Cp4.1LG01g05210.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g05210.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Thioredoxin
Location	Cp4.1LG01 : 876375 .. 877505 (+)
Sequence length	975

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGACATATTCTTTCTCTTCTTTACAAAGGTGAAGAACATTTTGAAATATTGAAATACATAAAGAAGTCAAACAAACAATACCCATTCAATGTATAAAAAAATGGGGAAACGAGTAAAGCATTTGAAATATTTATACATAAAACTACGAAACGGGCGAATGGTGCTTTCCAGAGCTGCGTGGTCCTGAAATTCTCCAGTCCCACATCGCTATTTCTCAATTTCCCCTCCTCTTCAACTCCTATAAATTCACCCGCTCAGCTCTCAACTCTCCATTCGGTTTAATACACAGTTCCCATTTCTTCTTCCTTTTCCTTTTCCTTTTCTTCTGTAAGCGACTAAAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGCCTCATGGAAGAAACAGTTCCTCAAAGCCAAACAACACAACAAACTGGTACTCTTTTTTCCTTCCTTTCTCTTTTCACCACGCATACAACAAATCTCATTCTACTATTCTTTTCAACAGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTGACGTTCTTGAAAGTCGACGTTGATGAACTCATGGTATGTTCCAAACTCTTCGAACTGAGAAATTCACTTACTTCAAGGACGCAACAACCGTAACAATAACCGTGATTATCATTGTAGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATGTATTGCTCAACACCGTGTCCAAACATACCGCATGAAGCTGGTCTTCTTATCAGAGTTTGCTTTTCATAAATAAACAACAATGCTGCAAAGAAACATGAAATGTTGTGCAACAAATTTACACGTTTATGTTCTATGGAGACGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGAATTAATAAATCTTTTGTTCTTCCAAACCAACTATAAACCCGGGTTTGATATTTAATTAAGGCAGAGAATATATTCAAAAAATTTATTATAATTAAGAATTCTGAATGTGGAATGCTAGAAAAGAATTTTCGTAGTCTTCT

mRNA sequence

AGGGACATATTCTTTCTCTTCTTTACAAAGGTGAAGAACATTTTGAAATATTGAAATACATAAAGAAGTCAAACAAACAATACCCATTCAATGTATAAAAAAATGGGGAAACGAGTAAAGCATTTGAAATATTTATACATAAAACTACGAAACGGGCGAATGGTGCTTTCCAGAGCTGCGTGGTCCTGAAATTCTCCAGTCCCACATCGCTATTTCTCAATTTCCCCTCCTCTTCAACTCCTATAAATTCACCCGCTCAGCTCTCAACTCTCCATTCGGTTTAATACACAGTTCCCATTTCTTCTTCCTTTTCCTTTTCCTTTTCTTCTGTAAGCGACTAAAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGCCTCATGGAAGAAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTGACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATGTATTGCTCAACACCGTGTCCAAACATACCGCATGAAGCTGGTCTTCTTATCAGAGTTTGCTTTTCATAAATAAACAACAATGCTGCAAAGAAACATGAAATGTTGTGCAACAAATTTACACGTTTATGTTCTATGGAGACGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGAATTAATAAATCTTTTGTTCTTCCAAACCAACTATAAACCCGGGTTTGATATTTAATTAAGGCAGAGAATATATTCAAAAAATTTATTATAATTAAGAATTCTGAATGTGGAATGCTAGAAAAGAATTTTCGTAGTCTTCT

Coding sequence (CDS)

ATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGCCTCATGGAAGAAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTGACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATGTATTGCTCAACACCGTGTCCAAACATACCGCATGA

Protein sequence

MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVTFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA

Homology

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BLAST of Cp4.1LG01g05210.1 vs. Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 4.2e-29
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHT 114
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+ L   + KHT
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-29
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C TV +W +Q  K      L+VV+FTA+WC PCR +AP L +LAKK   NVT
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKK-LPNVT 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
           FLKVDVDEL +VA+E  V ++P+F F K G+++DK VGAKKD L  T++KH A
Sbjct: 63  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-28
Identity = 59/113 (52.21%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T++KH A
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-28
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C  +  W  Q   AKQ NKL+V++FTA+WC PCR +AP+  DLAKK  ++  
Sbjct: 3   AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHT 114
           F KVDVDEL +VA E GV A+P+F   K+G +VDK VGA+K+ L  T++KHT
Sbjct: 63  FFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHT 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-26
Identity = 55/112 (49.11%), Postives = 77/112 (68.75%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+  +V++C TV  W ++F KAK   KL+V++FTA+WC PCR + P + +LAKK   +V
Sbjct: 1   MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKK-FPHV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKH 113
            F KVDVD+L  VA E  V A+PSF   K GQ V++ VGA+KD LL+ ++ H
Sbjct: 61  AFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TrEMBL
Match: A0A0A0KSB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.9e-46
Identity = 93/114 (81.58%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TV SWK+Q LKAKQ NKL+VVNFTATWC PCR MAP+L+DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
           TFLKVDVDELMSVA+E GVGALPSFQFFKNG+LVDKFVGA+KDVL  TVSKH A
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TrEMBL
Match: A0A0A0KLS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-41
Identity = 81/114 (71.05%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV+SWK+  LKA+Q NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK +L NT+SKH+A
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTISKHSA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TrEMBL
Match: A0A0A0KLR8_CUCSA (Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.6e-37
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+ C T+ASW +Q LKA+Q+NKLLVVNFTA WC PC AMA +L++LAKK  NNV
Sbjct: 1   MAEMGKVIKCHTLASWNQQLLKAQQYNKLLVVNFTAKWCGPCHAMAHVLEELAKK-MNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKH 113
            FLKVD+DEL +VANE  V ALPS+ F KNG+LV+KF GAKKDVL +TVSKH
Sbjct: 61  IFLKVDIDELNTVANEFEVTALPSYHFLKNGRLVEKFEGAKKDVLKSTVSKH 111

