Cp4.1LG01g05610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g05610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 679549 .. 680121 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGTCTCATAATCGGATCAGATTTATAAATATTCTTAGCATTATTCATAAATATTAATAAAAATATAATACAAAAACAATAAATTTTACAGTTTGTAATTAATTATTATTAAAGCAGAATTTGACTAAATTTACAGTAATCTATGGACTCAAATCTTTGAATTCGATTATGTAACCTCACACCATTTGAAGGTTGTTTGAGTTATCGGCGGCGCGGAGGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGAGTTATTGATTGGCAGTTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

mRNA sequence

ATGTACGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGATTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

Coding sequence (CDS)

ATGTACGGAGATCCGACAAAGCGGGCAGCTCGACTGCAACCGGAGCCACTGGTCCACGCACTCCGAGTGGAAACAATGATGGCACAGCGCCAGAATCTTAACCTTCTCCCCGTCTTCAAACACGCCCAAGCAAATACAGCACTCCGCCGCGGTGGCGGCGGCGTCTACTTCCTCCGCCGCCTTGTACAGATTAATTGTCGCCTGGTCGAGCCCCTGTTGCGGCGGCGACCTGGAGGACCGGACGCCAGGGACGGAAGCAGAGAAGGTCGTGAGGCTATGGTATCGGCAGACCCATCGAGCGTAAAGGAAAATAAAAGTCACGAGAAGGATGACGGCGAATAG

Protein sequence

MYGDPTKRAARLQPEPLVHALRVETMMAQRQNLNLLPVFKHAQANTALRRGGGGVYFLRRLVQINCRLVEPLLRRRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE
Homology
[Close]
BLAST of Cp4.1LG01g05610 vs. TrEMBL
Match: A0A0A0KSF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210010 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 54/99 (54.55%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 25  TMMAQRQNLNLLPVFKHAQANTALRRGGGG-----VYFLRRLVQI-----NCRLVEPLLR 84
           TM A RQNL+LLPVFKHAQAN AL     G     ++  RRLVQ      N    E LLR
Sbjct: 3   TMTAWRQNLHLLPVFKHAQANGALPCIVCGSARRILFRSRRLVQSDRKGDNSGGAEALLR 62

Query: 85  RRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE 114
           RR G P       EG E + SADP+ VKENKS+EKDDGE
Sbjct: 63  RRTGQPVDGKRGGEGGELVESADPTGVKENKSYEKDDGE 101

[Close]
BLAST of Cp4.1LG01g05610 vs. NCBI nr
Match: gi|700195499|gb|KGN50676.1| (hypothetical protein Csa_5G210010 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 54/99 (54.55%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 25  TMMAQRQNLNLLPVFKHAQANTALRRGGGG-----VYFLRRLVQI-----NCRLVEPLLR 84
           TM A RQNL+LLPVFKHAQAN AL     G     ++  RRLVQ      N    E LLR
Sbjct: 3   TMTAWRQNLHLLPVFKHAQANGALPCIVCGSARRILFRSRRLVQSDRKGDNSGGAEALLR 62

Query: 85  RRPGGPDARDGSREGREAMVSADPSSVKENKSHEKDDGE 114
           RR G P       EG E + SADP+ VKENKS+EKDDGE
Sbjct: 63  RRTGQPVDGKRGGEGGELVESADPTGVKENKSYEKDDGE 101

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g05610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g05610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSF2_CUCSA6.1e-1154.55Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210010 PE=4 SV=1[more]
BLAST of Cp4.1LG01g05610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g05610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195499|gb|KGN50676.1|8.8e-1154.55hypothetical protein Csa_5G210010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g05610.1Cp4.1LG01g05610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g05610Csa5G210010Cucumber (Chinese Long) v2cpecuB438
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g05610Silver-seed gourdcarcpeB0130
Cp4.1LG01g05610Silver-seed gourdcarcpeB0467
Cp4.1LG01g05610Silver-seed gourdcarcpeB0939
Cp4.1LG01g05610Silver-seed gourdcarcpeB1387
Cp4.1LG01g05610Cucumber (Chinese Long) v3cpecucB0542
Cp4.1LG01g05610Cucumber (Chinese Long) v3cpecucB0566
Cp4.1LG01g05610Wax gourdcpewgoB0543
Cp4.1LG01g05610Wax gourdcpewgoB0554
Cp4.1LG01g05610Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g05610Cucurbita pepo (Zucchini)cpecpeB401
Cp4.1LG01g05610Cucumber (Gy14) v1cgycpeB0979
Cp4.1LG01g05610Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g05610Cucurbita maxima (Rimu)cmacpeB723
Cp4.1LG01g05610Cucurbita moschata (Rifu)cmocpeB582
Cp4.1LG01g05610Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g05610Cucurbita moschata (Rifu)cmocpeB675
Cp4.1LG01g05610Wild cucumber (PI 183967)cpecpiB438
Cp4.1LG01g05610Bottle gourd (USVL1VR-Ls)cpelsiB318
Cp4.1LG01g05610Bottle gourd (USVL1VR-Ls)cpelsiB355
Cp4.1LG01g05610Watermelon (Charleston Gray)cpewcgB410
Cp4.1LG01g05610Watermelon (97103) v1cpewmB418
Cp4.1LG01g05610Melon (DHL92) v3.5.1cpemeB367
Cp4.1LG01g05610Cucumber (Gy14) v2cgybcpeB647
Cp4.1LG01g05610Cucumber (Gy14) v2cgybcpeB795
Cp4.1LG01g05610Melon (DHL92) v3.6.1cpemedB425
Cp4.1LG01g05610Melon (DHL92) v3.6.1cpemedB451
Cp4.1LG01g05610Melon (DHL92) v3.6.1cpemedB477