Cp4.1LG01g15640.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g15640.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Phosphoribosyl pyrophosphate synthase 3 isoform 4
Location	Cp4.1LG01 : 9300513 .. 9302962 (-)
Sequence length	630

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTGAAGTTCTTTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAAGCGACGCCAAGAAGATCTGCCTCTTGTTCTGCTAGGCGAGACGAAGATTCTTCGCAGAAAATTGCTGCTGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGGTTAGTTCAATTATGTAGCTATATGGAGAAGAAATCTGTAGGAATATGCTTTCAATTTATGATACAGAATTTTTTAATATGCTTTCAATTTATGGTTTCCATTTGAGACTTCAAAATGTCCCCGCAGAAAGAACGATTAAGATTGTATTGCTGCGTAGCTCAGCCCGGTGAAGTTATTTGTGTTCCTGATCGTAATGTCGAATTGTTGAGATTTTGAAAGTTCTCCAATGTTTTTAAGTTTATAGCATTTTTCACTGCGAAACAACATTGCGTATTCTGCCTTTTTAATTTAAGCATGATAAACATAAGCTGTTCGAGTTTCACAGAAGTTTATTCAAAATCAAAAGTCCTTTGGATTAATGCTTGCACAGTTCTTATATTAGGAAGTTTGAAGATGGATTACGAACATAATTATGTCCAATGCTAAAGGAATTCGTGAACAACATGTTGCCTTTCTGGCATCCTTCAAGTTCCCCTGTGTGAACTTTGAGCAACTCTCCCTTATTTATGCACTGCTGAAATTGTTCGTCTCTTCATTGACGCCTGTTCTCTCCATCTTTCCAACTGGAAATTTTGACTAAGCTTTTACTATTGCTCGGATCTCGATTATATATATGAATTTGGAGAGGAGGGCCGACTAACTGTGTACCTTTTGACATTCATGATGCAGATTCATTAACAAGCAGAACTTTACTTTTTAGAAGATAACTTGCTCTGCCTATTAGAATCCCTCACTTTTTTGAGTTTTTCCTCCTCTTCAGTGGCTGTTATTATTATTATTATTTTTTTTTTTTGTAGCAGAAGCTCTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTAAAAAATAGTGTGCAACAGTTGCCAGATTCTGACCATGTAAGCTCTCGTNATCCCTCACTTTTTTGAGTTTTTCCTCCTCTTCAGTGGCTGTTATTTTTTTTGTAGCAGAAGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTAAAAAATAGTGTGCAACAGTTGCCAGATTCTGACCATGTAAGCTCTCGTGTTTATGAACACGGCACGTGATATAACTGTGGGAAGGGAAAGCCCAAAAGAGACAACATCTGTTAGCGGTAGATTTTGACTGTTATAAATTATATCAGAACCAAACATGGAGCGATGTGCTAGCAAGGAGGTTGAGCCCCAAAGGGATAGATATGAGGCGGTGTGCCATCAAGGACGATAGGCTCCGAAGAGAGGTGGATTGAGGATTTTACATTGATTGGAAAAAAGAACGAGTGTCAGCGAGGACGCTGGCCCCAAAGAGAGTGGATTGTGAGACCCNGTGATGTAACTGTGGGAAGGGAAAGCCCGAAAGAGACAATATCTGTTAGCGGTAGATTTCGACGATTATAAATGATATTAGAACTAAATATGGAGCGATGTGCTAGCAGGAGGTTGAGCCCCAAAGGGATAGATATGAGGCGGTGTGCCATCAAGGACGATAGGCTCCGAAGAGAGGTGGATTGAGGATTTTACATTGATTGGAAAAAAGAACGAGTGTCAGCGAGGACGCTGGCCCCAAAGAGAGTGGATTGTGAGACCCGACGCATTTCAAAAATTTTAAGGAGAAGTTCGAGGAAAAAAGTTCAAAGAAGACAATATTTGCTAGTGGTAAGCTTCACCGGTTACCATAGCTAGCTTCAATATGCACTGCTAAAGTTGTTTTTGAATATTTCTCTCGAAANGAATTTTACATTGATTGGAGAAAAGAACGAGTGCCAGCGAGGACGCTGGCCCCAAAGAGAGTGGATTGTGAGACCCGACGCATTTCAAAAACCTTAAGGAGAAGTCCGAGGAAAAAAGTTCAAAGAAGACAATATTTGCTAGCGGTAAGCTTAAGCTGATTTTTAATATGCACTGCTAAAGTTGTTTTTGAATATTTCTCTCGAAATTGCATTGTGAGCTAAGGTTAATCTAGACTTTTGTAGTGCAATTGTGGAACATATTTTAGTTTGTAATCTCTCTCTGACGTGACAGAATTTGCTGCTTTCNGGCTTTTGTAGTGCAATTGTCGAACATATTTAAGTTTGTAATCTCTCTCTGACGTGACAGAATTTGCTGCTTTCCCGATAGCAATGGCTTTTCCGGACGATGGAGTATGGCAAGGACTTCATAAA

