Cp4.1LG01g03010.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g03010.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 2067839 .. 2068051 (-)
Sequence length	213

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTCGTACCTCGGCAGTTCTCAGCTTCGTGGTGGCGGTGCTGCTGCTCGTTTACGTCGCAAAAGGGCATGATGGCCACGTGCATCCCCCGTCCTCCGAGCCTACTGCCTCTCCACCGCCGGGGGTGAATGCTGCCACCATGAACAGCTTTTCATACTCTTGGTCTATGGTTATGGCCATGGTGGCTGCTTCTTGGATGCTGTTTTGA

mRNA sequence

ATGGCAGCTCGTACCTCGGCAGTTCTCAGCTTCGTGGTGGCGGTGCTGCTGCTCGTTTACGTCGCAAAAGGGCATGATGGCCACGTGCATCCCCCGTCCTCCGAGCCTACTGCCTCTCCACCGCCGGGGGTGAATGCTGCCACCATGAACAGCTTTTCATACTCTTGGTCTATGGTTATGGCCATGGTGGCTGCTTCTTGGATGCTGTTTTGA

Coding sequence (CDS)

ATGGCAGCTCGTACCTCGGCAGTTCTCAGCTTCGTGGTGGCGGTGCTGCTGCTCGTTTACGTCGCAAAAGGGCATGATGGCCACGTGCATCCCCCGTCCTCCGAGCCTACTGCCTCTCCACCGCCGGGGGTGAATGCTGCCACCATGAACAGCTTTTCATACTCTTGGTCTATGGTTATGGCCATGGTGGCTGCTTCTTGGATGCTGTTTTGA

Protein sequence

MAARTSAVLSFVVAVLLLVYVAKGHDGHVHPPSSEPTASPPPGVNAATMNSFSYSWSMVMAMVAASWMLF

Homology

[Close]

BLAST of Cp4.1LG01g03010.1 vs. TrEMBL
Match: A0A0A0KVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-13
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1  MAARTSAVLSFVVAVLLLVYVAKGHDGHVHPPSSEPTASPPPGVNAATMNSFSYSWSMVM 60
          MAA  SAVLS V+  LLL+ VA  H+GH HPPSSE   +PPP  +AA +NS SY WSM M
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVAASWML 70
          AMVAASW++
Sbjct: 61 AMVAASWII 69

[Close]

BLAST of Cp4.1LG01g03010.1 vs. NCBI nr
Match: gi|700198567|gb|KGN53725.1| (hypothetical protein Csa_4G111600 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-13
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1  MAARTSAVLSFVVAVLLLVYVAKGHDGHVHPPSSEPTASPPPGVNAATMNSFSYSWSMVM 60
          MAA  SAVLS V+  LLL+ VA  H+GH HPPSSE   +PPP  +AA +NS SY WSM M
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVAASWML 70
          AMVAASW++
Sbjct: 61 AMVAASWII 69

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g03010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g03010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVS3_CUCSA	6.9e-13	62.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g03010.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g03010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198567\|gb\|KGN53725.1\|	9.9e-13	62.32	hypothetical protein Csa_4G111600 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g03010	Cp4.1LG01g03010	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g03010.1:cds:001	Cp4.1LG01g03010.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g03010.1	Cp4.1LG01g03010.1-protein	polypeptide