Cp4.1LG01g07980.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGGAAGCCATCATTTCGAGCACAGAAAAAGACCAAAGAAAAGCAGAGCCCACACCCACTAATCCATCCATTCTCACTCCAAAAAGGGGCAAGGAAGTTGGGAGCAAATTTCTCGCCTTTCACACTTCTTTACTCTTCTTCTTATTTCCCCAAATCCCTCAAACACACCTGTTCTTCACTCCATCATCGCTTCACCCAATCAAAAATGGAAGAAACCCACAATCCCCACCCTCCAATCCTCAAACTCCTCGACGTCTCTCTCCGACTCTTCTCCGTTCCTCTCACCATCGCTTCAATCTGCCTCACCGTCACCAACCGCCAGGACAATCCCGACTACGGCACCTTGGAGTTCCACAATCTCAGCGGCCTCAAGTAACCAACTATCTATTTACATCAAATTTCTTCATCTGGGTCTGCTCCAAATTTAAATCCGGTAATGGGTTTTGATTCATTGTTAGGTACATGGTCTCCATATCCGCCATCGCCGCCGCGTACGCTTTGTTCGCCGCGGCGTTTTCTTGGCTCCGATGCTTCGCCGCCAAGGCTTGGGTCTTCTTCGTTTCCGACCAGGTTTATACAATTCCGTCCATTCCCATTTGAATTCATTTCTGTAATTGAATTTGTTGTGTGATGGGTGGTTCAGATTGTGGCTTATTTGATGGTGACATCGGTGGCGGCGGTGGGGGAGATTCTGTATTTGGCTTACTACGGAGACAGGGAGGTTTCGTGGAGTGAGGCTTACAGCACATATGGGAAGTTCTGCGAGAAGATGAAGATGGCTCTGGTCTTTCAAGCTTTGGGATTTGGGTGTTTCTTTGTGGTGGCTGTCGTCTCTGCTTTTAGGGCTTTTCGTATCTTCGACCCTCCTCTTCCTTCTCAACACCTTCAACACCAAAGCAATTAGATTCTGCTTTTACTTCAAATTCTGAGATTTGTAATGCCTTTGCCAATTACTGTTATGTTTGTTGTATCAAATAAGAAAGTGTAAAAGTGGTTGCTTTTCATTTGCATAATGGTGAACAACATAATGGCATCACTCAAATTATTGGTTA CGGAAGCCATCATTTCGAGCACAGAAAAAGACCAAAGAAAAGCAGAGCCCACACCCACTAATCCATCCATTCTCACTCCAAAAAGGGGCAAGGAAGTTGGGAGCAAATTTCTCGCCTTTCACACTTCTTTACTCTTCTTCTTATTTCCCCAAATCCCTCAAACACACCTGTTCTTCACTCCATCATCGCTTCACCCAATCAAAAATGGAAGAAACCCACAATCCCCACCCTCCAATCCTCAAACTCCTCGACGTCTCTCTCCGACTCTTCTCCGTTCCTCTCACCATCGCTTCAATCTGCCTCACCGTCACCAACCGCCAGGACAATCCCGACTACGGCACCTTGGAGTTCCACAATCTCAGCGGCCTCAAGTACATGGTCTCCATATCCGCCATCGCCGCCGCGTACGCTTTGTTCGCCGCGGCGTTTTCTTGGCTCCGATGCTTCGCCGCCAAGGCTTGGGTCTTCTTCGTTTCCGACCAGATTGTGGCTTATTTGATGGTGACATCGGTGGCGGCGGTGGGGGAGATTCTGTATTTGGCTTACTACGGAGACAGGGAGGTTTCGTGGAGTGAGGCTTACAGCACATATGGGAAGTTCTGCGAGAAGATGAAGATGGCTCTGGTCTTTCAAGCTTTGGGATTTGGGTGTTTCTTTGTGGTGGCTGTCGTCTCTGCTTTTAGGGCTTTTCGTATCTTCGACCCTCCTCTTCCTTCTCAACACCTTCAACACCAAAGCAATTAGATTCTGCTTTTACTTCAAATTCTGAGATTTGTAATGCCTTTGCCAATTACTGTTATGTTTGTTGTATCAAATAAGAAAGTGTAAAAGTGGTTGCTTTTCATTTGCATAATGGTGAACAACATAATGGCATCACTCAAATTATTGGTTA ATGGAAGAAACCCACAATCCCCACCCTCCAATCCTCAAACTCCTCGACGTCTCTCTCCGACTCTTCTCCGTTCCTCTCACCATCGCTTCAATCTGCCTCACCGTCACCAACCGCCAGGACAATCCCGACTACGGCACCTTGGAGTTCCACAATCTCAGCGGCCTCAAGTACATGGTCTCCATATCCGCCATCGCCGCCGCGTACGCTTTGTTCGCCGCGGCGTTTTCTTGGCTCCGATGCTTCGCCGCCAAGGCTTGGGTCTTCTTCGTTTCCGACCAGATTGTGGCTTATTTGATGGTGACATCGGTGGCGGCGGTGGGGGAGATTCTGTATTTGGCTTACTACGGAGACAGGGAGGTTTCGTGGAGTGAGGCTTACAGCACATATGGGAAGTTCTGCGAGAAGATGAAGATGGCTCTGGTCTTTCAAGCTTTGGGATTTGGGTGTTTCTTTGTGGTGGCTGTCGTCTCTGCTTTTAGGGCTTTTCGTATCTTCGACCCTCCTCTTCCTTCTCAACACCTTCAACACCAAAGCAATTAG MEETHNPHPPILKLLDVSLRLFSVPLTIASICLTVTNRQDNPDYGTLEFHNLSGLKYMVSISAIAAAYALFAAAFSWLRCFAAKAWVFFVSDQIVAYLMVTSVAAVGEILYLAYYGDREVSWSEAYSTYGKFCEKMKMALVFQALGFGCFFVVAVVSAFRAFRIFDPPLPSQHLQHQSN
BLAST of Cp4.1LG01g07980.1 vs. Swiss-Prot
Match: CSPL3_VITVI (CASP-like protein 2D1 OS=Vitis vinifera GN=VIT_19s0090g00570 PE=2 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 9.5e-52 Identity = 105/170 (61.76%), Postives = 131/170 (77.06%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. Swiss-Prot
Match: CSPL4_SOYBN (CASP-like protein 2D1 OS=Glycine max PE=2 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 4.7e-51 Identity = 103/171 (60.23%), Postives = 134/171 (78.36%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. Swiss-Prot
Match: CSPLC_POPTR (CASP-like protein 2D1 OS=Populus trichocarpa GN=POPTRDRAFT_833824 PE=3 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 8.1e-51 Identity = 102/159 (64.15%), Postives = 127/159 (79.87%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. Swiss-Prot
Match: CSPL7_RICCO (CASP-like protein 2D1 OS=Ricinus communis GN=RCOM_1302390 PE=2 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 2.4e-47 Identity = 97/163 (59.51%), Postives = 124/163 (76.07%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. Swiss-Prot