mRNA sequence

CTCCTGAAGTTCTTTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAAGCGACGCCAAGAAGATCTGCCTCTTGCGAGACGAAGATTCTTCGCAGAAAATTGCTGCTGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGATGGATTACGAACATAATTATGTCCAATGCTAAAGGAATTCGTGAACAACATGTTGCCTTTCTGGCATCCTTCAAGTTCCCCTGTGTGAACTTTGAGCAACTCTCCCTTATTTATGCACTGCTGAAATTGTTCGTCTCTTCATTGACGCCTCAGAAGCTCTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTAAAAAATAGTGTGCAACAGTTGCCAGATTCTGACCATAAGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTAAAAAATAAATTTGCTGCTTTCCCGATAGCAATGGCTTTTCCGGACGATGGAGTATGGCAAGGACTTCATAAA

Coding sequence (CDS)

CTCCTGAAGTTCTTTGCGTGCGAGATCAAGAACATCGAGAATTCTTTTCAGTGGACTGTTGAAAGCGTTCCTGGGACTGATTCTTTCTGTTCAATTCAAAAATCTGCTTCTACTTCGATCTCGATACCGACGACTACTGCCTCTCTAGAACTGACGCCTAAAAGCGACGCCAAGAAGATCTGCCTCTTGCGAGACGAAGATTCTTCGCAGAAAATTGCTGCTGAGTCTGATGGAATTGAGCCACGTGATGGCTTATGGAGATGGATTACGAACATAATTATGTCCAATGCTAAAGGAATTCGTGAACAACATGTTGCCTTTCTGGCATCCTTCAAGTTCCCCTGTGTGAACTTTGAGCAACTCTCCCTTATTTATGCACTGCTGAAATTGTTCGTCTCTTCATTGACGCCTCAGAAGCTCTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTAAAAAATAGTGTGCAACAGTTGCCAGATTCTGACCATAAGCTTTACTTGGGTGACAATACTTTACCATCCTTTGAAGTGGAATTCCTGCTAAAAAATAAATTTGCTGCTTTCCCGATAGCAATGGCTTTTCCGGACGATGGAGTATGGCAAGGACTTCATAAA

Protein sequence

LLKFFACEIKNIENSFQWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLLRDEDSSQKIAAESDGIEPRDGLWRWITNIIMSNAKGIREQHVAFLASFKFPCVNFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVEFLLKNSVQQLPDSDHKLYLGDNTLPSFEVEFLLKNKFAAFPIAMAFPDDGVWQGLHK

Homology

[Close]

BLAST of Cp4.1LG01g15640.1 vs. Swiss-Prot
Match: KPRS3_ARATH (Ribose-phosphate pyrophosphokinase 3, chloroplastic OS=Arabidopsis thaliana GN=PRS3 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-24
Identity = 82/238 (34.45%), Postives = 120/238 (50.42%), Query Frame = 1


Query: 7   CEIKNIEN-SFQWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLLRD 66
           C ++++EN S   +++ +   D    I  ++S+ I++   T+    +    +K++CL   
Sbjct: 50  CGVRSLENHSGHRSLDFLSNGDPISLINPNSSSPITMAAATSE---SGSKSSKRVCLFHS 109

Query: 67  E---DSSQKIAAESDGIEPRDGLWR----WITNIIMSNAKGIREQHVAFLASFKFPCVNF 126
           +   D +++I A+SD IE R   W+       N+ + NA+GIR QHVAFLASF  P V F
Sbjct: 110 DETRDLAERIVAKSDCIELRSINWKKFDDGFPNLFIQNAQGIRGQHVAFLASFSSPAVIF 169

