Cp4.1LG01g21210 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g21210
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 17939712 .. 17941086 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAATTCTTAAAAACAGAGAATCACTGTTCATACTTCGGCCGCGCGTTTAAATTCCTTACAACAAACATCGGCGAGGAATTGGAATCAAAATCAACAGCCTCTGTTTTTTTTTTTTTTTTTTTTTTTNTTTGCATGTGCTTGTTCAAGGTGGCGAATCGGCGAGGAATTGGAGGTGACTTGGGACCGTTTCCAAGTGGCGGCGGCGATGGCGACGGTGATAACGGCAAAAAGTTATTCTACAGTCAAGAAAATGACGGCGATTATTATTCCGCTGTCGGAGAGGTGTCGGCGATGGTGTCGGTGTTAACCGATGTGGTGTCTGGGGTGGGGGCAGCCGACTCAAACTACAGCGGCGGGCAGGTTTTTTCGTCTTCATCGTCAACGTCGACTTCTTCGCCGCTGTCGAGTTTCTCGTCGGAACCGAGCTATGTGTCGGCGATGAGTTCTTGGGTTGGGCAGAAACGACTACGTGAAGGAGAAAATGCAGAAACAGAGCGTAATTTTGATTCTCTTTCGCGGGTTTTTAATGGACAATCTTCCTCCGCCGTAATTACTGCAGGTTCGTAACAGAGCCGAGCTTGAAATTTTAATTTAATTATATTTGGATTTTAAAATTTTAGAAAATAAATGTGGAAGAGAAAATTAAGCAATGGAACAGTACAAGAAATTAATCTGGATTTTTTTTTTGTGTAGTGAAAGAAGAAATTCCAATTCCGTACACCGGAATTTCAAATCCCGGCACCGCCGTTGCGGCGTCTCCAATGAGCGAGACGGCGGCGGCTACGGCTGTTAGCGATAGAAGAAGAAGATACAGAGGAGTACGGCAGCGGCCATGGGGGAAATGGGCGGCGGAGATTCGTGATCCGCATAAGGCGGCTAGAGTTTGGCTCGGGACGTTCGACACGGCGGAGGCTGCCGCTCTAGCATACGACGAAGCTGCCCTCCGATTCAGAGGAAACAAAGCGAAACTCAATTTCCCTGAAAATGTCGGGTTACTTCCTCCGCAGCAGCAGCACATTCCGATATCCAGCCCCCAATTTGTTCCGCCACGGACGGCGGCGCTTCAGATACAGAATTACCGGGATTACATGGAATATTCCAATTTTCTTCAAAGCTCCGGCGACTTCCTTGGACAACCTTCGAGTTTACTGCAGCAAATGTATTATAATGCGCAGTTGACTCCGTTTCAATATTTGCCGGCGCCAGCGCCGTCGTTGTCCTCTGTTTCAAATTCTGTTTTTATTCCGCCGCAGCAGCAGCAGCAACAAATGGGGTTATTCCGGCCGCCGCGGTCGCAAAATCAAAACCAGGATGGCTCCGATTGCTTCCCCGGTACGTCGTGGAATGATTCCGGTGCTCCATCATCCGGCTGA

mRNA sequence

TCTAATTCTTAAAAACAGAGAATCACTGTTCATACTTCGGCCGCGCGTTTAAATTCCTTACAACAAACATCGGCGAGGAATTGGAATCAAAATCAACAGCCTCTGTTTTTTTTTTTTTTTTTTTTTTTNTTTGCATGTGCTTGTTCAAGGTGGCGAATCGGCGAGGAATTGGAGGTGACTTGGGACCGTTTCCAAGTGGCGGCGGCGATGGCGACGGTGATAACGGCAAAAAGTTATTCTACAGTCAAGAAAATGACGGCGATTATTATTCCGCTGTCGGAGAGGTGTCGGCGATGGTGTCGGTGTTAACCGATGTGGTGTCTGGGGTGGGGGCAGCCGACTCAAACTACAGCGGCGGGCAGGTTTTTTCGTCTTCATCGTCAACGTCGACTTCTTCGCCGCTGTCGAGTTTCTCGTCGGAACCGAGCTATGTGTCGGCGATGAGTTCTTGGGTTGGGCAGAAACGACTACGTGAAGGAGAAAATGCAGAAACAGAGCGTAATTTTGATTCTCTTTCGCGGGTTTTTAATGGACAATCTTCCTCCGCCGTAATTACTGCAGTGAAAGAAGAAATTCCAATTCCGTACACCGGAATTTCAAATCCCGGCACCGCCGTTGCGGCCTCCGGCGACTTCCTTGGACAACCTTCGAGTTTACTGCAGCAAATGTATTATAATGCGCAGTTGACTCCGTTTCAATATTTGCCGGCGCCAGCGCCGTCGTTGTCCTCTGTTTCAAATTCTGTTTTTATTCCGCCGCAGCAGCAGCAGCAACAAATGGGGTTATTCCGGCCGCCGCGGTCGCAAAATCAAAACCAGGATGGCTCCGATTGCTTCCCCGGTACGTCGTGGAATGATTCCGGTGCTCCATCATCCGGCTGA

