Cp4.1LG01g02500.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g02500.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Reticulon-like protein
Location	Cp4.1LG01 : 2450337 .. 2455651 (+)
Sequence length	1656

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAGTTCTGATTCAGAGGGTTGTTGAAATTTCTGGGTGTTGGAATTCTCCGTTTTCTCCCTTCAGTTCTTAAATCTTCATCTTTCTCTCTGCTTTCAATTCTTGTTTTCTCTGAAACCCTAATCATGTCCATGGGATCCAATTCTACTCGTCGCATTTCTGTTCATCAAGTGCTCGGCGGTGGTCCTGGTACTTCTCTTCTCTGTACTGCTCTTTTTGCGATCTTTCTATTTTCGAATTGGAACTTACATTGATGCTTTAGAATTCCCTCCTCGATCTGGGTTTACTTCATGTTTCGATAATGAATTGTTTTGGTCTAATGTCGTTTTATCGCAATCTTTGTCTGAATTATGTGTTTCATTTGGCTGATTTTGTTCAATTCTATTAAATATGTTGTTGGTTCGCTAATTTAGCTATTGATGACAGTGGCTGATATGCTCCTATGGAAGAAATGGTGTGGTGGTGCTGTCATACTCACGTCTACAACTGCTTTGTGGTACCTGTTTGAAAGAGCCGATTACAACTTCTTATCTTTTGTTGCCAATGTTCTATTGCTTCTTGTCCTCATTCTTTTCGTCTGGGCCAAATCTGCTTCCCTTCTCAATAGGTACTTTGACTCTTCCTTCTGCCAGCTTTTAGTGCTTTACATAGTTTTATTTTCTAATCTCCACTTCTTGGGTGGAAGTTTGTGGATGCGTTATGGTTGTTTTAGGGACGATGAATCAAAAGTAAATAACATACATTGTAAAAGAGAACCATTTTATTGTGCAAAATCTTGAGAATAGTTTGTTTGATCAAGGGATGACGAAACGGTCAGGGTTTGAAACTGCAGCCCATATACAGTTCTGTACAAACTTGGACTCCTTTTTGTGGAACCATTTGTGTAAGAGAAGAACATTGTCAAATTTTTCGTTGGAGAAGTAATCGTGTATTTGAGATAATATGACTTAGATTGAAATGGAATGTATACATTCTCAAGGCTTGAGTTCAAATGGACGTAGAGTAAAAGTTACCTTCTTTTGTGATTCAGACCTCTGCCTCCGCTTCCTGATCTGGAAATTTCTGAGGAATCTGTTTCGATAGTTGCTGATGAACTGCGATTGTGGGTCAATTTTGCACTGTCAATTGCACGCGATATTGCAATAGGAAGAAACCTTAAGCTCTTTCTTCAGGTTAGGGTAATCACTTGTCTTATCGTCTGTGATGACCGCGACTTGTGTGTTAATTTATTCACGTTCTCAGGTTGCTCTTGGACTATGGATTTCATCATTCATTGGCAGATTCTTCAATTTTCTTACACTGGTCTATTTTGGTGAGTTCTTTGGGGCTCTCATTTCTATGTAATCAGCGGTTCAAAAATCATATCTGTTGCTATCTTCAACAATTTATGCATTCTATCAATATATTTGTTTCAGGGGTCCTTCTCAGTCTTTCAGCTCCGCTAGTGTACGATAAGTACCAGGATCCCATTGATGAAAAGTTGTGTGTAACACATAGATATGTACAAATGCAATACAGGAAGCTTGATGAGAATGTCTTAAGGAAGTTACCATTACCCTTAAACAAGGAGAAGAAGATGCAATAGGCACAGCACTCGCTTGATGATCAGTAACTTCAAAAGAAGTGAGCTGGATCTACCTTTTTCATAATGCTCTAACTCCATTTTTGTATTCTGATGTGTCCGATGAATATTATTTCAGATCAACATAAAGTGAGTGTTATGTACTTTTATTCTGATGGCTTGTAAAAAAATCTCTTATTGATTCCTTTGTTGTGTGTGTTTCCTTCCTTCAATTTGAGCATCAGCTGATTTCTTTCTGTTGTAATTTAAATACCATCTATTCCTTTATCAAGGATCGTTAGATCTTGAAACTCGTGAATAAGTTCTGGTAGCTTGTGAGATTAGACTACTACCTATTAAGTTTACATGTCCTGCATATTAATATCTCAGAAGATTTCACAAAATTTTTATCTAGTTTTCAACTTTTTAGAAATATTATGGCTAATGGTTTAGTTAATAGTAAATTTTCTTTTACATGAAGATTTCATTTTGCTTGATTATATAGATGCATTATTAACTCGTTACAAAATCGATTTCCTCTCCTCTTGCCCTGGCTTGTTTGAGAAATAGAAATAGATTTACTTTGATTGTTTGTCTCTTGCCTTGCTTTAATCAAGTTAGCTTCCGCTATTTTAAGAGTTTGTCGATCTCCTCGTAGATCAACGTTCTTACATAGTAGTCTTTTCCATATCATGTATTAAAACGGGGATCTCATTATTACCCTTTTTTTTTAGCAAAACCACCCATCTGAGTCATCCTTAACCATTGGTCACTAATTATGATTAACTGAAGTTGAATTCTTGCTTTGAAATTCATTTTCTAGGCCGAAGTAACCAATCTATCTCGTAGTAAAAGATTTAAGTGGGTGATATTATACTGTTCTTACAAGTCTTAGATGGGCTGACCTGATGCTTGAGTGTGTTCTATACTGCAATGGTTTTTTCCAATTTAGTTCAACTAATCATTGCTTCACTGGAAATTTAAGATGATGATGAGTTTGTGTTTGGTAAGAAAATTTCCATATTGAGATTTCTTTCTGGGGCAAATATGACTTGTTATACCTTGATTTTTGTTGGTTGCTGAAAAACTTTAGTTTAGTTTCTTTGTTCATCAAGTGTTGGGTTTTCAAATTTGCATCTGATTTGCTTTGGTTTTACTTGTTGCTACTTTGAAGTACGCAGAGGCACATTGGCTTTCAACAGAGGACGATCAGTAGATTTGAAAATTTCGATCAGAGACATTGAGATTGCTTTTGAATGAGATGTACTTCAGCATTCTAGATCTTTTAGAAAGTTGTGGTATATAACTTAACATAAATGTATCCTGACTTTGACTTTGGGCTGAAAACTAAAAGCGTTAATGTTCGGTTTTGGATCGAAATGGTATGGTGTCTTGTAATCACTAGTGTTTGGTTTTGGATTGAACTTTGTTGTTACAGCTGAATGATTTTGTGATGTAGTTTTTTGGTTTGTGTTCGAGTTCTGCATACGCTTCGGTGTAGATACTCGAACATAGCATCTCGTAACCGATGGAAACTAAAGCCACTTAAACTCGATGTTCAATTAGCAGCACCTTGATCAGTAGAAGACTGAAAATTTATTTATCTTAACATGTTGCTAAGGCTGACTAGTTCCTTTGCCTTTCAGGTGTAATGACAAAGAAAAATGACCCATCTCATGTGACACACATGTAAGTTCCTCCTGAACCTCACTTTTAAGGTAAAACGTCTCGCATCTAGTAGACAATAAAAAAATTTATCAAAGACTCGCATGGAATAGAGAAATTATTATTACTGGGACACTCCTGCACCAAAGCACATGTATTTTTGTCTCCTGGTTTGTATGGGGCTCTGCAAAGGACGCAACTGTTCATATATATTTATTTAAGCTGTCCAAGTCATTTACGGTTCTTTATAAAATCCTCAAGTATCTTAGTTATAACCTTTGAGTTTGGTACATCCTGAATTATATATATATATTTCTCTGGAAAGTTGTAAGTAATGGGCACATGGTCTGTGTGCTAAACCATAGGACGCACAAAAGGTAGCAGAAAAAGGCCAAAAGGATAGAGAATTTATTGCACTTTTTAAGGGTGTTTGGTTTTTTTGTATTAGATTAATGAATTAGGAGTATACTTGTTCCAAGTTTTGGATTTGATAATCTTACATCAAAGCATAATACCTTTCATAGATCACAAACTCATAAACCGCTAGCAAATATTGTCCTTTTTGGGCTTTCCTTTCGAGCTTCCCCTCAAGGCTTTAAAATGCATCTGCTAGGGAAAGGTTTTCGCACTCTTATAAAGGTGTTTCGTTCTCCTCCCCAACCAATGTGGGTATCACAATCCACCCCTTTTCGGGGCCTAGAGTCCTCACTGGCACTCGTTCCTTTCTCCAATCGATGTGGGACCATCGTCTCAGCGTCCTTACTGGCACTCCGCCTCGTGTCTATCTCCCTTCGGGGAATAGCCTCCTCGTTGGCTCTGATACCATTTGTAATGGCCCAACCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTTCCTTTTGGGCTTTCCCTCAAGGCTTTAAAACACGTATGCTAGGGAAAGGTTTCCACACCTTTATAAAGAGTGCTTCGTTCTCCTCCCTAACCAATGTGGGATATCACAATCCACCCCCCTTCAGGGCCCAGCATCCTTGCTAGCACTCGTTCCTTTCTCCAATCGATGTGGGACCACCACCAAATCTACCCCCTTCGGGGAACAGCCTCCTTGCTGGCACATCACAGAGTGTCTGCCTCTCATACTATTTGTAACAGCCGAAGCCCACCGCTAGCAAGTATTGTCCTCTTTGGGCTTTCTCTTTTGAGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAATGTTTCTACACCTTTATAAAGGGTGTTTCGCTTTTCTCCCGAACCAATGTGGGACATCACACCAAGAATCACATCAAAAGCTTTTGCTACACATTCAAATTTTCCAATTCCTGACTAAGACAACACAGATTCAGATTTCCTTTTAGGAAGCTTTTTGCAGTCAAATTCTTTCTAGTGTTCATAATTGTTACGGAGAAGTGAATTTGAAGCTGCTGATTGATAGGGATAGAGAGATAAATAATGCTTTAAGTAGACGGAAGCATCATTCATGTTTTGTTTTGATTGGTCCAAACGCTTTTTAGATCCAAAGTACGAACGGTGAAGGCAAGGAGCATGCATTCATGCGTCTCATAGGGAGACCAACAACACTTTCTGGACAACAGGTTGGCCTTACAGACCCATTATATCAATTTCATCGCTTTCAAAATCACACTCTTTTCTGATCAACAAAACTTACACTATCAATCTCAGTTTGATCATGATGAATGCTTCTCAAATTCCATGTTTTTCATTTGTTTTTTGCCCATTTGATCACCATTCTTCAAGAGTATGCTTATGTTCTTACCATTTCTTTATGGGATTTGAAAATTTGATAGTGAAAAAGACAGGGTTTTAGGGATGGAATCTTTGACAGTGCAGTGTGGGAATCAGGGCTTGGGTTGGTGTTGGTGTTGGTGTTGGTGGTGGGGTGGTCCTATAAATGCTTATAGGACCATCCCATATTTATCATCTTTCTAAGGTCCATAATTTCTTTTTTCTTTTTTCTTTTTTCTCAGGATAAATACTTTATTTATTTATTTATTTGAATCACAAGTATATGTTTTAAAATATATTATTTTACAGAAACATTTACACCCCCAAACAT