Query: 127 EQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS------ 186
           EQLS+IYAL KLFVSS T    +    T    E E      F L   +  +P S      
Sbjct: 170 EQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTS 229

Query: 187 ---------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                      + Y GD  LP FE    LLK++  + P    I++AFPDDG W+  HK
Sbjct: 230 LVTFDIHALQERFYFGDTILPCFESGIPLLKSRLQSLPDSDNISIAFPDDGAWKRFHK 284

[Close]

BLAST of Cp4.1LG01g15640.1 vs. Swiss-Prot
Match: KPRS3_SPIOL (Ribose-phosphate pyrophosphokinase 3, mitochondrial OS=Spinacia oleracea GN=PRS3 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22
Identity = 74/187 (39.57%), Postives = 95/187 (50.80%), Query Frame = 1


Query: 57  AKKICLLRDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLA 116
           +KK+CL    ++   +++IAA+SD I+ R   WR       N+ +SNA+GIR +HVAFLA
Sbjct: 93  SKKVCLFYCPETKALAERIAAQSDAIQLRSISWRTFEDGFPNLFISNAQGIRGKHVAFLA 152

Query: 117 SFKFPCVNFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQL 176
           SF  P V FEQLS+IYAL KLFV+S      +    T    E E      F L   +  +
Sbjct: 153 SFSSPGVIFEQLSVIYALPKLFVASFKLVLPFFPTGTSERMEDEGDVATAFTLARILSNI 212

Query: 177 PDS---------------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDG 211
           P S                 + Y GDN LP FE    LLK K    P    I +AFPDDG
Sbjct: 213 PISREGPTSLVTFDIHALQERFYFGDNILPCFESGIPLLKKKLQQLPDSDNITIAFPDDG 272

[Close]

BLAST of Cp4.1LG01g15640.1 vs. Swiss-Prot
Match: KPRS3_ORYSJ (Ribose-phosphate pyrophosphokinase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0723600 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-19
Identity = 66/172 (38.37%), Postives = 85/172 (49.42%), Query Frame = 1


Query: 69  SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCVNFEQLSLI 128
           ++++ A +D IE R   WR       N+ +SNA  IR QHVAFLASF  P V FEQLS+I
Sbjct: 111 AEQVVARNDDIELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASFSSPSVIFEQLSII 170

Query: 129 YALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS------------ 188
           YAL KLF+SS T    +    T    E E      F L   +  +P S            
Sbjct: 171 YALPKLFISSFTLILPFFPTGTSERMEDEGDVATAFTLARILSNIPISRGGPSSLVIFDI 230

Query: 189 ---DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                + Y GD+ LP FE    LLK++    P    I +AFPDDG W+  +K
Sbjct: 231 HALQERFYFGDSVLPCFESGIPLLKSRLQELPDSDNITIAFPDDGAWKRFYK 282

[Close]

BLAST of Cp4.1LG01g15640.1 vs. Swiss-Prot
Match: KPRS4_SPIOL (Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-18
Identity = 66/190 (34.74%), Postives = 93/190 (48.95%), Query Frame = 1


Query: 54  KSDAKKICL---LRDEDSSQKIAAESDGIEPRDGLWR----WITNIIMSNAKGIREQHVA 113
           K + K++ L   +  E+ ++K+AA+S  I  +   WR       N+ ++NA+ IR QHVA
Sbjct: 3   KPNTKQVLLFYCVEAEELARKVAAQSPLITLQSINWRSFDDGFPNLFINNAQDIRGQHVA 62

Query: 114 FLASFKFPCVNFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSV 173
           FLA+F  P V FEQLS+IYAL +LFV+S T    +    +    E E      F +   +
Sbjct: 63  FLAAFSSPAVIFEQLSVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARIL 122

Query: 174 QQLPDS---------------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFP 211
             +P S                 + Y  DN LP FE    LLK +    P    I +AFP
Sbjct: 123 SNIPVSRGGPTSVVIYDIHALQERFYFSDNVLPLFETGIPLLKQRLDQLPDADKIVVAFP 182

[Close]

