Cp4.1LG01g12760.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g12760.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Thioredoxin h
Location	Cp4.1LG01 : 8598103 .. 8599116 (-)
Sequence length	856

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATATAAAATTTTAAAAGCATTCACATAGATTGGAGGCGACGGAATCATATTTTTTCTTCTCATTATATAAAGCTGATCATCAGCCATGTCTTCAAACAAGATTTCTATCTTAGAAGAGGCTCAAACAAAGATCTGAGTTCAAAACTTGAAGCTTCAGTTTCAAAAAAAATGGGAGCAAGCTTTACAATCCCACGTTCAAGATCTTCCAATGCAACATTACAAGCCATGGCTCCCACCATTGTGGAGTGCCACAACAAAGCAGAGTGGACAGCTCGTTTGGAAGCCACAAGGGAAACAAACAAGCTTGTAAGTTTAATACCAACTCTTTATCCCAACATATAGGGATGCAAACGCTTTGGGTTTGTGATTTCTTCTTGTGCTGCTGGTTTGGTATAGATGGTGATTGACTTCACTGCTGCATGGTGTGAACCTTGTCGACGAATGGAGCCGATCATCAAGGAGTTTGCTTCGAGGTTCAAGGATGTTGAGTTCGTCAAAATCGACGTCGATGAGTTGATGGTATGAGCTTTCAATCTTGTTTTGATTCAATCTTGTTTTGACTGTGTTGAAAAAATGGATGACAACAGGATGTTGCAAAGGAATATGGAGTGGACGCAATGCCAACATTCATACTGATTAAGAAGGGGAAGGTAGTTGATAAGGTGGTCGGCGCCAGGAAGGATGACCTGCAGAAGAAGATTGAGAATCATAGTAAATATTGATGGATGCTCCTCTTGAAGCTTCTCAATAAGCCAGGAAGAACTAGTACTATAGAACAAACTAAAATGGTGTTTATTTTATTATTCCAGCCCTTCTCACTTCTGATATAAAAAGAAAAAAAAGTATACTTCCTTCTGCTATTTGTCCAATCTCTCTGTCTTTCTCTTCCTCTGCCCAAATTACGCACAAGTATTGTAATGTTTCAAGTCTACTACTAGGAGATATTGTCCTCTTTGGACAAACGTGTCAGCTAGGGAGACGTAAGCTCACCTCTAGTAGATATTGTCCTC

mRNA sequence

ATTTATATAAAATTTTAAAAGCATTCACATAGATTGGAGGCGACGGAATCATATTTTTTCTTCTCATTATATAAAGCTGATCATCAGCCATGTCTTCAAACAAGATTTCTATCTTAGAAGAGGCTCAAACAAAGATCTGAGTTCAAAACTTGAAGCTTCAGTTTCAAAAAAAATGGGAGCAAGCTTTACAATCCCACGTTCAAGATCTTCCAATGCAACATTACAAGCCATGGCTCCCACCATTGTGGAGTGCCACAACAAAGCAGAGTGGACAGCTCGTTTGGAAGCCACAAGGGAAACAAACAAGCTTATGGTGATTGACTTCACTGCTGCATGGTGTGAACCTTGTCGACGAATGGAGCCGATCATCAAGGAGTTTGCTTCGAGGTTCAAGGATGTTGAGTTCGTCAAAATCGACGTCGATGAGTTGATGGATGTTGCAAAGGAATATGGAGTGGACGCAATGCCAACATTCATACTGATTAAGAAGGGGAAGGTAGTTGATAAGGTGGTCGGCGCCAGGAAGGATGACCTGCAGAAGAAGATTGAGAATCATAGTAAATATTGATGGATGCTCCTCTTGAAGCTTCTCAATAAGCCAGGAAGAACTAGTACTATAGAACAAACTAAAATGGTGTTTATTTTATTATTCCAGCCCTTCTCACTTCTGATATAAAAAGAAAAAAAAGTATACTTCCTTCTGCTATTTGTCCAATCTCTCTGTCTTTCTCTTCCTCTGCCCAAATTACGCACAAGTATTGTAATGTTTCAAGTCTACTACTAGGAGATATTGTCCTCTTTGGACAAACGTGTCAGCTAGGGAGACGTAAGCTCACCTCTAGTAGATATTGTCCTC