mRNA sequence

ATAAAGTTCTGATTCAGAGGGTTGTTGAAATTTCTGGGTGTTGGAATTCTCCGTTTTCTCCCTTCAGTTCTTAAATCTTCATCTTTCTCTCTGCTTTCAATTCTTGTTTTCTCTGAAACCCTAATCATGTCCATGGGATCCAATTCTACTCGTCGCATTTCTGTTCATCAAGTGCTCGGCGGTGGTCCTGTGGCTGATATGCTCCTATGGAAGAAATGGTGTGGTGGTGCTGTCATACTCACGTCTACAACTGCTTTGTGGTACCTGTTTGAAAGAGCCGATTACAACTTCTTATCTTTTGTTGCCAATGTTCTATTGCTTCTTGTCCTCATTCTTTTCGTCTGGGCCAAATCTGCTTCCCTTCTCAATAGACCTCTGCCTCCGCTTCCTGATCTGGAAATTTCTGAGGAATCTGTTTCGATAGTTGCTGATGAACTGCGATTGTGGGTCAATTTTGCACTGTCAATTGCACGCGATATTGCAATAGGAAGAAACCTTAAGCTCTTTCTTCAGGTTGCTCTTGGACTATGGATTTCATCATTCATTGGCAGATTCTTCAATTTTCTTACACTGGTCTATTTTGGGGTCCTTCTCAGTCTTTCAGCTCCGCTAGTGTACGATAAGTACCAGGATCCCATTGATGAAAAGTTGTGTGTAACACATAGATATGTACAAATGCAATACAGGAAGCTTGATGAGAATGTCTTAAGGAAGTTACCATTACCCTTAAACAAGGAGAAGAAGATGCAATAGGCACAGCACTCGCTTGATGATCAGTAACTTCAAAAGAATACGCAGAGGCACATTGGCTTTCAACAGAGGACGATCAGTAGATTTGAAAATTTCGATCAGAGACATTGAGATTGCTTTTGAATGAGATGTACTTCAGCATTCTAGATCTTTTAGAAAGTTGTGGTATATAACTTAACATAAATGTATCCTGACTTTGACTTTGGGCTGAAAACTAAAAGCGTTAATGTTCGGTTTTGGATCGAAATGGTATGGTGTCTTGTAATCACTAGTGTTTGGTTTTGGATTGAACTTTGTTGTTACAGCTGAATGATTTTGTGATGTAGTTTTTTGGTTTGTGTTCGAGTTCTGCATACGCTTCGGTGTAGATACTCGAACATAGCATCTCGTAACCGATGGAAACTAAAGCCACTTAAACTCGATGTTCAATTAGCAGCACCTTGATCAGTAGAAGACTGAAAATTTATTTATCTTAACATGTTGCTAAGGCTGACTAGTTCCTTTGCCTTTCAGGTGTAATGACAAAGAAAAATGACCCATCTCATGTGACACACATATCCAAAGTACGAACGGTGAAGGCAAGGAGCATGCATTCATGCGTCTCATAGGGAGACCAACAACACTTTCTGGACAACAGTGAAAAAGACAGGGTTTTAGGGATGGAATCTTTGACAGTGCAGTGTGGGAATCAGGGCTTGGGTTGGTGTTGGTGTTGGTGTTGGTGGTGGGGTGGTCCTATAAATGCTTATAGGACCATCCCATATTTATCATCTTTCTAAGGTCCATAATTTCTTTTTTCTTTTTTCTTTTTTCTCAGGATAAATACTTTATTTATTTATTTATTTGAATCACAAGTATATGTTTTAAAATATATTATTTTACAGAAACATTTACACCCCCAAACAT

