Cp4.1LG01g03000 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03000
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 2125065 .. 2125289 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

mRNA sequence

ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

Coding sequence (CDS)

ATGGAAAGGAAGATTAAAAAGAGGGACACGTGTAAGGCGGATAGAGGAAGTACATACGTGGACATTCTAGAAATGGAAACAGCGAATAAATTCCCTGTCCTAGGGCGCCGCGAGCTACGTGTCGGCGATCTATTCGACAAGACAACTTCCATGCGCCTTTCTACTAGTTCCACTCCTCCTGGATTTGGCGAGTACGAGGAAAGCTCTGCTCCACTCGAGAAGTAG

Protein sequence

MERKIKKRDTCKADRGSTYVDILEMETANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAPLEK
Homology
[Close]
BLAST of Cp4.1LG01g03000 vs. TrEMBL
Match: A0A0A0KWH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181210 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 25 METANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAP 72
          M TA+KF  LG RE RVGDLFDKTTS  L   STP GFG YEE+S P
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTP 47

[Close]
BLAST of Cp4.1LG01g03000 vs. NCBI nr
Match: gi|700198730|gb|KGN53888.1| (hypothetical protein Csa_4G181210 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = 1 

Query: 25 METANKFPVLGRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAP 72
          M TA+KF  LG RE RVGDLFDKTTS  L   STP GFG YEE+S P
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTP 47

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWH4_CUCSA1.2e-0768.09Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181210 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03000 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198730|gb|KGN53888.1|1.7e-0768.09hypothetical protein Csa_4G181210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03000.1Cp4.1LG01g03000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03000Csa4G181210Cucumber (Chinese Long) v2cpecuB408
Cp4.1LG01g03000ClCG10G009850Watermelon (Charleston Gray)cpewcgB353
Cp4.1LG01g03000Bhi11G000876Wax gourdcpewgoB0477
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03000Bottle gourd (USVL1VR-Ls)cpelsiB340
Cp4.1LG01g03000Watermelon (Charleston Gray)cpewcgB345
Cp4.1LG01g03000Watermelon (97103) v1cpewmB382
Cp4.1LG01g03000Melon (DHL92) v3.5.1cpemeB394
Cp4.1LG01g03000Melon (DHL92) v3.5.1cpemeB419
Cp4.1LG01g03000Melon (DHL92) v3.5.1cpemeB422
Cp4.1LG01g03000Cucumber (Gy14) v2cgybcpeB513
Cp4.1LG01g03000Cucumber (Gy14) v2cgybcpeB941
Cp4.1LG01g03000Melon (DHL92) v3.6.1cpemedB457
Cp4.1LG01g03000Melon (DHL92) v3.6.1cpemedB490
Cp4.1LG01g03000Melon (DHL92) v3.6.1cpemedB494
Cp4.1LG01g03000Silver-seed gourdcarcpeB0408
Cp4.1LG01g03000Silver-seed gourdcarcpeB0527
Cp4.1LG01g03000Silver-seed gourdcarcpeB1032
Cp4.1LG01g03000Cucumber (Chinese Long) v3cpecucB0507
Cp4.1LG01g03000Cucumber (Chinese Long) v3cpecucB0582
Cp4.1LG01g03000Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03000Cucurbita pepo (Zucchini)cpecpeB260
Cp4.1LG01g03000Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG01g03000Cucumber (Gy14) v1cgycpeB0599
Cp4.1LG01g03000Cucumber (Gy14) v1cgycpeB0868
Cp4.1LG01g03000Cucurbita maxima (Rimu)cmacpeB136
Cp4.1LG01g03000Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03000Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03000Cucurbita moschata (Rifu)cmocpeB114
Cp4.1LG01g03000Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03000Cucurbita moschata (Rifu)cmocpeB488
Cp4.1LG01g03000Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03000Wild cucumber (PI 183967)cpecpiB407
Cp4.1LG01g03000Wild cucumber (PI 183967)cpecpiB472
Cp4.1LG01g03000Cucumber (Chinese Long) v2cpecuB472