BLAST of Cp4.1LG01g15640.1 vs. Swiss-Prot
Match: KPRS4_ORYSJ (Ribose-phosphate pyrophosphokinase 4 OS=Oryza sativa subsp. japonica GN=Os02g0714600 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-18
Identity = 63/175 (36.00%), Postives = 84/175 (48.00%), Query Frame = 1


Query: 66  EDSSQKIAAESDGIEPRDGLWR----WITNIIMSNAKGIREQHVAFLASFKFPCVNFEQL 125
           E+ + K+AA SD I  +   WR       N+ ++NA  IR QHVAFLASF  P V FEQ+
Sbjct: 24  EELALKVAASSDTIHLQSINWRSFDDGFPNLFINNAHDIRGQHVAFLASFSSPSVIFEQI 83

Query: 126 SLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS--------- 185
           S+I+AL KLF++S T    +    +    E E      F L   +  +P S         
Sbjct: 84  SVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 143

Query: 186 ------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                   + Y GD+ LP FE    LL  +    P    I +AFPDDG W+  HK
Sbjct: 144 YDIHALQERFYFGDDVLPCFETGIPLLLQRLRQLPDADNITIAFPDDGAWKRFHK 198

[Close]

BLAST of Cp4.1LG01g15640.1 vs. TrEMBL
Match: A0A0A0KQ59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598760 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-43
Identity = 121/243 (49.79%), Postives = 140/243 (57.61%), Query Frame = 1


Query: 6   ACEIKNIENSFQWTVESVPGT-DSFCSIQKSASTSISIPTTTAS-----LELTPKSDAKK 65
           ACEIKN ENS+ WT+ESVPGT DSFCSIQ SASTS SIP  TAS     LELT K+DAKK
Sbjct: 45  ACEIKNFENSYHWTIESVPGTTDSFCSIQNSASTSTSIPMATASAAIAALELTSKNDAKK 104

Query: 66  ICLLRDEDS---SQKIAAESDGIEPRDGLWR----WITNIIMSNAKGIREQHVAFLASFK 125
           ICL    ++   ++KIA ESDGI+ R   WR       NI + NA+GIR QHVAFLASF 
Sbjct: 105 ICLFFCPETKALAEKIADESDGIDLRSISWRKFEDGFPNIFIPNAQGIRGQHVAFLASFS 164

Query: 126 FPCVNFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS 185
            P V FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S
Sbjct: 165 SPSVIFEQLSVIYALPKLFISSFTLVLPFFPTGTFERMEDEGDVATAFTLARILSNIPIS 224

Query: 186 ---------------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQ 210
                            + Y GDN LP FE    LLKN+    P    IA+AFPDDG W+
Sbjct: 225 RGGPTSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNIAIAFPDDGAWK 284

[Close]

BLAST of Cp4.1LG01g15640.1 vs. TrEMBL
Match: A0A061EE76_THECC (Phosphoribosyl pyrophosphate synthase 3 isoform 4 OS=Theobroma cacao GN=TCM_010478 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-28
Identity = 96/240 (40.00%), Postives = 123/240 (51.25%), Query Frame = 1


Query: 5   FACEIKNIENSF-QWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLL 64
           F C+IK+ EN    W+VE + GT+    IQ S S+S+S+   +AS         KK+CL 
Sbjct: 40  FWCQIKSFENQPPNWSVEFLSGTEPIHLIQNSPSSSMSMAAASASDSAV--KTVKKVCLF 99

Query: 65  RDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCV 124
              ++   +++IAAESD IE R   WR       N+ + NA GIR QHVAFLASF  P V
Sbjct: 100 YCAETKALAERIAAESDAIEIRSINWRTFEDGFPNLFIPNAHGIRGQHVAFLASFSSPGV 159

Query: 125 NFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS---- 184
            FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S    
Sbjct: 160 IFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGP 219

Query: 185 -----------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                        + Y GDN LP FE    LLKN+    P    I++AFPDDG W+  HK
Sbjct: 220 TSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNISIAFPDDGAWKRFHK 277

[Close]

BLAST of Cp4.1LG01g15640.1 vs. TrEMBL
Match: A0A061E6F5_THECC (Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 5 OS=Theobroma cacao GN=TCM_010478 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-28
Identity = 96/240 (40.00%), Postives = 123/240 (51.25%), Query Frame = 1