Coding sequence (CDS)

ATGTCCATGGGATCCAATTCTACTCGTCGCATTTCTGTTCATCAAGTGCTCGGCGGTGGTCCTGTGGCTGATATGCTCCTATGGAAGAAATGGTGTGGTGGTGCTGTCATACTCACGTCTACAACTGCTTTGTGGTACCTGTTTGAAAGAGCCGATTACAACTTCTTATCTTTTGTTGCCAATGTTCTATTGCTTCTTGTCCTCATTCTTTTCGTCTGGGCCAAATCTGCTTCCCTTCTCAATAGACCTCTGCCTCCGCTTCCTGATCTGGAAATTTCTGAGGAATCTGTTTCGATAGTTGCTGATGAACTGCGATTGTGGGTCAATTTTGCACTGTCAATTGCACGCGATATTGCAATAGGAAGAAACCTTAAGCTCTTTCTTCAGGTTGCTCTTGGACTATGGATTTCATCATTCATTGGCAGATTCTTCAATTTTCTTACACTGGTCTATTTTGGGGTCCTTCTCAGTCTTTCAGCTCCGCTAGTGTACGATAAGTACCAGGATCCCATTGATGAAAAGTTGTGTGTAACACATAGATATGTACAAATGCAATACAGGAAGCTTGATGAGAATGTCTTAAGGAAGTTACCATTACCCTTAAACAAGGAGAAGAAGATGCAATAG

Protein sequence

MSMGSNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRKLDENVLRKLPLPLNKEKKMQ

Homology

[Close]

BLAST of Cp4.1LG01g02500.1 vs. Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.6e-58
Identity = 118/203 (58.13%), Postives = 150/203 (73.89%), Query Frame = 1


Query: 6   NSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLL 65
           +S+ R+SVHQ LG G VAD+LLW+   G  ++L S+T  W+LFERA YN LSFV+NVLLL
Sbjct: 6   SSSSRVSVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLL 65

Query: 66  LVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLK 125
           LV I F+WAKSA++LNRPLPP+P++EI EE  +  AD+LR+W+N+ LSIA DI I RN  
Sbjct: 66  LVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPI 125

Query: 126 LFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQ 185
             LQV+L LW  S++G   N LTLVY GVLLSLS P+VY+KYQD IDEK+  T ++V+  
Sbjct: 126 RLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVR-- 185

Query: 186 YRKLDENVLRKLPLPLNKEKKMQ 209
                 N+ RK PLP+NKEKK Q
Sbjct: 186 ------NISRKFPLPINKEKKHQ 200

[Close]

BLAST of Cp4.1LG01g02500.1 vs. Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 9.7e-56
Identity = 110/198 (55.56%), Postives = 148/198 (74.75%), Query Frame = 1


Query: 12  SVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVLILF 71
           SVHQ +  G VAD+++WK   GG ++L STT LW+LFE+  Y+F  FV N  LL V+ILF
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query: 72  VWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQVA 131
           +WAKSA L NRP+P LP+LEI+EE V +VAD +R+W+N  L++AR+I +GRN K   +V+
Sbjct: 64  LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVS 123

Query: 132 LGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRKLDE 191
           + LW  SF+G F NFLT++Y GV+LSL  P +Y++YQD IDEKL +THR +Q QYRK+DE
Sbjct: 124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDE 183

Query: 192 NVLRK-LPLPLNKEKKMQ 209
            +L+K +  P NK KKMQ
Sbjct: 184 RLLQKIIAKPTNKIKKMQ 201

[Close]