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TrEMBL
Match: A0A0A0LGF7_CUCSA (Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+  +V++C TV SWK+Q LK KQ +KL+VV+FTA WC PCRA+AP+  +LA+K  +NV
Sbjct: 1   MAEKSQVIACHTVESWKQQLLKGKQFDKLIVVDFTAAWCGPCRAIAPVFVELAEK-MSNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKH 113
            FLKVDVD+L +VA E GV ALP F F KNG++VD+FVGA+KD L   VS H
Sbjct: 61  IFLKVDVDKLTTVAAEWGVSALPCFMFLKNGKMVDRFVGARKDALRKLVSHH 111

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TrEMBL
Match: R0GN56_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010677mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-28
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C     W  Q  KAK+ NKL+V++FTA+WC PCR +AP+  DLAKK  ++  
Sbjct: 3   AEEGQVIGCHANDVWTVQLDKAKESNKLIVIDFTASWCPPCRLIAPVFTDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHT 114
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA+KD LL T+ KHT
Sbjct: 63  FFKVDVDELQSVAQEFGVEAMPTFVFMKAGEVVDKLVGARKDDLLATIVKHT 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TAIR10
Match: AT1G19730.1 (AT1G19730.1 Thioredoxin superfamily protein)

HSP 1 Score: 128.6 bits (322), Expect = 2.4e-30
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHT 114
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+ L   + KHT
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHT 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TAIR10
Match: AT3G51030.1 (AT3G51030.1 thioredoxin H-type 1)

HSP 1 Score: 127.1 bits (318), Expect = 6.9e-30
Identity = 59/113 (52.21%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T++KH A
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TAIR10
Match: AT1G45145.1 (AT1G45145.1 thioredoxin H-type 5)

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-25
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C T+  W ++   A +  KL+V++FTA+WC PCR +AP+  ++AKK   NV
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKK-FTNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKH 113
            F K+DVDEL +VA E  V A+P+F F K G ++D+ VGA KD +   + KH
Sbjct: 61  VFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TAIR10
Match: AT5G42980.1 (AT5G42980.1 thioredoxin 3)

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-25
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C TV  W ++   A +  KL+V++FTATWC PCR +AP+  DLAKK   +V
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHL-DV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKH 113
            F KVDVDEL +VA E  V A+P+F F K G++ +  VGA K+ ++  + KH
Sbjct: 61  VFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111

[Close]

BLAST of Cp4.1LG01g05210.1 vs. TAIR10
Match: AT5G39950.1 (AT5G39950.1 thioredoxin 2)

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-21
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1


Query: 2   ADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++  +V+   + A W+  F + K+ NKLLVV+F+A+WC PCR + P +  +A K  N+V 
Sbjct: 22  SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKF-NDVD 81

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSK 112
           F+K+DVDEL  VA E  V A+P+F   K G+ +++ +GAKKD L   VSK
Sbjct: 82  FVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130

[Close]

BLAST of Cp4.1LG01g05210.1 vs. NCBI nr
Match: gi|449464452|ref|XP_004149943.1| (PREDICTED: thioredoxin H1-like [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-46
Identity = 93/114 (81.58%), Postives = 100/114 (87.72%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TV SWK+Q LKAKQ NKL+VVNFTATWC PCR MAP+L+DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
           TFLKVDVDELMSVA+E GVGALPSFQFFKNG+LVDKFVGA+KDVL  TVSKH A
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. NCBI nr
Match: gi|659129896|ref|XP_008464900.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.2e-45
Identity = 92/114 (80.70%), Postives = 98/114 (85.96%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TV SWK+Q LKAKQ+NKL+VVNFTATWC PCR MAP+L DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
             LKVDVDELMSVANE GVGALPSFQFFKNG+LVDKFVGA+KDVL  TVSKH A
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. NCBI nr
Match: gi|659129894|ref|XP_008464899.1| (PREDICTED: thioredoxin H-type-like [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 9.7e-42
Identity = 80/114 (70.18%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV+SWK+  LKA+Q+NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQYNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK++L +T+SKH+A
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKNLLQSTISKHSA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. NCBI nr
Match: gi|449464454|ref|XP_004149944.1| (PREDICTED: thioredoxin H-type-like [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-41
Identity = 81/114 (71.05%), Postives = 99/114 (86.84%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+MGKV+SC TV+SWK+  LKA+Q NKL+VVNFTA+WC PCR MAP+L++LAKK  NNV
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFTASWCGPCRFMAPILEELAKKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKHTA 115
            FLKVD+DELMS+A E GV ++PSFQF KNG+LVDKFVGAKK +L NT+SKH+A
Sbjct: 61  IFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTISKHSA 114