Coding sequence (CDS)

ATGGGAGCAAGCTTTACAATCCCACGTTCAAGATCTTCCAATGCAACATTACAAGCCATGGCTCCCACCATTGTGGAGTGCCACAACAAAGCAGAGTGGACAGCTCGTTTGGAAGCCACAAGGGAAACAAACAAGCTTATGGTGATTGACTTCACTGCTGCATGGTGTGAACCTTGTCGACGAATGGAGCCGATCATCAAGGAGTTTGCTTCGAGGTTCAAGGATGTTGAGTTCGTCAAAATCGACGTCGATGAGTTGATGGATGTTGCAAAGGAATATGGAGTGGACGCAATGCCAACATTCATACTGATTAAGAAGGGGAAGGTAGTTGATAAGGTGGTCGGCGCCAGGAAGGATGACCTGCAGAAGAAGATTGAGAATCATAGTAAATATTGA

Protein sequence

MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENHSKY

Homology

[Close]

BLAST of Cp4.1LG01g12760.1 vs. Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRF-KDVEFVKID 83
           ++ CH    WT +L+  +E+NKL+VIDFTA+WC PCR + PI  + A +F     F K+D
Sbjct: 8   VIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVD 67

Query: 84  VDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENHS 130
           VDEL  VAKE+GV+AMPTF+ IK G+VVDK+VGA K+DLQ KI  H+
Sbjct: 68  VDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]

BLAST of Cp4.1LG01g12760.1 vs. Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-28
Identity = 52/102 (50.98%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVKIDV 83
           +++  + A W       +E+NKL+V+DF+A+WC PCR +EP I   A +F DV+FVK+DV
Sbjct: 27  VLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDV 86

Query: 84  DELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKI 126
           DEL DVAKE+ V AMPTF+L+K+GK +++++GA+KD+L+KK+
Sbjct: 87  DELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKV 128

[Close]

BLAST of Cp4.1LG01g12760.1 vs. Swiss-Prot
Match: TRXH1_ORYSJ (Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-28
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVKIDV 83
           ++ CHNK E+ A++   +E  K+++IDFTA+WC PCR + P+  E+A +F    F+K+DV
Sbjct: 8   VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 67

Query: 84  DELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENH 129
           DEL +VA++Y V+AMPTF+ IK G   DKVVGARKDDLQ  I  H
Sbjct: 68  DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112

[Close]

BLAST of Cp4.1LG01g12760.1 vs. Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-28
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVKIDV 83
           ++ CHNK E+ A++   +E  K+++IDFTA+WC PCR + P+  E+A +F    F+K+DV
Sbjct: 8   VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDV 67

Query: 84  DELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENH 129
           DEL +VA++Y V+AMPTF+ IK G   DKVVGARKDDLQ  I  H
Sbjct: 68  DELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112

[Close]

BLAST of Cp4.1LG01g12760.1 vs. Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.2e-28
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRF-KDVEFVKID 83
           ++ CH    W  +L+  +++NKL+VIDFTA+WC PCR + P+  + A +F     F K+D
Sbjct: 8   VIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVD 67

Query: 84  VDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENHS 130
           VDEL +VA+E+GV+AMPTF+LIK G VVDKVVGARK+DL   I  H+
Sbjct: 68  VDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHT 114