Coding sequence (CDS)

ATGTGCTTGTTCAAGGTGGCGAATCGGCGAGGAATTGGAGGTGACTTGGGACCGTTTCCAAGTGGCGGCGGCGATGGCGACGGTGATAACGGCAAAAAGTTATTCTACAGTCAAGAAAATGACGGCGATTATTATTCCGCTGTCGGAGAGGTGTCGGCGATGGTGTCGGTGTTAACCGATGTGGTGTCTGGGGTGGGGGCAGCCGACTCAAACTACAGCGGCGGGCAGGTTTTTTCGTCTTCATCGTCAACGTCGACTTCTTCGCCGCTGTCGAGTTTCTCGTCGGAACCGAGCTATGTGTCGGCGATGAGTTCTTGGGTTGGGCAGAAACGACTACGTGAAGGAGAAAATGCAGAAACAGAGCGTAATTTTGATTCTCTTTCGCGGGTTTTTAATGGACAATCTTCCTCCGCCGTAATTACTGCAGTGAAAGAAGAAATTCCAATTCCGTACACCGGAATTTCAAATCCCGGCACCGCCGTTGCGGCCTCCGGCGACTTCCTTGGACAACCTTCGAGTTTACTGCAGCAAATGTATTATAATGCGCAGTTGACTCCGTTTCAATATTTGCCGGCGCCAGCGCCGTCGTTGTCCTCTGTTTCAAATTCTGTTTTTATTCCGCCGCAGCAGCAGCAGCAACAAATGGGGTTATTCCGGCCGCCGCGGTCGCAAAATCAAAACCAGGATGGCTCCGATTGCTTCCCCGGTACGTCGTGGAATGATTCCGGTGCTCCATCATCCGGCTGA

Protein sequence

MCLFKVANRRGIGGDLGPFPSGGGDGDGDNGKKLFYSQENDGDYYSAVGEVSAMVSVLTDVVSGVGAADSNYSGGQVFSSSSSTSTSSPLSSFSSEPSYVSAMSSWVGQKRLREGENAETERNFDSLSRVFNGQSSSAVITAVKEEIPIPYTGISNPGTAVAASGDFLGQPSSLLQQMYYNAQLTPFQYLPAPAPSLSSVSNSVFIPPQQQQQQMGLFRPPRSQNQNQDGSDCFPGTSWNDSGAPSSG
Homology
[Close]
BLAST of Cp4.1LG01g21210 vs. TrEMBL
Match: A0A0A0KBA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055940 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.4e-29
Identity = 101/197 (51.27%), Postives = 118/197 (59.90%), Query Frame = 1 

Query: 1   MCLFKVANRRGIGGDLGPFPSGG-GDGDGDNG-------------KKLFYSQENDGDYYS 60
           MC  KVANRRGIG DL  FPSGG GDGDGD G              +L Y Q +DGDYYS
Sbjct: 1   MCSLKVANRRGIGSDLAQFPSGGAGDGDGDTGGGGGGGSSSSDDPHRLLYGQRDDGDYYS 60

Query: 61  AVGEVSAMVSVLTDVVSGVGAADSNYSGGQVF-------SSSSSTSTSSPLSSFSSEPSY 120
           AVGEVS +VS LT+V+SG  A D  Y  GQ F       SSSSS+ST+S   S  SE SY
Sbjct: 61  AVGEVSTIVSTLTNVMSGQAAPDWGYGRGQGFPRGFVSSSSSSSSSTTSASGSSGSELSY 120

Query: 121 VSAMSS-WVGQKRLREGE-NAETERNFDSLSRVFN---------GQSSSAVITAVKEEI- 165
           V  MSS WVGQKR+RE E + +T+ +F S SR F+          Q  S+ I  VKEE+ 
Sbjct: 121 VPGMSSYWVGQKRMREEEISVQTQHDFHSASRGFSFIRGFDHHFSQPQSS-IPPVKEEVP 180

[Close]
BLAST of Cp4.1LG01g21210 vs. NCBI nr
Match: gi|449446496|ref|XP_004141007.1| (PREDICTED: ethylene-responsive transcription factor ABR1-like [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 9.2e-29
Identity = 101/197 (51.27%), Postives = 118/197 (59.90%), Query Frame = 1 