[Close]

BLAST of Cp4.1LG01g05210.1 vs. NCBI nr
Match: gi|659129892|ref|XP_008464898.1| (PREDICTED: thioredoxin H1-like [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 9.4e-37
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 1


Query: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MAD+GKV++C T+ASW +Q LKA+Q+NKLLVVNFTA WC PC AMA +L++LAKK  NNV
Sbjct: 1   MADVGKVITCHTLASWNQQLLKAQQYNKLLVVNFTARWCGPCHAMASVLEELAKK-MNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTVSKH 113
            FLKVD+DEL SVA E  V ALPS+ F KNG+LV+KF GAKKDVL +TVSKH
Sbjct: 61  IFLKVDIDELNSVAKEFEVAALPSYHFLKNGRLVEKFEGAKKDVLKSTVSKH 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g05210.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRXH4_ARATH	4.2e-29	53.57	Thioredoxin H4 OS=Arabidopsis thaliana GN=TRX4 PE=3 SV=2	[more]
TRXH_RICCO	7.2e-29	53.98	Thioredoxin H-type OS=Ricinus communis PE=3 SV=1	[more]
TRXH1_ARATH	1.2e-28	52.21	Thioredoxin H1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1	[more]
TRXH2_BRANA	2.1e-28	51.79	Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1	[more]
TRXH_FAGES	7.5e-26	49.11	Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1	[more]

BLAST of Cp4.1LG01g05210.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSB1_CUCSA	5.9e-46	81.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190500 PE=4 SV=1	[more]
A0A0A0KLS7_CUCSA	1.2e-41	71.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190490 PE=4 SV=1	[more]
A0A0A0KLR8_CUCSA	8.6e-37	69.64	Thioredoxin H-type OS=Cucumis sativus GN=Csa_5G189900 PE=4 SV=1	[more]
A0A0A0LGF7_CUCSA	1.2e-30	59.82	Thioredoxin OS=Cucumis sativus GN=Csa_3G865340 PE=3 SV=1	[more]
R0GN56_9BRAS	3.3e-28	55.36	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010677mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g05210.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19730.1	2.4e-30	53.57	Thioredoxin superfamily protein	[more]
AT3G51030.1	6.9e-30	52.21	thioredoxin H-type 1	[more]
AT1G45145.1	1.0e-25	45.54	thioredoxin H-type 5	[more]
AT5G42980.1	2.3e-25	47.32	thioredoxin 3	[more]
AT5G39950.1	1.5e-21	43.64	thioredoxin 2	[more]

BLAST of Cp4.1LG01g05210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464452\|ref\|XP_004149943.1\|	8.5e-46	81.58	PREDICTED: thioredoxin H1-like [Cucumis sativus]	[more]
gi\|659129896\|ref\|XP_008464900.1\|	3.2e-45	80.70	PREDICTED: thioredoxin H1-like [Cucumis melo]	[more]
gi\|659129894\|ref\|XP_008464899.1\|	9.7e-42	70.18	PREDICTED: thioredoxin H-type-like [Cucumis melo]	[more]
gi\|449464454\|ref\|XP_004149944.1\|	1.7e-41	71.05	PREDICTED: thioredoxin H-type-like [Cucumis sativus]	[more]
gi\|659129892\|ref\|XP_008464898.1\|	9.4e-37	69.64	PREDICTED: thioredoxin H1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR013766	Thioredoxin_domain
IPR012336	Thioredoxin-like_fold
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g05210	Cp4.1LG01g05210	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g05210.1:five_prime_utr:001	Cp4.1LG01g05210.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g05210.1:cds:003	Cp4.1LG01g05210.1:cds:003	CDS
Cp4.1LG01g05210.1:cds:002	Cp4.1LG01g05210.1:cds:002	CDS
Cp4.1LG01g05210.1:cds:001	Cp4.1LG01g05210.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g05210.1:three_prime_utr:001	Cp4.1LG01g05210.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g05210.1	Cp4.1LG01g05210.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..114 score: 1.0
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 13..112 score: 3.1
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 5..112 score: 1.93
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 14..112 score: 1.0
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 1..114 score: 12
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 78..89 score: 1.2E-5coord: 38..47 score: 1.2E-5coord: 30..38 score: 1.
None	No IPR available	PANTHER	PTHR10438:SF274	THIOREDOXIN H1	coord: 1..114 score: 1.0