Query: 5   FACEIKNIENSF-QWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLL 64
           F C+IK+ EN    W+VE + GT+    IQ S S+S+S+   +AS         KK+CL 
Sbjct: 40  FWCQIKSFENQPPNWSVEFLSGTEPIHLIQNSPSSSMSMAAASASDSAV--KTVKKVCLF 99

Query: 65  RDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCV 124
              ++   +++IAAESD IE R   WR       N+ + NA GIR QHVAFLASF  P V
Sbjct: 100 YCAETKALAERIAAESDAIEIRSINWRTFEDGFPNLFIPNAHGIRGQHVAFLASFSSPGV 159

Query: 125 NFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS---- 184
            FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S    
Sbjct: 160 IFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGP 219

Query: 185 -----------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                        + Y GDN LP FE    LLKN+    P    I++AFPDDG W+  HK
Sbjct: 220 TSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNISIAFPDDGAWKRFHK 277

[Close]

BLAST of Cp4.1LG01g15640.1 vs. TrEMBL
Match: A0A061E891_THECC (Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 2 OS=Theobroma cacao GN=TCM_010478 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-28
Identity = 96/240 (40.00%), Postives = 123/240 (51.25%), Query Frame = 1


Query: 5   FACEIKNIENSF-QWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLL 64
           F C+IK+ EN    W+VE + GT+    IQ S S+S+S+   +AS         KK+CL 
Sbjct: 40  FWCQIKSFENQPPNWSVEFLSGTEPIHLIQNSPSSSMSMAAASASDSAV--KTVKKVCLF 99

Query: 65  RDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCV 124
              ++   +++IAAESD IE R   WR       N+ + NA GIR QHVAFLASF  P V
Sbjct: 100 YCAETKALAERIAAESDAIEIRSINWRTFEDGFPNLFIPNAHGIRGQHVAFLASFSSPGV 159

Query: 125 NFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS---- 184
            FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S    
Sbjct: 160 IFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGP 219

Query: 185 -----------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                        + Y GDN LP FE    LLKN+    P    I++AFPDDG W+  HK
Sbjct: 220 TSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNISIAFPDDGAWKRFHK 277

[Close]

BLAST of Cp4.1LG01g15640.1 vs. TrEMBL
Match: A0A061E7H7_THECC (Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 3 OS=Theobroma cacao GN=TCM_010478 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-28
Identity = 96/240 (40.00%), Postives = 123/240 (51.25%), Query Frame = 1


Query: 5   FACEIKNIENSF-QWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLL 64
           F C+IK+ EN    W+VE + GT+    IQ S S+S+S+   +AS         KK+CL 
Sbjct: 40  FWCQIKSFENQPPNWSVEFLSGTEPIHLIQNSPSSSMSMAAASASDSAV--KTVKKVCLF 99

Query: 65  RDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCV 124
              ++   +++IAAESD IE R   WR       N+ + NA GIR QHVAFLASF  P V
Sbjct: 100 YCAETKALAERIAAESDAIEIRSINWRTFEDGFPNLFIPNAHGIRGQHVAFLASFSSPGV 159

Query: 125 NFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS---- 184
            FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S    
Sbjct: 160 IFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGP 219

Query: 185 -----------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                        + Y GDN LP FE    LLKN+    P    I++AFPDDG W+  HK
Sbjct: 220 TSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNISIAFPDDGAWKRFHK 277

[Close]

BLAST of Cp4.1LG01g15640.1 vs. TAIR10
Match: AT1G10700.1 (AT1G10700.1 phosphoribosyl pyrophosphate (PRPP) synthase 3)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-25
Identity = 82/238 (34.45%), Postives = 120/238 (50.42%), Query Frame = 1


Query: 7   CEIKNIEN-SFQWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLLRD 66
           C ++++EN S   +++ +   D    I  ++S+ I++   T+    +    +K++CL   
Sbjct: 50  CGVRSLENHSGHRSLDFLSNGDPISLINPNSSSPITMAAATSE---SGSKSSKRVCLFHS 109

