Cp4.1LG01g03000.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03000.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 2125065 .. 2125289 (+)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

mRNA sequence

ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

Coding sequence (CDS)

ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

Protein sequence

MERKIKKRDTCKADRGSTYVDILEMETANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAPLEK
Homology
[Close]
BLAST of Cp4.1LG01g03000.1 vs. TrEMBL
Match: A0A0A0KWH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181210 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 25 METANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAP 72
          M TA+KF  LG RE RVGDLFDKTTS  L   STP GFG YEE+S P
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTP 47

[Close]
BLAST of Cp4.1LG01g03000.1 vs. NCBI nr
Match: gi|700198730|gb|KGN53888.1| (hypothetical protein Csa_4G181210 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 25 METANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAP 72
          M TA+KF  LG RE RVGDLFDKTTS  L   STP GFG YEE+S P
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTP 47

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03000.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03000.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWH4_CUCSA1.2e-0768.09Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181210 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03000.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03000.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198730|gb|KGN53888.1|1.7e-0768.09hypothetical protein Csa_4G181210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g03000Cp4.1LG01g03000gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g03000.1:cds:001Cp4.1LG01g03000.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g03000.1Cp4.1LG01g03000.1-proteinpolypeptide