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TrEMBL
Match: A0A0A0KQG0_CUCSA (Thioredoxin h OS=Cucumis sativus GN=Csa_5G604150 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.6e-57
Identity = 109/131 (83.21%), Postives = 120/131 (91.60%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MGASFT+PRS+SSNA +Q   PTI+ECH+KA+WTAR EAT+ETNKLMVIDFTAAWC PCR
Sbjct: 1   MGASFTVPRSKSSNAMIQQKPPTIIECHDKAQWTARFEATKETNKLMVIDFTAAWCGPCR 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            MEP IKE A+RFKDVEFVKIDVDELMDVAKEYGV+AMPTFILIK GKV+DKVVGAR+DD
Sbjct: 61  HMEPTIKELAARFKDVEFVKIDVDELMDVAKEYGVEAMPTFILIKNGKVIDKVVGARRDD 120

Query: 121 LQKKIENHSKY 132
           LQKKIE HSKY
Sbjct: 121 LQKKIEKHSKY 131

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TrEMBL
Match: A0A068VME5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012890001 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-34
Identity = 72/128 (56.25%), Postives = 99/128 (77.34%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MGA+ +  +  + ++++      +V  H+ A+W    EA++ETNKL+VIDFTA+WC PC+
Sbjct: 1   MGANVSAWQEANIDSSMALKKSPVVAFHSSAKWKIHFEASKETNKLIVIDFTASWCGPCQ 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            +EP I E A+++ DVEFVKIDVDEL DVA+EYGV AMPTFIL+KKGK +DK+VGA+K++
Sbjct: 61  YIEPSINELAAKYTDVEFVKIDVDELDDVAEEYGVQAMPTFILLKKGKAIDKIVGAKKEE 120

Query: 121 LQKKIENH 129
           LQKKIE H
Sbjct: 121 LQKKIEKH 128

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TrEMBL
Match: M5Y5Y2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013299mg PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-34
Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MG + +  +  S + + +     I+  H+K +W     A++E+NKLMVIDFTA WC PCR
Sbjct: 1   MGGNLSHIQDYSDDDSSRGKKSRIMAFHSKDQWNTHFNASKESNKLMVIDFTATWCGPCR 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            MEP +KE+A ++ DVEF+K+DVDEL DVA+E+GV AMP+F+ +KKG VVDKVVGARK++
Sbjct: 61  AMEPTLKEYADKYTDVEFIKLDVDELPDVAREFGVQAMPSFVFVKKGDVVDKVVGARKEE 120

Query: 121 LQKKIENHSK 131
           LQKKIE H K
Sbjct: 121 LQKKIEKHRK 130

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TrEMBL
Match: K4BWK9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 72/130 (55.38%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNA--TLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEP 60
           MGA+++     + N   T Q+    ++  H+  +W    ++ + TNKL+VIDFTA WC P
Sbjct: 1   MGANYSSTWHETHNMPITPQSKRSQVIAFHSSTKWKLHFDSLKNTNKLIVIDFTATWCGP 60

Query: 61  CRRMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARK 120
           C+ MEP++ +FA+++ DVEFVKIDVDEL DVA+EYGV AMPTF+LIKKGKVVDK+VGA K
Sbjct: 61  CKYMEPVLNDFAAKYTDVEFVKIDVDELDDVAQEYGVQAMPTFVLIKKGKVVDKIVGADK 120

Query: 121 DDLQKKIENH 129
           D LQKKI+ H
Sbjct: 121 DGLQKKIQKH 130

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TrEMBL
Match: M1BHP2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017632 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-33
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNA--TLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEP 60
           MGA+++     + N   T Q     ++  H+  +W    ++ + TNKL+VIDFTA WC P
Sbjct: 1   MGANYSSTWHETHNMPITPQIKRSQVIAFHSSTKWKLHFDSLKNTNKLIVIDFTATWCGP 60

Query: 61  CRRMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARK 120
           C+ MEP++ +FA+++ DVEFVKIDVDEL DVA+EYGV AMPTFILIKKGKVVDK+VGA K
Sbjct: 61  CKYMEPVLNDFAAKYTDVEFVKIDVDELDDVAQEYGVQAMPTFILIKKGKVVDKIVGADK 120