Query: 67  E---DSSQKIAAESDGIEPRDGLWR----WITNIIMSNAKGIREQHVAFLASFKFPCVNF 126
           +   D +++I A+SD IE R   W+       N+ + NA+GIR QHVAFLASF  P V F
Sbjct: 110 DETRDLAERIVAKSDCIELRSINWKKFDDGFPNLFIQNAQGIRGQHVAFLASFSSPAVIF 169

Query: 127 EQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS------ 186
           EQLS+IYAL KLFVSS T    +    T    E E      F L   +  +P S      
Sbjct: 170 EQLSVIYALPKLFVSSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTS 229

Query: 187 ---------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                      + Y GD  LP FE    LLK++  + P    I++AFPDDG W+  HK
Sbjct: 230 LVTFDIHALQERFYFGDTILPCFESGIPLLKSRLQSLPDSDNISIAFPDDGAWKRFHK 284

[Close]

BLAST of Cp4.1LG01g15640.1 vs. TAIR10
Match: AT2G42910.1 (AT2G42910.1 Phosphoribosyltransferase family protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-18
Identity = 63/178 (35.39%), Postives = 83/178 (46.63%), Query Frame = 1


Query: 63  LRDEDSSQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCVNF 122
           L  E+ ++ IAAESD I  +   WR       N+ ++NA  IR QHVAFLASF  P V F
Sbjct: 34  LECEELARNIAAESDHITLQSINWRSFADGFPNLFINNAHDIRGQHVAFLASFSSPAVIF 93

Query: 123 EQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS------ 182
           EQ+S+IY L +LFV+S T    +    +    E E      F +   V  +P S      
Sbjct: 94  EQISVIYLLPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARIVSNIPISRGGPTS 153

Query: 183 ---------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                      + Y  D  LP FE    LL  +    P    + +AFPDDG W+  HK
Sbjct: 154 VVIYDIHALQERFYFADQVLPLFETGIPLLTKRLQQLPETEKVIVAFPDDGAWKRFHK 211

[Close]

BLAST of Cp4.1LG01g15640.1 vs. NCBI nr
Match: gi|449434967|ref|XP_004135267.1| (PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 121/243 (49.79%), Postives = 140/243 (57.61%), Query Frame = 1


Query: 6   ACEIKNIENSFQWTVESVPGT-DSFCSIQKSASTSISIPTTTAS-----LELTPKSDAKK 65
           ACEIKN ENS+ WT+ESVPGT DSFCSIQ SASTS SIP  TAS     LELT K+DAKK
Sbjct: 45  ACEIKNFENSYHWTIESVPGTTDSFCSIQNSASTSTSIPMATASAAIAALELTSKNDAKK 104

Query: 66  ICLLRDEDS---SQKIAAESDGIEPRDGLWR----WITNIIMSNAKGIREQHVAFLASFK 125
           ICL    ++   ++KIA ESDGI+ R   WR       NI + NA+GIR QHVAFLASF 
Sbjct: 105 ICLFFCPETKALAEKIADESDGIDLRSISWRKFEDGFPNIFIPNAQGIRGQHVAFLASFS 164

Query: 126 FPCVNFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS 185
            P V FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S
Sbjct: 165 SPSVIFEQLSVIYALPKLFISSFTLVLPFFPTGTFERMEDEGDVATAFTLARILSNIPIS 224

Query: 186 ---------------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQ 210
                            + Y GDN LP FE    LLKN+    P    IA+AFPDDG W+
Sbjct: 225 RGGPTSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNIAIAFPDDGAWK 284

[Close]

BLAST of Cp4.1LG01g15640.1 vs. NCBI nr
Match: gi|659090733|ref|XP_008446171.1| (PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 2.5e-43
Identity = 120/244 (49.18%), Postives = 139/244 (56.97%), Query Frame = 1


Query: 6   ACEIKNIENSFQWTVESVPGT-DSFCSIQKSASTSISIPTTTAS-----LELTPKSDAKK 65
           ACEIKN EN++QWT+ESVPGT DSFCSIQ SAS S S+P   AS     LELT K+DAKK
Sbjct: 45  ACEIKNFENTYQWTIESVPGTTDSFCSIQNSASISTSVPMAAASAAVAALELTSKTDAKK 104

