Cp4.1LG01g05610.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g05610.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 679549 .. 680121 (-)
Sequence length	342

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTCTCATAATCGGATCAGATTTATAAATATTCTTAGCATTATTCATAAATATTAATAAAAATATAATACAAAAACAATAAATTTTACAGTTTGTAATTAATTATTATTAAAGCAGAATTTGACTAAATTTACAGTAATCTATGGACTCAAATCTTTGAATTCGATTATGTAACCTCACACCATTTGAAGGTTGTTTGAGTTATCGGCGGCGCGGAGGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGAGTTATTGATTGGCAGTTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

mRNA sequence

ATGTACGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGATTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

Coding sequence (CDS)

ATGTACGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGATTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

Protein sequence

MYGDPTKRAARLQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTALRRGGGGVYFLRRLVQINCRLVEPLLRRRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE

Homology

[Close]

BLAST of Cp4.1LG01g05610.1 vs. TrEMBL
Match: A0A0A0KSF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210010 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 54/99 (54.55%), Postives = 60/99 (60.61%), Query Frame = 1


Query: 25  TMMAQRQNLNLLPVFKHAQANTALRRGGGG-----VYFLRRLVQI-----NCRLVEPLLR 84
           TM A RQNL+LLPVFKHAQAN AL     G     ++  RRLVQ      N    E LLR
Sbjct: 3   TMTAWRQNLHLLPVFKHAQANGALPCIVCGSARRILFRSRRLVQSDRKGDNSGGAEALLR 62

Query: 85  RRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE 114
           RR G P       EG E + SADP+ VKENKS+EKDDGE
Sbjct: 63  RRTGQPVDGKRGGEGGELVESADPTGVKENKSYEKDDGE 101

[Close]

BLAST of Cp4.1LG01g05610.1 vs. NCBI nr
Match: gi|700195499|gb|KGN50676.1| (hypothetical protein Csa_5G210010 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 54/99 (54.55%), Postives = 60/99 (60.61%), Query Frame = 1


Query: 25  TMMAQRQNLNLLPVFKHAQANTALRRGGGG-----VYFLRRLVQI-----NCRLVEPLLR 84
           TM A RQNL+LLPVFKHAQAN AL     G     ++  RRLVQ      N    E LLR
Sbjct: 3   TMTAWRQNLHLLPVFKHAQANGALPCIVCGSARRILFRSRRLVQSDRKGDNSGGAEALLR 62

Query: 85  RRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE 114
           RR G P       EG E + SADP+ VKENKS+EKDDGE
Sbjct: 63  RRTGQPVDGKRGGEGGELVESADPTGVKENKSYEKDDGE 101

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g05610.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g05610.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSF2_CUCSA	6.1e-11	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210010 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g05610.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g05610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195499\|gb\|KGN50676.1\|	8.8e-11	54.55	hypothetical protein Csa_5G210010 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g05610	Cp4.1LG01g05610	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g05610.1:cds:001	Cp4.1LG01g05610.1:cds:001	CDS
Cp4.1LG01g05610.1:cds:002	Cp4.1LG01g05610.1:cds:002	CDS
Cp4.1LG01g05610.1:cds:003	Cp4.1LG01g05610.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g05610.1	Cp4.1LG01g05610.1-protein	polypeptide