTCGAGTTTCTCGTCGGAACCGAGCTATGTGTCGGCGATGAGTTCTTGGGTTGGGCAGAAACGACTACGTGAAGGAGAAAATGCAGAAACAGAGCGTAATTTTGATTCTCTTTCGCGGGTTTTTAATGGACAATCTTCCTCCGCCGTAATTACTGCAGTGAAAGAAGAAATTCCAATTCCGTACACCGGAATTTCAAATCCCGGCACCGCCGTTGCGGCCTCCGGCGACTTCCTTGGACAACCTTCGAGTTTACTGCAGCAAATGTATTATAATGCGCAGTTGACTCCGTTTCAATATTTGCCGGCGCCAGCGCCGTCGTTGTCCTCTGTTTCAAATTCTGTTTTTATTCCGCCGCAGCAGCAGCAGCAACAAATGGGGTTATTCCGGCCGCCGCGGTCGCAAAATCAAAACCAGGATGGCTCCGATTGCTTCCCCGGTACGTCGTGGAATGATTCCGGTGCTCCATCATCCGGCTGA

Coding sequence (CDS)

ATGTGCTTGTTCAAGGTGGCGAATCGGCGAGGAATTGGAGGTGACTTGGGACCGTTTCCAAGTGGCGGCGGCGATGGCGACGGTGATAACGGCAAAAAGTTATTCTACAGTCAAGAAAATGACGGCGATTATTATTCCGCTGTCGGAGAGGTGTCGGCGATGGTGTCGGTGTTAACCGATGTGGTGTCTGGGGTGGGGGCAGCCGACTCAAACTACAGCGGCGGGCAGGTTTTTTCGTCTTCATCGTCAACGTCGACTTCTTCGCCGCTGTCGAGTTTCTCGTCGGAACCGAGCTATGTGTCGGCGATGAGTTCTTGGGTTGGGCAGAAACGACTACGTGAAGGAGAAAATGCAGAAACAGAGCGTAATTTTGATTCTCTTTCGCGGGTTTTTAATGGACAATCTTCCTCCGCCGTAATTACTGCAGTGAAAGAAGAAATTCCAATTCCGTACACCGGAATTTCAAATCCCGGCACCGCCGTTGCGGCCTCCGGCGACTTCCTTGGACAACCTTCGAGTTTACTGCAGCAAATGTATTATAATGCGCAGTTGACTCCGTTTCAATATTTGCCGGCGCCAGCGCCGTCGTTGTCCTCTGTTTCAAATTCTGTTTTTATTCCGCCGCAGCAGCAGCAGCAACAAATGGGGTTATTCCGGCCGCCGCGGTCGCAAAATCAAAACCAGGATGGCTCCGATTGCTTCCCCGGTACGTCGTGGAATGATTCCGGTGCTCCATCATCCGGCTGA

Protein sequence

MCLFKVANRRGIGGDLGPFPSGGGDGDGDNGKKLFYSQENDGDYYSAVGEVSAMVSVLTDVVSGVGAADSNYSGGQVFSSSSSTSTSSPLSSFSSEPSYVSAMSSWVGQKRLREGENAETERNFDSLSRVFNGQSSSAVITAVKEEIPIPYTGISNPGTAVAASGDFLGQPSSLLQQMYYNAQLTPFQYLPAPAPSLSSVSNSVFIPPQQQQQQMGLFRPPRSQNQNQDGSDCFPGTSWNDSGAPSSG
Homology
[Close]
BLAST of Cp4.1LG01g21210.1 vs. TrEMBL
Match: A0A0A0KBA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055940 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.4e-29
Identity = 101/197 (51.27%), Postives = 118/197 (59.90%), Query Frame = 1 

Query: 1   MCLFKVANRRGIGGDLGPFPSGG-GDGDGDNG-------------KKLFYSQENDGDYYS 60
           MC  KVANRRGIG DL  FPSGG GDGDGD G              +L Y Q +DGDYYS
Sbjct: 1   MCSLKVANRRGIGSDLAQFPSGGAGDGDGDTGGGGGGGSSSSDDPHRLLYGQRDDGDYYS 60