Query: 121 DDLQKKIENH 129
           D LQKKI+ H
Sbjct: 121 DGLQKKIQKH 130

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TAIR10
Match: AT1G19730.1 (AT1G19730.1 Thioredoxin superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-30
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRF-KDVEFVKID 83
           ++ CH    WT +L+  +E+NKL+VIDFTA+WC PCR + PI  + A +F     F K+D
Sbjct: 8   VIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVD 67

Query: 84  VDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENHS 130
           VDEL  VAKE+GV+AMPTF+ IK G+VVDK+VGA K+DLQ KI  H+
Sbjct: 68  VDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TAIR10
Match: AT5G39950.1 (AT5G39950.1 thioredoxin 2)

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-29
Identity = 52/102 (50.98%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVKIDV 83
           +++  + A W       +E+NKL+V+DF+A+WC PCR +EP I   A +F DV+FVK+DV
Sbjct: 27  VLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDV 86

Query: 84  DELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKI 126
           DEL DVAKE+ V AMPTF+L+K+GK +++++GA+KD+L+KK+
Sbjct: 87  DELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKV 128

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TAIR10
Match: AT1G45145.1 (AT1G45145.1 thioredoxin H-type 5)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-27
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVKIDV 83
           ++ CH    W  +++   E+ KL+VIDFTA+WC PCR + P+  E A +F +V F KIDV
Sbjct: 7   VIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDV 66

Query: 84  DELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENH 129
           DEL  VA+E+ V+AMPTF+ +K+G ++D+VVGA KD++ +K+  H
Sbjct: 67  DELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TAIR10
Match: AT1G69880.1 (AT1G69880.1 thioredoxin H-type 8)

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-27
Identity = 51/110 (46.36%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 21  APTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVK 80
           +P IVE  N  +W +RL A ++TNKL+VI+FTA WC PC+ +EP ++E A+++ DVEFVK
Sbjct: 36  SPCIVEIKNMNQWKSRLNALKDTNKLLVIEFTAKWCGPCKTLEPKLEELAAKYTDVEFVK 95

Query: 81  IDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENHSK 131
           IDVD LM V  E+ +  +P  + +K+G+ VD VVG + D+L++K+  +++
Sbjct: 96  IDVDVLMSVWMEFNLSTLPAIVFMKRGREVDMVVGVKVDELERKLNKYTQ 145

[Close]

BLAST of Cp4.1LG01g12760.1 vs. TAIR10
Match: AT1G59730.1 (AT1G59730.1 thioredoxin H-type 7)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-26
Identity = 48/105 (45.71%), Postives = 75/105 (71.43%), Query Frame = 1


Query: 24  IVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCRRMEPIIKEFASRFKDVEFVKIDV 83
           +VE  ++ +W +  ++ + +NKL+VIDFTA WC PC+ MEP ++E AS++ +  F ++DV
Sbjct: 23  VVEIESRRQWKSLFDSMKGSNKLLVIDFTAVWCGPCKAMEPRVREIASKYSEAVFARVDV 82

Query: 84  DELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENH 129
           D LMDVA  Y    +P F+ +K+G+ +D+VVGA+ D+L KKIE H
Sbjct: 83  DRLMDVAGTYRAITLPAFVFVKRGEEIDRVVGAKPDELVKKIEQH 127

[Close]

BLAST of Cp4.1LG01g12760.1 vs. NCBI nr
Match: gi|449434841|ref|XP_004135204.1| (PREDICTED: thioredoxin H-type [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 9.4e-57
Identity = 109/131 (83.21%), Postives = 120/131 (91.60%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MGASFT+PRS+SSNA +Q   PTI+ECH+KA+WTAR EAT+ETNKLMVIDFTAAWC PCR
Sbjct: 1   MGASFTVPRSKSSNAMIQQKPPTIIECHDKAQWTARFEATKETNKLMVIDFTAAWCGPCR 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            MEP IKE A+RFKDVEFVKIDVDELMDVAKEYGV+AMPTFILIK GKV+DKVVGAR+DD
Sbjct: 61  HMEPTIKELAARFKDVEFVKIDVDELMDVAKEYGVEAMPTFILIKNGKVIDKVVGARRDD 120

