Cp4.1LG01g03010 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03010
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 2067839 .. 2068051 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCGTACCTCGGCAGTTCTCAGCTTCGTGGTGGCGGTGCTGCTGCTCGTTTACGTCGCAAAAGGGCATGATGGCCACGTGCATCCCCCGTCCTCCGAGCCTACTGCCTCTCCACCGCCGGGGGTGAATGCTGCCACCATGAACAGCTTTTCATACTCTTGGTCTATGGTTATGGCCATGGTGGCTGCTTCTTGGATGCTGTTTTGA

mRNA sequence

ATGGCAGCTCGTACCTCGGCAGTTCTCAGCTTCGTGGTGGCGGTGCTGCTGCTCGTTTACGTCGCAAAAGGGCATGATGGCCACGTGCATCCCCCGTCCTCCGAGCCTACTGCCTCTCCACCGCCGGGGGTGAATGCTGCCACCATGAACAGCTTTTCATACTCTTGGTCTATGGTTATGGCCATGGTGGCTGCTTCTTGGATGCTGTTTTGA

Coding sequence (CDS)

ATGGCAGCTCGTACCTCGGCAGTTCTCAGCTTCGTGGTGGCGGTGCTGCTGCTCGTTTACGTCGCAAAAGGGCATGATGGCCACGTGCATCCCCCGTCCTCCGAGCCTACTGCCTCTCCACCGCCGGGGGTGAATGCTGCCACCATGAACAGCTTTTCATACTCTTGGTCTATGGTTATGGCCATGGTGGCTGCTTCTTGGATGCTGTTTTGA

Protein sequence

MAARTSAVLSFVVAVLLLVYVAKGHDGHVHPPSSEPTASPPPGVNAATMNSFSYSWSMVMAMVAASWMLF
Homology
[Close]
BLAST of Cp4.1LG01g03010 vs. TrEMBL
Match: A0A0A0KVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-13
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 1  MAARTSAVLSFVVAVLLLVYVAKGHDGHVHPPSSEPTASPPPGVNAATMNSFSYSWSMVM 60
          MAA  SAVLS V+  LLL+ VA  H+GH HPPSSE   +PPP  +AA +NS SY WSM M
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVAASWML 70
          AMVAASW++
Sbjct: 61 AMVAASWII 69

[Close]
BLAST of Cp4.1LG01g03010 vs. NCBI nr
Match: gi|700198567|gb|KGN53725.1| (hypothetical protein Csa_4G111600 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-13
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 1  MAARTSAVLSFVVAVLLLVYVAKGHDGHVHPPSSEPTASPPPGVNAATMNSFSYSWSMVM 60
          MAA  SAVLS V+  LLL+ VA  H+GH HPPSSE   +PPP  +AA +NS SY WSM M
Sbjct: 1  MAAPPSAVLSVVLVALLLICVANAHEGHAHPPSSEHHLAPPPQHSAAIINSLSYFWSMAM 60

Query: 61 AMVAASWML 70
          AMVAASW++
Sbjct: 61 AMVAASWII 69

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVS3_CUCSA6.9e-1362.32Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111600 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198567|gb|KGN53725.1|9.9e-1362.32hypothetical protein Csa_4G111600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009231 riboflavin biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function GO:0003935 GTP cyclohydrolase II activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03010.1Cp4.1LG01g03010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03010CsaV3_4G009590Cucumber (Chinese Long) v3cpecucB0512
Cp4.1LG01g03010Carg08077Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03010Melon (DHL92) v3.6.1cpemedB457
Cp4.1LG01g03010Melon (DHL92) v3.6.1cpemedB490
Cp4.1LG01g03010Melon (DHL92) v3.6.1cpemedB497
Cp4.1LG01g03010Silver-seed gourdcarcpeB0408
Cp4.1LG01g03010Silver-seed gourdcarcpeB1216
Cp4.1LG01g03010Silver-seed gourdcarcpeB1217
Cp4.1LG01g03010Cucumber (Chinese Long) v3cpecucB0498
Cp4.1LG01g03010Cucumber (Chinese Long) v3cpecucB0500
Cp4.1LG01g03010Cucumber (Chinese Long) v3cpecucB0582
Cp4.1LG01g03010Wax gourdcpewgoB0477
Cp4.1LG01g03010Wax gourdcpewgoB0519
Cp4.1LG01g03010Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03010Cucurbita pepo (Zucchini)cpecpeB238
Cp4.1LG01g03010Cucurbita pepo (Zucchini)cpecpeB260
Cp4.1LG01g03010Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG01g03010Cucumber (Gy14) v1cgycpeB0191
Cp4.1LG01g03010Cucumber (Gy14) v1cgycpeB0599
Cp4.1LG01g03010Cucumber (Gy14) v1cgycpeB1053
Cp4.1LG01g03010Cucumber (Gy14) v1cgycpeB1054
Cp4.1LG01g03010Cucurbita maxima (Rimu)cmacpeB136
Cp4.1LG01g03010Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03010Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03010Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03010Cucurbita moschata (Rifu)cmocpeB318
Cp4.1LG01g03010Cucurbita moschata (Rifu)cmocpeB488
Cp4.1LG01g03010Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03010Wild cucumber (PI 183967)cpecpiB398
Cp4.1LG01g03010Wild cucumber (PI 183967)cpecpiB400
Cp4.1LG01g03010Wild cucumber (PI 183967)cpecpiB410
Cp4.1LG01g03010Wild cucumber (PI 183967)cpecpiB472
Cp4.1LG01g03010Cucumber (Chinese Long) v2cpecuB401
Cp4.1LG01g03010Cucumber (Chinese Long) v2cpecuB403
Cp4.1LG01g03010Cucumber (Chinese Long) v2cpecuB411
Cp4.1LG01g03010Cucumber (Chinese Long) v2cpecuB472
Cp4.1LG01g03010Bottle gourd (USVL1VR-Ls)cpelsiB340
Cp4.1LG01g03010Bottle gourd (USVL1VR-Ls)cpelsiB351
Cp4.1LG01g03010Watermelon (Charleston Gray)cpewcgB352
Cp4.1LG01g03010Watermelon (Charleston Gray)cpewcgB345
Cp4.1LG01g03010Watermelon (Charleston Gray)cpewcgB403
Cp4.1LG01g03010Watermelon (97103) v1cpewmB382
Cp4.1LG01g03010Watermelon (97103) v1cpewmB391
Cp4.1LG01g03010Watermelon (97103) v1cpewmB421
Cp4.1LG01g03010Melon (DHL92) v3.5.1cpemeB394
Cp4.1LG01g03010Melon (DHL92) v3.5.1cpemeB419
Cp4.1LG01g03010Melon (DHL92) v3.5.1cpemeB425
Cp4.1LG01g03010Cucumber (Gy14) v2cgybcpeB503
Cp4.1LG01g03010Cucumber (Gy14) v2cgybcpeB505
Cp4.1LG01g03010Cucumber (Gy14) v2cgybcpeB518
Cp4.1LG01g03010Cucumber (Gy14) v2cgybcpeB941