Query: 66  ICLL---RDEDSSQKIAAESDGIEPRDGLWR----WITNIIMSNAKGIREQHVAFLASFK 125
           ICL      +  ++KIA ESDGI+ R   WR       NI + NA+GIR QHVAFLASF 
Sbjct: 105 ICLFFCPETKTLAEKIADESDGIDLRSISWRKFEDGFPNIFIPNAQGIRGQHVAFLASFS 164

Query: 126 FPCVNFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS 185
            P V FEQLS+IYAL KLFVSS T    +    T    E E      F L   +  +P S
Sbjct: 165 SPSVIFEQLSVIYALPKLFVSSFTLVLPFFPTGTFERMEDEGDVATAFTLARILSHIPIS 224

Query: 186 ---------------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQ 211
                            + Y GDN LP FE    LLKN+    P    IA+AFPDDG W+
Sbjct: 225 RGGPTSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNIAIAFPDDGAWK 284

[Close]

BLAST of Cp4.1LG01g15640.1 vs. NCBI nr
Match: gi|590694969|ref|XP_007044760.1| (Phosphoribosyl pyrophosphate synthase 3 isoform 7 [Theobroma cacao])

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 96/240 (40.00%), Postives = 123/240 (51.25%), Query Frame = 1


Query: 5   FACEIKNIENSF-QWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLL 64
           F C+IK+ EN    W+VE + GT+    IQ S S+S+S+   +AS         KK+CL 
Sbjct: 40  FWCQIKSFENQPPNWSVEFLSGTEPIHLIQNSPSSSMSMAAASASDSAV--KTVKKVCLF 99

Query: 65  RDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCV 124
              ++   +++IAAESD IE R   WR       N+ + NA GIR QHVAFLASF  P V
Sbjct: 100 YCAETKALAERIAAESDAIEIRSINWRTFEDGFPNLFIPNAHGIRGQHVAFLASFSSPGV 159

Query: 125 NFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS---- 184
            FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S    
Sbjct: 160 IFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGP 219

Query: 185 -----------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                        + Y GDN LP FE    LLKN+    P    I++AFPDDG W+  HK
Sbjct: 220 TSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNISIAFPDDGAWKRFHK 277

[Close]

BLAST of Cp4.1LG01g15640.1 vs. NCBI nr
Match: gi|590694961|ref|XP_007044758.1| (Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 5 [Theobroma cacao])

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 96/240 (40.00%), Postives = 123/240 (51.25%), Query Frame = 1


Query: 5   FACEIKNIENSF-QWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLL 64
           F C+IK+ EN    W+VE + GT+    IQ S S+S+S+   +AS         KK+CL 
Sbjct: 40  FWCQIKSFENQPPNWSVEFLSGTEPIHLIQNSPSSSMSMAAASASDSAV--KTVKKVCLF 99

Query: 65  RDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCV 124
              ++   +++IAAESD IE R   WR       N+ + NA GIR QHVAFLASF  P V
Sbjct: 100 YCAETKALAERIAAESDAIEIRSINWRTFEDGFPNLFIPNAHGIRGQHVAFLASFSSPGV 159

Query: 125 NFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS---- 184
            FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S    
Sbjct: 160 IFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGP 219

Query: 185 -----------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                        + Y GDN LP FE    LLKN+    P    I++AFPDDG W+  HK
Sbjct: 220 TSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNISIAFPDDGAWKRFHK 277

[Close]

BLAST of Cp4.1LG01g15640.1 vs. NCBI nr
Match: gi|590694957|ref|XP_007044757.1| (Phosphoribosyl pyrophosphate synthase 3 isoform 4 [Theobroma cacao])

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 96/240 (40.00%), Postives = 123/240 (51.25%), Query Frame = 1


Query: 5   FACEIKNIENSF-QWTVESVPGTDSFCSIQKSASTSISIPTTTASLELTPKSDAKKICLL 64
           F C+IK+ EN    W+VE + GT+    IQ S S+S+S+   +AS         KK+CL 
Sbjct: 40  FWCQIKSFENQPPNWSVEFLSGTEPIHLIQNSPSSSMSMAAASASDSAV--KTVKKVCLF 99

Query: 65  RDEDS---SQKIAAESDGIEPRDGLWRWIT----NIIMSNAKGIREQHVAFLASFKFPCV 124
              ++   +++IAAESD IE R   WR       N+ + NA GIR QHVAFLASF  P V
Sbjct: 100 YCAETKALAERIAAESDAIEIRSINWRTFEDGFPNLFIPNAHGIRGQHVAFLASFSSPGV 159