Query: 121 LQKKIENHSKY 132
           LQKKIE HSKY
Sbjct: 121 LQKKIEKHSKY 131

[Close]

BLAST of Cp4.1LG01g12760.1 vs. NCBI nr
Match: gi|659090963|ref|XP_008446296.1| (PREDICTED: thioredoxin H-type-like [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 4.4e-54
Identity = 104/131 (79.39%), Postives = 118/131 (90.08%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MGASFT+P S+SSNA +Q   PTI+ECH+KA+WTAR EAT+ETNKLMVIDF AAWC PCR
Sbjct: 1   MGASFTVPGSKSSNAMIQPKPPTIIECHDKAQWTARFEATKETNKLMVIDFAAAWCGPCR 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            MEPIIKEFA+RFKDVEFVKIDVDELMD+A EYGV+AMPTFILIK GKV+DKVVG R+++
Sbjct: 61  HMEPIIKEFAARFKDVEFVKIDVDELMDIAYEYGVEAMPTFILIKNGKVIDKVVGDRREE 120

Query: 121 LQKKIENHSKY 132
           LQKKIE HSKY
Sbjct: 121 LQKKIEKHSKY 131

[Close]

BLAST of Cp4.1LG01g12760.1 vs. NCBI nr
Match: gi|661866679|emb|CDP21876.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 72/128 (56.25%), Postives = 99/128 (77.34%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MGA+ +  +  + ++++      +V  H+ A+W    EA++ETNKL+VIDFTA+WC PC+
Sbjct: 1   MGANVSAWQEANIDSSMALKKSPVVAFHSSAKWKIHFEASKETNKLIVIDFTASWCGPCQ 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            +EP I E A+++ DVEFVKIDVDEL DVA+EYGV AMPTFIL+KKGK +DK+VGA+K++
Sbjct: 61  YIEPSINELAAKYTDVEFVKIDVDELDDVAEEYGVQAMPTFILLKKGKAIDKIVGAKKEE 120

Query: 121 LQKKIENH 129
           LQKKIE H
Sbjct: 121 LQKKIEKH 128

[Close]

BLAST of Cp4.1LG01g12760.1 vs. NCBI nr
Match: gi|645229951|ref|XP_008221701.1| (PREDICTED: thioredoxin H2-like [Prunus mume])

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-34
Identity = 71/130 (54.62%), Postives = 97/130 (74.62%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MG + +  +  S + + +     I+  H+K +W+    A++E+NKLMVIDFTA WC PCR
Sbjct: 1   MGGNLSHIQDYSDDDSSRGKKSRIMAFHSKDQWSTHFNASKESNKLMVIDFTATWCGPCR 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            MEP +KE+A ++ DVEF+K+DVDEL DVA+E+GV AMP+F+ +KKG VVDKVVGARK++
Sbjct: 61  AMEPTLKEYADKYTDVEFIKLDVDELPDVAREFGVQAMPSFVFVKKGDVVDKVVGARKEE 120

Query: 121 LQKKIENHSK 131
           LQKKIE H K
Sbjct: 121 LQKKIEKHRK 130

[Close]

BLAST of Cp4.1LG01g12760.1 vs. NCBI nr
Match: gi|596290038|ref|XP_007226116.1| (hypothetical protein PRUPE_ppa013299mg [Prunus persica])

HSP 1 Score: 152.9 bits (385), Expect = 3.8e-34
Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 1   MGASFTIPRSRSSNATLQAMAPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCEPCR 60
           MG + +  +  S + + +     I+  H+K +W     A++E+NKLMVIDFTA WC PCR
Sbjct: 1   MGGNLSHIQDYSDDDSSRGKKSRIMAFHSKDQWNTHFNASKESNKLMVIDFTATWCGPCR 60