Match: CSPLX_ARATH (CASP-like protein 2D1 OS=Arabidopsis thaliana GN=At5g54980 PE=2 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 1.4e-39 Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TrEMBL
Match: A0A0A0L6A1_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_3G076530 PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 3.3e-59 Identity = 124/171 (72.51%), Postives = 139/171 (81.29%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TrEMBL
Match: A0A0B0PVY5_GOSAR (CASP-like protein OS=Gossypium arboreum GN=F383_12077 PE=3 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 5.6e-51 Identity = 110/170 (64.71%), Postives = 133/170 (78.24%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TrEMBL
Match: I3S6M6_MEDTR (CASP-like protein OS=Medicago truncatula GN=MTR_0160s0040 PE=2 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 9.6e-51 Identity = 101/159 (63.52%), Postives = 130/159 (81.76%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TrEMBL
Match: A0A0D2SI79_GOSRA (CASP-like protein OS=Gossypium raimondii GN=B456_009G440300 PE=3 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 2.1e-50 Identity = 108/170 (63.53%), Postives = 134/170 (78.82%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TrEMBL
Match: A0A151QLU6_CAJCA (CASP-like protein OS=Cajanus cajan GN=KK1_048568 PE=3 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49 Identity = 103/163 (63.19%), Postives = 131/163 (80.37%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TAIR10
Match: AT5G54980.1 (AT5G54980.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 164.1 bits (414), Expect = 8.0e-41 Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TAIR10
Match: AT1G17200.1 (AT1G17200.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 94.7 bits (234), Expect = 6.0e-20 Identity = 49/160 (30.63%), Postives = 97/160 (60.62%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TAIR10
Match: AT3G14380.1 (AT3G14380.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 84.7 bits (208), Expect = 6.2e-17 Identity = 50/159 (31.45%), Postives = 93/159 (58.49%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. TAIR10
Match: AT4G16442.1 (AT4G16442.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 59.3 bits (142), Expect = 2.8e-09 Identity = 43/164 (26.22%), Postives = 79/164 (48.17%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. NCBI nr
Match: gi|659126871|ref|XP_008463406.1| (PREDICTED: CASP-like protein POPTRDRAFT_833824 [Cucumis melo]) HSP 1 Score: 243.4 bits (620), Expect = 3.0e-61 Identity = 127/173 (73.41%), Postives = 142/173 (82.08%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. NCBI nr
Match: gi|449463260|ref|XP_004149352.1| (PREDICTED: CASP-like protein 2D1 [Cucumis sativus]) HSP 1 Score: 236.1 bits (601), Expect = 4.7e-59 Identity = 124/171 (72.51%), Postives = 139/171 (81.29%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. NCBI nr
Match: gi|728849549|gb|KHG28992.1| (CASP-like protein [Gossypium arboreum]) HSP 1 Score: 208.8 bits (530), Expect = 8.1e-51 Identity = 110/170 (64.71%), Postives = 133/170 (78.24%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. NCBI nr
Match: gi|922326183|ref|XP_013442484.1| (CASP POPTRDRAFT-like protein [Medicago truncatula]) HSP 1 Score: 208.0 bits (528), Expect = 1.4e-50 Identity = 101/159 (63.52%), Postives = 130/159 (81.76%), Query Frame = 1
BLAST of Cp4.1LG01g07980.1 vs. NCBI nr
Match: gi|823222253|ref|XP_012443834.1| (PREDICTED: CASP-like protein 2D1 [Gossypium raimondii]) HSP 1 Score: 206.8 bits (525), Expect = 3.1e-50 Identity = 108/170 (63.53%), Postives = 134/170 (78.82%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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