Query: 61  AVGEVSAMVSVLTDVVSGVGAADSNYSGGQVF-------SSSSSTSTSSPLSSFSSEPSY 120
           AVGEVS +VS LT+V+SG  A D  Y  GQ F       SSSSS+ST+S   S  SE SY
Sbjct: 61  AVGEVSTIVSTLTNVMSGQAAPDWGYGRGQGFPRGFVSSSSSSSSSTTSASGSSGSELSY 120

Query: 121 VSAMSS-WVGQKRLREGE-NAETERNFDSLSRVFN---------GQSSSAVITAVKEEI- 165
           V  MSS WVGQKR+RE E + +T+ +F S SR F+          Q  S+ I  VKEE+ 
Sbjct: 121 VPGMSSYWVGQKRMREEEISVQTQHDFHSASRGFSFIRGFDHHFSQPQSS-IPPVKEEVP 180

[Close]
BLAST of Cp4.1LG01g21210.1 vs. NCBI nr
Match: gi|449446496|ref|XP_004141007.1| (PREDICTED: ethylene-responsive transcription factor ABR1-like [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 9.2e-29
Identity = 101/197 (51.27%), Postives = 118/197 (59.90%), Query Frame = 1 

Query: 1   MCLFKVANRRGIGGDLGPFPSGG-GDGDGDNG-------------KKLFYSQENDGDYYS 60
           MC  KVANRRGIG DL  FPSGG GDGDGD G              +L Y Q +DGDYYS
Sbjct: 1   MCSLKVANRRGIGSDLAQFPSGGAGDGDGDTGGGGGGGSSSSDDPHRLLYGQRDDGDYYS 60

Query: 61  AVGEVSAMVSVLTDVVSGVGAADSNYSGGQVF-------SSSSSTSTSSPLSSFSSEPSY 120
           AVGEVS +VS LT+V+SG  A D  Y  GQ F       SSSSS+ST+S   S  SE SY
Sbjct: 61  AVGEVSTIVSTLTNVMSGQAAPDWGYGRGQGFPRGFVSSSSSSSSSTTSASGSSGSELSY 120

Query: 121 VSAMSS-WVGQKRLREGE-NAETERNFDSLSRVFN---------GQSSSAVITAVKEEI- 165
           V  MSS WVGQKR+RE E + +T+ +F S SR F+          Q  S+ I  VKEE+ 
Sbjct: 121 VPGMSSYWVGQKRMREEEISVQTQHDFHSASRGFSFIRGFDHHFSQPQSS-IPPVKEEVP 180

[Close]
BLAST of Cp4.1LG01g21210.1 vs. NCBI nr
Match: gi|659081765|ref|XP_008441501.1| (PREDICTED: ethylene-responsive transcription factor ERF113-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 63/88 (71.59%), Postives = 68/88 (77.27%), Query Frame = 1 

Query: 164 SGDFLGQPSSLLQQMYYNAQLTPFQYL--PAPAPSLSSVSNSVFIPPQQQQQQMGLFRPP 223
           SGD L QPSSLLQQM+YNAQL PF+    PAPAPS+SSVSNSVF  P  QQQQMG+FR P
Sbjct: 195 SGDILRQPSSLLQQMFYNAQLPPFESSSSPAPAPSMSSVSNSVFFNPTLQQQQMGIFR-P 254

Query: 224 RSQNQNQDGSDCFPGTSWNDSGA--PSS 248
             QNQNQ GSD FP TSW+DSG   PSS
Sbjct: 255 SPQNQNQGGSDYFPATSWDDSGGQYPSS 281

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g21210.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21210.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBA4_CUCSA6.4e-2951.27Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055940 PE=4 SV=1[more]
BLAST of Cp4.1LG01g21210.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21210.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446496|ref|XP_004141007.1|9.2e-2951.27PREDICTED: ethylene-responsive transcription factor ABR1-like [Cucumis sativus][more]
gi|659081765|ref|XP_008441501.1|1.6e-2071.59PREDICTED: ethylene-responsive transcription factor ERF113-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g21210Cp4.1LG01g21210gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g21210.1:five_prime_utr:001Cp4.1LG01g21210.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g21210.1:cds:001Cp4.1LG01g21210.1:cds:001CDS
Cp4.1LG01g21210.1:cds:002Cp4.1LG01g21210.1:cds:002CDS
Cp4.1LG01g21210.1:cds:003Cp4.1LG01g21210.1:cds:003CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g21210.1Cp4.1LG01g21210.1-proteinpolypeptide