BLAST of Cp4.1LG01g02500.1 vs. Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 79/197 (40.10%), Postives = 122/197 (61.93%), Query Frame = 1


Query: 9   RRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVL 68
           R   VH+VLGGG  AD+ LW+       +L   TA+W LFE  +Y+ LS + ++ +L + 
Sbjct: 55  REKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALG 114

Query: 69  ILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFL 128
            LF+W+ + +L+N+  P +P++ + EE+  +VA  LR  +N A  I R IA+GR+LK FL
Sbjct: 115 GLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174

Query: 129 QVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRK 188
            V +GLWI S +G +FNFLTLVY   ++  + P++Y+K++D +D       + +Q QY  
Sbjct: 175 MVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVV 234

Query: 189 LDENVLRKLPLPLNKEK 206
            DE VL K+P+   K K
Sbjct: 235 FDEKVLSKIPIASLKAK 251

[Close]

BLAST of Cp4.1LG01g02500.1 vs. Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 84/204 (41.18%), Postives = 126/204 (61.76%), Query Frame = 1


Query: 9   RRISVHQVLGGGPVADMLLWK--KWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLL 68
           R   VH+VLGGG  AD+ +WK  K  GG  +L   TA W +FE  +Y+ L+ + +V++++
Sbjct: 76  REQPVHKVLGGGKPADIFMWKNKKMSGG--VLGGATAAWVVFELMEYHLLTLLCHVMIVV 135

Query: 69  VLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKL 128
           + +LF+W+ +   +N+  P +P++ I EE +  +A  LR+ +N   S  R+IA GR+LK 
Sbjct: 136 LAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKK 195

Query: 129 FLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQ---DPIDEKLCVTHRYVQ 188
           FL    GLW+ S +G  FNFLTL Y  ++L  + PL YDKY+   DP+ EK  +    ++
Sbjct: 196 FLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIE---LK 255

Query: 189 MQYRKLDENVLRKLPL-PLNKEKK 207
            QY  LDE VL K+PL PL  +KK
Sbjct: 256 KQYAVLDEKVLSKIPLGPLKNKKK 274

[Close]

BLAST of Cp4.1LG01g02500.1 vs. Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 75/197 (38.07%), Postives = 124/197 (62.94%), Query Frame = 1


Query: 9   RRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVL 68
           R+I+VHQ +GGG  AD+LLW++      ++  +T  W +FE +   FLS  ++VLL++++
Sbjct: 28  RQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIM 87

Query: 69  ILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFL 128
           I FV A+ ++  NR L  LP+L +SEE V+  A   R+ +N  L +A D+ +G + +LF 
Sbjct: 88  ISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFF 147

Query: 129 QVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRK 188
           +V + LW+ S IG + +  TL+Y G +LS++ P +Y KYQ  +D+     HR +   Y+ 
Sbjct: 148 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKI 207

Query: 189 LDENVLRKLPLPLNKEK 206
           +DENV+ +L   L+K+K
Sbjct: 208 VDENVISRLSWSLSKDK 224

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TrEMBL
Match: A0A0A0L980_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_3G199610 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.6e-95
Identity = 182/206 (88.35%), Postives = 192/206 (93.20%), Query Frame = 1


Query: 3   MGSNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANV 62
           +GSNS+RRISVHQ LGGG VAD+LLWKKWCGG V+LTS TALWYLFERA YNFLSFVANV
Sbjct: 2   VGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVANV 61

Query: 63  LLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGR 122
           LLLLV+ILF WAKSASLLNRPLPPLPDLEISEESVS+VA+ELR  +NFALSIARDIAIGR
Sbjct: 62  LLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFCINFALSIARDIAIGR 121

Query: 123 NLKLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYV 182
           NLKLFLQVAL LWI SFIG FFNFLTLVY GVLLSLSAP+VYDKYQD IDEKLCVTHRY 
Sbjct: 122 NLKLFLQVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYA 181

Query: 183 QMQYRKLDENVLRKLPLPLNKEKKMQ 209
           QMQYRKLDENVLRK+PLPLNKEKKMQ
Sbjct: 182 QMQYRKLDENVLRKIPLPLNKEKKMQ 207

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TrEMBL
Match: A0A061E058_THECC (Reticulon-like protein OS=Theobroma cacao GN=TCM_007136 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.3e-83
Identity = 159/203 (78.33%), Postives = 179/203 (88.18%), Query Frame = 1


Query: 5   SNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLL 64
           SN   R+SVHQ LGGGPVAD+LLW+KWCGG V+L S T LWYLFERA YNFLSFVANVLL
Sbjct: 50  SNPIPRLSVHQALGGGPVADVLLWRKWCGGVVMLASATTLWYLFERAGYNFLSFVANVLL 109

