Cp4.1LG01g08940 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g08940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 4534144 .. 4534422 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATTTGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACGAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGAAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCAGTAGAGGTTACGCTTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

mRNA sequence

ATGGCGGATTTGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACGAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGAAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCAGTAGAGGTTACGCTTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

Coding sequence (CDS)

ATGGCGGATTTGGATCAAAGCCTGAGCCATTCGAATCCCTTCCAGTCTTCTTCCTTCTTCGCTTCGCCCTCCTGTTTTGGCACGAACAATCCAAAAACAACCCACTACTCTCGCCTCAACGCCTCTTCCGAAAAAACCAGAATCAGATGGCGGCATCTTCTCAAAAGGTGGCTCAAGGGTCGCAGTAGAGGTTACGCTTACAAGTCTTTCACCTTCCAGTACGACGCCCTTAGCTATTCCTATAACTTCGACGACGGCTCTCACAGAGTTCAGACATGA

Protein sequence

MADLDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLNASSEKTRIRWRHLLKRWLKGRSRGYAYKSFTFQYDALSYSYNFDDGSHRVQT
BLAST of Cp4.1LG01g08940 vs. TrEMBL
Match: A0A061DHC4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.4e-10
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1

Query: 1  MADLDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLN---ASSEKTRIRWRHLLKRW 60
          M+ +++ LSH   F  S    SPSCF  +  +   YSR++   +SS+KTR RWR+LL+R 
Sbjct: 1  MSQMERDLSHRRSFYFSGCMMSPSCFPVH--EEMEYSRIHYRSSSSDKTRRRWRNLLRRL 60

Query: 61 LK-GRSRGYAYKSFTFQYDALSYSYNFDDGSH 89
          ++ G+S  Y  K  +F YDA+SYS NFDDG H
Sbjct: 61 VRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCH 90

BLAST of Cp4.1LG01g08940 vs. TrEMBL
Match: A0A0D2TZR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G088800 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 1

Query: 1  MADLDQSLSHSNPFQSSSFFA----SPSCFGTNNPKTTHYSRLNASSEKTRIRWRHLLKR 60
          M+++++ L   +   SSSF      SPSCF  +  +   YSR++  SEK R RWR+LL++
Sbjct: 1  MSEMERDLISRHRGGSSSFSGCYTMSPSCFTVH--EDMDYSRIHYCSEKRRKRWRNLLRK 60

Query: 61 WLKGRSRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 93
           ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 LVRDGKKNSMYSPKPLSFHYDAVSYSQNFDEGCHREES 96

BLAST of Cp4.1LG01g08940 vs. TrEMBL
Match: A0A0A0KJW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-06
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1

Query: 13 PFQSSSFFASPSCFGTNNPKTTHYSRLN--ASSEKTRIRWRHLLKRWLKGRSRGYAYKSF 72
          P+ S    +SP+CF  +  +   Y+R++  A ++++  RWR+LL++W+K     Y  KS 
Sbjct: 11 PYLSGCVPSSPACFPIH--EGVEYTRIHGGAGAKRSGWRWRYLLRKWVKDGMNIYGSKSL 70

Query: 73 TFQYDALSYSYNFDDGS 88
          +FQYDA+SYS NFD+GS
Sbjct: 71 SFQYDAVSYSQNFDEGS 85

BLAST of Cp4.1LG01g08940 vs. NCBI nr
Match: gi|590706403|ref|XP_007047712.1| (Uncharacterized protein TCM_000929 [Theobroma cacao])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1

Query: 1  MADLDQSLSHSNPFQSSSFFASPSCFGTNNPKTTHYSRLN---ASSEKTRIRWRHLLKRW 60
          M+ +++ LSH   F  S    SPSCF  +  +   YSR++   +SS+KTR RWR+LL+R 
Sbjct: 1  MSQMERDLSHRRSFYFSGCMMSPSCFPVH--EEMEYSRIHYRSSSSDKTRRRWRNLLRRL 60

Query: 61 LK-GRSRGYAYKSFTFQYDALSYSYNFDDGSH 89
          ++ G+S  Y  K  +F YDA+SYS NFDDG H
Sbjct: 61 VRDGKSSIYGSKPLSFHYDAVSYSQNFDDGCH 90

BLAST of Cp4.1LG01g08940 vs. NCBI nr
Match: gi|763781754|gb|KJB48825.1| (hypothetical protein B456_008G088800 [Gossypium raimondii])