Query: 61  RMEPIIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDD 120
            MEP +KE+A ++ DVEF+K+DVDEL DVA+E+GV AMP+F+ +KKG VVDKVVGARK++
Sbjct: 61  AMEPTLKEYADKYTDVEFIKLDVDELPDVAREFGVQAMPSFVFVKKGDVVDKVVGARKEE 120

Query: 121 LQKKIENHSK 131
           LQKKIE H K
Sbjct: 121 LQKKIEKHRK 130

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g12760.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXH4_ARATH	2.2e-29	55.14	Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2	[more]
TRXH2_ARATH	1.8e-28	50.98	Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2	[more]
TRXH1_ORYSJ	4.1e-28	52.38	Thioredoxin H1 OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1	[more]
TRXH_ORYSI	4.1e-28	52.38	Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1	[more]
TRXH2_BRANA	9.2e-28	52.34	Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g12760.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQG0_CUCSA	6.6e-57	83.21	Thioredoxin h OS=Cucumis sativus GN=Csa_5G604150 PE=4 SV=1	[more]
A0A068VME5_COFCA	1.6e-34	56.25	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012890001 PE=4 SV=1	[more]
M5Y5Y2_PRUPE	2.7e-34	54.62	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013299mg PE=4 SV=1	[more]
K4BWK9_SOLLC	1.3e-33	55.38	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1BHP2_SOLTU	1.7e-33	56.15	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017632 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g12760.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19730.1	1.2e-30	55.14	Thioredoxin superfamily protein	[more]
AT5G39950.1	1.0e-29	50.98	thioredoxin 2	[more]
AT1G45145.1	2.2e-27	47.62	thioredoxin H-type 5	[more]
AT1G69880.1	2.8e-27	46.36	thioredoxin H-type 8	[more]
AT1G59730.1	1.4e-26	45.71	thioredoxin H-type 7	[more]

BLAST of Cp4.1LG01g12760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434841\|ref\|XP_004135204.1\|	9.4e-57	83.21	PREDICTED: thioredoxin H-type [Cucumis sativus]	[more]
gi\|659090963\|ref\|XP_008446296.1\|	4.4e-54	79.39	PREDICTED: thioredoxin H-type-like [Cucumis melo]	[more]
gi\|661866679\|emb\|CDP21876.1\|	2.3e-34	56.25	unnamed protein product [Coffea canephora]	[more]
gi\|645229951\|ref\|XP_008221701.1\|	2.9e-34	54.62	PREDICTED: thioredoxin H2-like [Prunus mume]	[more]
gi\|596290038\|ref\|XP_007226116.1\|	3.8e-34	54.62	hypothetical protein PRUPE_ppa013299mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR017937	Thioredoxin_CS
IPR013766	Thioredoxin_domain
IPR012336	Thioredoxin-like_fold
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g12760	Cp4.1LG01g12760	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g12760.1:five_prime_utr:001	Cp4.1LG01g12760.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g12760.1:cds:001	Cp4.1LG01g12760.1:cds:001	CDS
Cp4.1LG01g12760.1:cds:002	Cp4.1LG01g12760.1:cds:002	CDS
Cp4.1LG01g12760.1:cds:003	Cp4.1LG01g12760.1:cds:003	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g12760.1:three_prime_utr:001	Cp4.1LG01g12760.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g12760.1	Cp4.1LG01g12760.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 9..130 score: 7.4
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 13..128 score: 8.8
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 19..129 score: 3.46
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 25..128 score: 1.1
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 6..130 score: 14
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 48..66 scor
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 94..105 score: 1.7E-5coord: 47..55 score: 1.7E-5coord: 55..64 score: 1.
None	No IPR available	PANTHER	PTHR10438:SF278	THIOREDOXIN H7-RELATED	coord: 9..130 score: 7.4