Query: 65  LLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNL 124
           LLV+ILF WAKSASLLNRPLPPLP+LEISE++V  VADEL++W+N+ALSIA DIAIGRNL
Sbjct: 110 LLVVILFFWAKSASLLNRPLPPLPNLEISEKTVGKVADELQVWINYALSIAHDIAIGRNL 169

Query: 125 KLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQM 184
           KLFL+VA+GLW+ S+IG  FNFLTLVY GV+LSLS PLVYDKYQ  I+EKL VTHR +QM
Sbjct: 170 KLFLEVAVGLWLLSYIGSLFNFLTLVYIGVILSLSVPLVYDKYQHHINEKLSVTHRIIQM 229

Query: 185 QYRKLDENVLRKLPLPLNKEKKM 208
           QYRK+DE VLRKLPLP NKEKKM
Sbjct: 230 QYRKIDETVLRKLPLPSNKEKKM 252

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TrEMBL
Match: D7UC00_VITVI (Reticulon-like protein OS=Vitis vinifera GN=VIT_03s0180g00170 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.9e-77
Identity = 143/204 (70.10%), Postives = 174/204 (85.29%), Query Frame = 1


Query: 5   SNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLL 64
           S+   RISVHQ LGGG VAD LLW++WCG AV L S ++LW+LFERA YN LSFVANV+L
Sbjct: 4   SDHPSRISVHQALGGGSVADFLLWRRWCGAAVCLVSASSLWFLFERAGYNLLSFVANVVL 63

Query: 65  LLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNL 124
           LLV+ILF+WAKSAS+LNRPLPPLPD+EISEESV   AD +R+W+N+ALS+ARDIA+GRN+
Sbjct: 64  LLVVILFLWAKSASILNRPLPPLPDMEISEESVVKAADVIRVWINYALSVARDIAVGRNV 123

Query: 125 KLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQM 184
           KLFLQVA GLW+ S+IG  FNFLTLVY GV+LSLS P++YDKYQD ID+KL VTHR VQ 
Sbjct: 124 KLFLQVAFGLWVVSYIGSLFNFLTLVYIGVVLSLSVPVLYDKYQDHIDDKLRVTHRVVQT 183

Query: 185 QYRKLDENVLRKLPLPLNKEKKMQ 209
           QY+K+D+ +LRK+P+P+N  KK Q
Sbjct: 184 QYKKIDDKILRKIPMPINMGKKTQ 207

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TrEMBL
Match: W9S660_9ROSA (Reticulon-like protein OS=Morus notabilis GN=L484_027478 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.8e-75
Identity = 144/204 (70.59%), Postives = 171/204 (83.82%), Query Frame = 1


Query: 5   SNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLL 64
           S+ +RR SVHQ  G G VAD+LLWKKW  G V+L S TALW+LFERA YN LSFV+NVLL
Sbjct: 4   SSPSRRFSVHQAFGDGFVADVLLWKKWSVGVVLLVSATALWFLFERAGYNPLSFVSNVLL 63

Query: 65  LLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNL 124
           LLV+ILF WAKSASLLNRPLPPLPDLEISE SV + AD LR+WVN  +S ARDIAIGRN 
Sbjct: 64  LLVVILFFWAKSASLLNRPLPPLPDLEISEASVMMAADVLRVWVNRVMSTARDIAIGRNW 123

Query: 125 KLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQM 184
           KLFLQVA GLW++S++G  FNFLTL Y  VLLSLS P++YDKYQD ID+K+CVTH+ +Q 
Sbjct: 124 KLFLQVAFGLWVASYVGSLFNFLTLAYIAVLLSLSVPVLYDKYQDHIDDKVCVTHKLIQT 183

Query: 185 QYRKLDENVLRKLPLPLNKEKKMQ 209
           QYRK+DE++ +K+P+PLNKEKK+Q
Sbjct: 184 QYRKIDESLRKKIPIPLNKEKKVQ 207

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TrEMBL
Match: A0A067F9F1_CITSI (Reticulon-like protein OS=Citrus sinensis GN=CISIN_1g0285691mg PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-74
Identity = 145/204 (71.08%), Postives = 172/204 (84.31%), Query Frame = 1


Query: 5   SNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLL 64
           S+S  RISVHQ LGGG VAD+LLW+K CGG V+L S+T LW+LFERA YNFLSFV+NVLL
Sbjct: 4   SHSYDRISVHQALGGGSVADVLLWRKRCGGVVLLGSSTILWFLFERAGYNFLSFVSNVLL 63