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 1

Query: 1  MADLDQSLSHSNPFQSSSFFA----SPSCFGTNNPKTTHYSRLNASSEKTRIRWRHLLKR 60
          M+++++ L   +   SSSF      SPSCF  +  +   YSR++  SEK R RWR+LL++
Sbjct: 1  MSEMERDLISRHRGGSSSFSGCYTMSPSCFTVH--EDMDYSRIHYCSEKRRKRWRNLLRK 60

Query: 61 WLKGRSRG--YAYKSFTFQYDALSYSYNFDDGSHRVQT 93
           ++   +   Y+ K  +F YDA+SYS NFD+G HR ++
Sbjct: 61 LVRDGKKNSMYSPKPLSFHYDAVSYSQNFDEGCHREES 96

BLAST of Cp4.1LG01g08940 vs. NCBI nr
Match: gi|700193478|gb|KGN48682.1| (hypothetical protein Csa_6G497320 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-06
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 1

Query: 13 PFQSSSFFASPSCFGTNNPKTTHYSRLN--ASSEKTRIRWRHLLKRWLKGRSRGYAYKSF 72
          P+ S    +SP+CF  +  +   Y+R++  A ++++  RWR+LL++W+K     Y  KS 
Sbjct: 11 PYLSGCVPSSPACFPIH--EGVEYTRIHGGAGAKRSGWRWRYLLRKWVKDGMNIYGSKSL 70

Query: 73 TFQYDALSYSYNFDDGS 88
          +FQYDA+SYS NFD+GS
Sbjct: 71 SFQYDAVSYSQNFDEGS 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061DHC4_THECC9.4e-1045.65Uncharacterized protein OS=Theobroma cacao GN=TCM_000929 PE=4 SV=1[more]
A0A0D2TZR9_GOSRA1.7e-0638.78Uncharacterized protein OS=Gossypium raimondii GN=B456_008G088800 PE=4 SV=1[more]
A0A0A0KJW1_CUCSA3.7e-0641.56Uncharacterized protein OS=Cucumis sativus GN=Csa_6G497320 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|590706403|ref|XP_007047712.1|1.3e-0945.65Uncharacterized protein TCM_000929 [Theobroma cacao][more]
gi|763781754|gb|KJB48825.1|2.4e-0638.78hypothetical protein B456_008G088800 [Gossypium raimondii][more]
gi|700193478|gb|KGN48682.1|5.3e-0641.56hypothetical protein Csa_6G497320 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08940.1Cp4.1LG01g08940.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH domain-likeGENE3DG3DSA:2.30.29.30coord: 16..63
score: 4.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g08940Melon (DHL92) v3.6.1cpemedB485
Cp4.1LG01g08940Melon (DHL92) v3.6.1cpemedB509
Cp4.1LG01g08940Silver-seed gourdcarcpeB0562
Cp4.1LG01g08940Silver-seed gourdcarcpeB1302
Cp4.1LG01g08940Silver-seed gourdcarcpeB1417
Cp4.1LG01g08940Cucumber (Chinese Long) v3cpecucB0491
Cp4.1LG01g08940Wax gourdcpewgoB0478
Cp4.1LG01g08940Wax gourdcpewgoB0486
Cp4.1LG01g08940Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG01g08940Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG01g08940Cucurbita pepo (Zucchini)cpecpeB385
Cp4.1LG01g08940Cucumber (Gy14) v1cgycpeB0219
Cp4.1LG01g08940Cucumber (Gy14) v1cgycpeB0680
Cp4.1LG01g08940Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g08940Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g08940Cucurbita maxima (Rimu)cmacpeB876
Cp4.1LG01g08940Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g08940Cucurbita moschata (Rifu)cmocpeB613
Cp4.1LG01g08940Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g08940Cucurbita moschata (Rifu)cmocpeB813
Cp4.1LG01g08940Wild cucumber (PI 183967)cpecpiB392
Cp4.1LG01g08940Cucumber (Chinese Long) v2cpecuB393
Cp4.1LG01g08940Bottle gourd (USVL1VR-Ls)cpelsiB326
Cp4.1LG01g08940Bottle gourd (USVL1VR-Ls)cpelsiB370
Cp4.1LG01g08940Watermelon (Charleston Gray)cpewcgB348
Cp4.1LG01g08940Watermelon (Charleston Gray)cpewcgB349
Cp4.1LG01g08940Watermelon (Charleston Gray)cpewcgB374
Cp4.1LG01g08940Melon (DHL92) v3.5.1cpemeB409
Cp4.1LG01g08940Melon (DHL92) v3.5.1cpemeB434
Cp4.1LG01g08940Cucumber (Gy14) v2cgybcpeB369
Cp4.1LG01g08940Cucumber (Gy14) v2cgybcpeB808