Query: 125 NFEQLSLIYALLKLFVSSLTPQKLYLGDNTLPSFEVE------FLLKNSVQQLPDS---- 184
            FEQLS+IYAL KLF+SS T    +    T    E E      F L   +  +P S    
Sbjct: 160 IFEQLSVIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGP 219

Query: 185 -----------DHKLYLGDNTLPSFEVEF-LLKNKFAAFP----IAMAFPDDGVWQGLHK 211
                        + Y GDN LP FE    LLKN+    P    I++AFPDDG W+  HK
Sbjct: 220 TSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQQLPDSDNISIAFPDDGAWKRFHK 277

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g15640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KPRS3_ARATH	2.6e-24	34.45	Ribose-phosphate pyrophosphokinase 3, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
KPRS3_SPIOL	2.4e-22	39.57	Ribose-phosphate pyrophosphokinase 3, mitochondrial OS=Spinacia oleracea GN=PRS3...	[more]
KPRS3_ORYSJ	1.9e-19	38.37	Ribose-phosphate pyrophosphokinase 3, chloroplastic OS=Oryza sativa subsp. japon...	[more]
KPRS4_SPIOL	3.6e-18	34.74	Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1	[more]
KPRS4_ORYSJ	4.7e-18	36.00	Ribose-phosphate pyrophosphokinase 4 OS=Oryza sativa subsp. japonica GN=Os02g071...	[more]

BLAST of Cp4.1LG01g15640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ59_CUCSA	1.0e-43	49.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598760 PE=4 SV=1	[more]
A0A061EE76_THECC	3.5e-28	40.00	Phosphoribosyl pyrophosphate synthase 3 isoform 4 OS=Theobroma cacao GN=TCM_0104...	[more]
A0A061E6F5_THECC	3.5e-28	40.00	Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 5 OS=Theobroma cacao GN=T...	[more]
A0A061E891_THECC	3.5e-28	40.00	Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 2 OS=Theobroma cacao GN=T...	[more]
A0A061E7H7_THECC	3.5e-28	40.00	Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 3 OS=Theobroma cacao GN=T...	[more]

BLAST of Cp4.1LG01g15640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10700.1	1.5e-25	34.45	phosphoribosyl pyrophosphate (PRPP) synthase 3	[more]
AT2G42910.1	1.7e-18	35.39	Phosphoribosyltransferase family protein	[more]

BLAST of Cp4.1LG01g15640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434967\|ref\|XP_004135267.1\|	1.5e-43	49.79	PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Cucumis sativus]	[more]
gi\|659090733\|ref\|XP_008446171.1\|	2.5e-43	49.18	PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Cucumis melo]	[more]
gi\|590694969\|ref\|XP_007044760.1\|	5.1e-28	40.00	Phosphoribosyl pyrophosphate synthase 3 isoform 7 [Theobroma cacao]	[more]
gi\|590694961\|ref\|XP_007044758.1\|	5.1e-28	40.00	Phosphoribosyl pyrophosphate (PRPP) synthase 3 isoform 5 [Theobroma cacao]	[more]
gi\|590694957\|ref\|XP_007044757.1\|	5.1e-28	40.00	Phosphoribosyl pyrophosphate synthase 3 isoform 4 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g15640	Cp4.1LG01g15640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g15640.1	Cp4.1LG01g15640.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g15640.1:cds:006	Cp4.1LG01g15640.1:cds:006	CDS
Cp4.1LG01g15640.1:cds:005	Cp4.1LG01g15640.1:cds:005	CDS
Cp4.1LG01g15640.1:cds:004	Cp4.1LG01g15640.1:cds:004	CDS
Cp4.1LG01g15640.1:cds:003	Cp4.1LG01g15640.1:cds:003	CDS
Cp4.1LG01g15640.1:cds:002	Cp4.1LG01g15640.1:cds:002	CDS
Cp4.1LG01g15640.1:cds:001	Cp4.1LG01g15640.1:cds:001	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10210	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE	coord: 49..136 score: 2.9
None	No IPR available	PANTHER	PTHR10210:SF45	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 3, CHLOROPLASTIC	coord: 49..136 score: 2.9