Query: 65  LLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNL 124
           LLV ILF W KSASLLNRPLPPLPDLEIS++SV   ADE+++WVN ALSIARDIA+GRNL
Sbjct: 64  LLVAILFFWGKSASLLNRPLPPLPDLEISDQSVVKAADEIQVWVNHALSIARDIAMGRNL 123

Query: 125 KLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQM 184
             FLQVA  LW+ S++G  FNFLTLVY GVLLSLS P++Y+K+QD IDEKLC   R +QM
Sbjct: 124 SRFLQVAFLLWVVSYVGSVFNFLTLVYIGVLLSLSVPVLYEKFQDHIDEKLCKIQRVIQM 183

Query: 185 QYRKLDENVLRKLPLPLNKEKKMQ 209
           QYRK+DE++L+K+PLP NK+KK Q
Sbjct: 184 QYRKIDESLLKKIPLPQNKQKKTQ 207

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TAIR10
Match: AT2G15280.1 (AT2G15280.1 Reticulon family protein)

HSP 1 Score: 218.0 bits (554), Expect = 5.5e-57
Identity = 110/198 (55.56%), Postives = 148/198 (74.75%), Query Frame = 1


Query: 12  SVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVLILF 71
           SVHQ +  G VAD+++WK   GG ++L STT LW+LFE+  Y+F  FV N  LL V+ILF
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query: 72  VWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQVA 131
           +WAKSA L NRP+P LP+LEI+EE V +VAD +R+W+N  L++AR+I +GRN K   +V+
Sbjct: 64  LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVS 123

Query: 132 LGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRKLDE 191
           + LW  SF+G F NFLT++Y GV+LSL  P +Y++YQD IDEKL +THR +Q QYRK+DE
Sbjct: 124 VVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDE 183

Query: 192 NVLRK-LPLPLNKEKKMQ 209
            +L+K +  P NK KKMQ
Sbjct: 184 RLLQKIIAKPTNKIKKMQ 201

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TAIR10
Match: AT3G19460.2 (AT3G19460.2 Reticulon family protein)

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-47
Identity = 110/221 (49.77%), Postives = 140/221 (63.35%), Query Frame = 1


Query: 22  VADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVLILFVWAKSASLLN 81
           VAD+LLW+   G  ++L S+T  W+LFERA YN LSFV+NVLLLLV I F+WAKSA++LN
Sbjct: 6   VADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLN 65

Query: 82  RPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRN------------------ 141
           RPLPP+P++EI EE  +  AD+LR+W+N+ LSIA DI I RN                  
Sbjct: 66  RPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVFFHHLWQTICC 125

Query: 142 LKLFLQVA-LGLWIS---------------SFIGRFFNFLTLVYFGVLLSLSAPLVYDKY 201
           + LFL V  L + IS               S++G   N LTLVY GVLLSLS P+VY+KY
Sbjct: 126 IFLFLHVMYLTVHISFVFAVKQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKY 185

Query: 202 QDPIDEKLCVTHRYVQMQYRKLDENVLRKLPLPLNKEKKMQ 209
           QD IDEK+  T ++V+        N+ RK PLP+NKEKK Q
Sbjct: 186 QDHIDEKVNSTSKFVR--------NISRKFPLPINKEKKHQ 218

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TAIR10
Match: AT2G46170.1 (AT2G46170.1 Reticulon family protein)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-36
Identity = 79/197 (40.10%), Postives = 122/197 (61.93%), Query Frame = 1


Query: 9   RRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVL 68
           R   VH+VLGGG  AD+ LW+       +L   TA+W LFE  +Y+ LS + ++ +L + 
Sbjct: 55  REKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALG 114

Query: 69  ILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFL 128
            LF+W+ + +L+N+  P +P++ + EE+  +VA  LR  +N A  I R IA+GR+LK FL
Sbjct: 115 GLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174

Query: 129 QVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRK 188
            V +GLWI S +G +FNFLTLVY   ++  + P++Y+K++D +D       + +Q QY  
Sbjct: 175 MVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVV 234

Query: 189 LDENVLRKLPLPLNKEK 206
            DE VL K+P+   K K
Sbjct: 235 FDEKVLSKIPIASLKAK 251

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TAIR10
Match: AT4G23630.1 (AT4G23630.1 VIRB2-interacting protein 1)

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-35
Identity = 84/204 (41.18%), Postives = 126/204 (61.76%), Query Frame = 1


Query: 9   RRISVHQVLGGGPVADMLLWK--KWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLL 68
           R   VH+VLGGG  AD+ +WK  K  GG  +L   TA W +FE  +Y+ L+ + +V++++
Sbjct: 76  REQPVHKVLGGGKPADIFMWKNKKMSGG--VLGGATAAWVVFELMEYHLLTLLCHVMIVV 135

