Cp4.1LG01g08940.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08940.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 4534144 .. 4534422 (+)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTTGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACGAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGAAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCAGTAGAGGTTACGCTTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

mRNA sequence

ATGGCGGATTTGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACGAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGAAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCAGTAGAGGTTACGCTTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

Coding sequence (CDS)

ATGGCGGATTTGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACGAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGAAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCAGTAGAGGTTACGCTTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

Protein sequence

MADLDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLNASSEKTRIRWRHLLKRWLKGRSRGYAYKSFTFQYDALSYSYNFDDGSHRVQT

Homology

[Close]

BLAST of Cp4.1LG01g08940.1 vs. TrEMBL
Match: A0A061DHC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.4e-10
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 1  MADLDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLN---ASSEKTRIRWRHLLKRW 60
          M+ +++ LSH   F  S    SPSCF  +  +   YSR++   +SS+KTR RWR+LL+R 
Sbjct: 1  MSQMERDLSHRRSFYFSGCMMSPSCFPVH--EEMEYSRIHYRSSSSDKTRRRWRNLLRRL 60

Query: 61 LK-GRSRGYAYKSFTFQYDALSYSYNFDDGSH 89
          ++ G+S  Y  K  +F YDA+SYS NFDDG H
Sbjct: 61 VRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCH 90

[Close]

BLAST of Cp4.1LG01g08940.1 vs. TrEMBL
Match: A0A0D2TZR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G088800 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 1  MADLDQSLSHSNPFQSSSFFA----SPSCFGTNNPKTTHYSRLNASSEKTRIRWRHLLKR 60
          M+++++ L   +   SSSF      SPSCF  +  +   YSR++  SEK R RWR+LL++
Sbjct: 1  MSEMERDLISRHRGGSSSFSGCYTMSPSCFTVH--EDMDYSRIHYCSEKRRKRWRNLLRK 60

Query: 61 WLKGRSRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 93
           ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 LVRDGKKNSMYSPKPLSFHYDAVSYSQNFDEGCHREES 96

[Close]

BLAST of Cp4.1LG01g08940.1 vs. TrEMBL
Match: A0A0A0KJW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-06
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 13 PFQSSSFFASPSCFGTNNPKTTHYSRLN--ASSEKTRIRWRHLLKRWLKGRSRGYAYKSF 72
          P+ S    +SP+CF  +  +   Y+R++  A ++++  RWR+LL++W+K     Y  KS 
Sbjct: 11 PYLSGCVPSSPACFPIH--EGVEYTRIHGGAGAKRSGWRWRYLLRKWVKDGMNIYGSKSL 70

Query: 73 TFQYDALSYSYNFDDGS 88
          +FQYDA+SYS NFD+GS
Sbjct: 71 SFQYDAVSYSQNFDEGS 85

[Close]

BLAST of Cp4.1LG01g08940.1 vs. NCBI nr
Match: gi|590706403|ref|XP_007047712.1| (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 1  MADLDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLN---ASSEKTRIRWRHLLKRW 60
          M+ +++ LSH   F  S    SPSCF  +  +   YSR++   +SS+KTR RWR+LL+R 
Sbjct: 1  MSQMERDLSHRRSFYFSGCMMSPSCFPVH--EEMEYSRIHYRSSSSDKTRRRWRNLLRRL 60

Query: 61 LK-GRSRGYAYKSFTFQYDALSYSYNFDDGSH 89
          ++ G+S  Y  K  +F YDA+SYS NFDDG H
Sbjct: 61 VRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCH 90

[Close]

BLAST of Cp4.1LG01g08940.1 vs. NCBI nr
Match: gi|763781754|gb|KJB48825.1| (hypothetical protein B456_008G088800 [Gossypium raimondii])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 1  MADLDQSLSHSNPFQSSSFFA----SPSCFGTNNPKTTHYSRLNASSEKTRIRWRHLLKR 60
          M+++++ L   +   SSSF      SPSCF  +  +   YSR++  SEK R RWR+LL++
Sbjct: 1  MSEMERDLISRHRGGSSSFSGCYTMSPSCFTVH--EDMDYSRIHYCSEKRRKRWRNLLRK 60

Query: 61 WLKGRSRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 93
           ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 LVRDGKKNSMYSPKPLSFHYDAVSYSQNFDEGCHREES 96

[Close]

BLAST of Cp4.1LG01g08940.1 vs. NCBI nr
Match: gi|700193478|gb|KGN48682.1| (hypothetical protein Csa_6G497320 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-06
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 13 PFQSSSFFASPSCFGTNNPKTTHYSRLN--ASSEKTRIRWRHLLKRWLKGRSRGYAYKSF 72
          P+ S    +SP+CF  +  +   Y+R++  A ++++  RWR+LL++W+K     Y  KS 
Sbjct: 11 PYLSGCVPSSPACFPIH--EGVEYTRIHGGAGAKRSGWRWRYLLRKWVKDGMNIYGSKSL 70

Query: 73 TFQYDALSYSYNFDDGS 88
          +FQYDA+SYS NFD+GS
Sbjct: 71 SFQYDAVSYSQNFDEGS 85

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08940.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g08940.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061DHC4_THECC	9.4e-10	45.65	Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1	[more]
A0A0D2TZR9_GOSRA	1.7e-06	38.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G088800 PE=4 SV=1	[more]
A0A0A0KJW1_CUCSA	3.7e-06	41.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g08940.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g08940.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590706403\|ref\|XP_007047712.1\|	1.3e-09	45.65	Uncharacterized protein TCM_000929 [Theobroma cacao]	[more]
gi\|763781754\|gb\|KJB48825.1\|	2.4e-06	38.78	hypothetical protein B456_008G088800 [Gossypium raimondii]	[more]
gi\|700193478\|gb\|KGN48682.1\|	5.3e-06	41.56	hypothetical protein Csa_6G497320 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011993	PH-like_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g08940	Cp4.1LG01g08940	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g08940.1:cds:001	Cp4.1LG01g08940.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g08940.1	Cp4.1LG01g08940.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011993	PH domain-like	GENE3D	G3DSA:2.30.29.30		coord: 16..63 score: 4.