Query: 1   MCLFKVANRRGIGGDLGPFPSGG-GDGDGDNG-------------KKLFYSQENDGDYYS 60
           MC  KVANRRGIG DL  FPSGG GDGDGD G              +L Y Q +DGDYYS
Sbjct: 1   MCSLKVANRRGIGSDLAQFPSGGAGDGDGDTGGGGGGGSSSSDDPHRLLYGQRDDGDYYS 60

Query: 61  AVGEVSAMVSVLTDVVSGVGAADSNYSGGQVF-------SSSSSTSTSSPLSSFSSEPSY 120
           AVGEVS +VS LT+V+SG  A D  Y  GQ F       SSSSS+ST+S   S  SE SY
Sbjct: 61  AVGEVSTIVSTLTNVMSGQAAPDWGYGRGQGFPRGFVSSSSSSSSSTTSASGSSGSELSY 120

Query: 121 VSAMSS-WVGQKRLREGE-NAETERNFDSLSRVFN---------GQSSSAVITAVKEEI- 165
           V  MSS WVGQKR+RE E + +T+ +F S SR F+          Q  S+ I  VKEE+ 
Sbjct: 121 VPGMSSYWVGQKRMREEEISVQTQHDFHSASRGFSFIRGFDHHFSQPQSS-IPPVKEEVP 180

[Close]
BLAST of Cp4.1LG01g21210 vs. NCBI nr
Match: gi|659081765|ref|XP_008441501.1| (PREDICTED: ethylene-responsive transcription factor ERF113-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 63/88 (71.59%), Postives = 68/88 (77.27%), Query Frame = 1 

Query: 164 SGDFLGQPSSLLQQMYYNAQLTPFQYL--PAPAPSLSSVSNSVFIPPQQQQQQMGLFRPP 223
           SGD L QPSSLLQQM+YNAQL PF+    PAPAPS+SSVSNSVF  P  QQQQMG+FR P
Sbjct: 195 SGDILRQPSSLLQQMFYNAQLPPFESSSSPAPAPSMSSVSNSVFFNPTLQQQQMGIFR-P 254

Query: 224 RSQNQNQDGSDCFPGTSWNDSGA--PSS 248
             QNQNQ GSD FP TSW+DSG   PSS
Sbjct: 255 SPQNQNQGGSDYFPATSWDDSGGQYPSS 281

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g21210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBA4_CUCSA6.4e-2951.27Uncharacterized protein OS=Cucumis sativus GN=Csa_6G055940 PE=4 SV=1[more]
BLAST of Cp4.1LG01g21210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446496|ref|XP_004141007.1|9.2e-2951.27PREDICTED: ethylene-responsive transcription factor ABR1-like [Cucumis sativus][more]
gi|659081765|ref|XP_008441501.1|1.6e-2071.59PREDICTED: ethylene-responsive transcription factor ERF113-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21210.1Cp4.1LG01g21210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g21210Cucsa.363830Cucumber (Gy14) v1cgycpeB0961
Cp4.1LG01g21210CmaCh15G005870Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g21210CmaCh04G024550Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g21210CmoCh04G025710Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g21210CmoCh15G005930Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g21210Cla013808Watermelon (97103) v1cpewmB393
Cp4.1LG01g21210Csa6G055940Cucumber (Chinese Long) v2cpecuB459
Cp4.1LG01g21210MELO3C008331Melon (DHL92) v3.5.1cpemeB401
Cp4.1LG01g21210ClCG08G007100Watermelon (Charleston Gray)cpewcgB415
Cp4.1LG01g21210CSPI06G04770Wild cucumber (PI 183967)cpecpiB460
Cp4.1LG01g21210Lsi08G005640Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g21210MELO3C008331.2Melon (DHL92) v3.6.1cpemedB468
Cp4.1LG01g21210CsaV3_6G005100Cucumber (Chinese Long) v3cpecucB0568
Cp4.1LG01g21210CsGy6G004720Cucumber (Gy14) v2cgybcpeB797
Cp4.1LG01g21210Carg15798Silver-seed gourdcarcpeB0096
Cp4.1LG01g21210Carg01611Silver-seed gourdcarcpeB1158
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g21210Cp4.1LG13g04070Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g21210Cucumber (Chinese Long) v3cpecucB0572
Cp4.1LG01g21210Cucumber (Chinese Long) v3cpecucB0584
Cp4.1LG01g21210Wax gourdcpewgoB0533
Cp4.1LG01g21210Cucurbita pepo (Zucchini)cpecpeB404
Cp4.1LG01g21210Cucumber (Gy14) v1cgycpeB0136
Cp4.1LG01g21210Cucurbita moschata (Rifu)cmocpeB014
Cp4.1LG01g21210Cucumber (Chinese Long) v2cpecuB473
Cp4.1LG01g21210Bottle gourd (USVL1VR-Ls)cpelsiB338
Cp4.1LG01g21210Cucumber (Gy14) v2cgybcpeB943