Query: 69  VLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKL 128
           + +LF+W+ +   +N+  P +P++ I EE +  +A  LR+ +N   S  R+IA GR+LK 
Sbjct: 136 LAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKK 195

Query: 129 FLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQ---DPIDEKLCVTHRYVQ 188
           FL    GLW+ S +G  FNFLTL Y  ++L  + PL YDKY+   DP+ EK  +    ++
Sbjct: 196 FLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIE---LK 255

Query: 189 MQYRKLDENVLRKLPL-PLNKEKK 207
            QY  LDE VL K+PL PL  +KK
Sbjct: 256 KQYAVLDEKVLSKIPLGPLKNKKK 274

[Close]

BLAST of Cp4.1LG01g02500.1 vs. TAIR10
Match: AT5G41600.1 (AT5G41600.1 VIRB2-interacting protein 3)

HSP 1 Score: 134.8 bits (338), Expect = 6.1e-32
Identity = 78/204 (38.24%), Postives = 125/204 (61.27%), Query Frame = 1


Query: 9   RRISVHQVLGGGPVADMLLW--KKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLL 68
           R   VH+VLGGG  AD+ LW  KK  GG  +L + TA W LFE  +Y+ L+F+ +  +  
Sbjct: 55  REKPVHKVLGGGKPADIFLWRNKKVSGG--VLGAVTASWVLFELFEYHLLAFLCHFAIFA 114

Query: 69  VLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKL 128
           +  LF+W+ + + +++  P +P++ I E+ +  +   LR+ +N  L++ R+IA G+++K 
Sbjct: 115 LAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKK 174

Query: 129 FLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQY 188
           F+ V  GLW+ S IG  +NFLTL Y   +L  + P++Y+KY+D +D       R ++ QY
Sbjct: 175 FILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQY 234

Query: 189 RKLDENVLRKL--PLP---LNKEK 206
             LDE VLRK+   +P   LNK+K
Sbjct: 235 AVLDEKVLRKVISKIPRGALNKKK 256

[Close]

BLAST of Cp4.1LG01g02500.1 vs. NCBI nr
Match: gi|659112323|ref|XP_008456165.1| (PREDICTED: reticulon-like protein B11 isoform X1 [Cucumis melo])

HSP 1 Score: 360.1 bits (923), Expect = 2.5e-96
Identity = 183/206 (88.83%), Postives = 193/206 (93.69%), Query Frame = 1


Query: 3   MGSNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANV 62
           +GSNS+RRISVHQ LGGG VAD+LLWKKWCGG V+LTS TALWYLFERA YNFLSFVANV
Sbjct: 2   VGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVANV 61

Query: 63  LLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGR 122
           LLLLV+ILF WAKSASLLNRPLPPLPDLEISEESVS+VA+ELR W+NFALSIARDIAIGR
Sbjct: 62  LLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFWINFALSIARDIAIGR 121

Query: 123 NLKLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYV 182
           NLKLFLQVAL LWI SFIG FFNFLTLVY GVLLSLSAP+VYDKYQD IDEKLCVTHRY 
Sbjct: 122 NLKLFLQVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYA 181

Query: 183 QMQYRKLDENVLRKLPLPLNKEKKMQ 209
           QMQYRKLDENVLRK+PLPLNKEKKMQ
Sbjct: 182 QMQYRKLDENVLRKIPLPLNKEKKMQ 207

[Close]

BLAST of Cp4.1LG01g02500.1 vs. NCBI nr
Match: gi|778680027|ref|XP_004140714.2| (PREDICTED: reticulon-like protein B11 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 8.1e-95
Identity = 182/206 (88.35%), Postives = 192/206 (93.20%), Query Frame = 1


Query: 3   MGSNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANV 62
           +GSNS+RRISVHQ LGGG VAD+LLWKKWCGG V+LTS TALWYLFERA YNFLSFVANV
Sbjct: 2   VGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVANV 61

Query: 63  LLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGR 122
           LLLLV+ILF WAKSASLLNRPLPPLPDLEISEESVS+VA+ELR  +NFALSIARDIAIGR
Sbjct: 62  LLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFCINFALSIARDIAIGR 121

Query: 123 NLKLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYV 182
           NLKLFLQVAL LWI SFIG FFNFLTLVY GVLLSLSAP+VYDKYQD IDEKLCVTHRY 
Sbjct: 122 NLKLFLQVALALWIVSFIGSFFNFLTLVYIGVLLSLSAPIVYDKYQDHIDEKLCVTHRYA 181

Query: 183 QMQYRKLDENVLRKLPLPLNKEKKMQ 209
           QMQYRKLDENVLRK+PLPLNKEKKMQ
Sbjct: 182 QMQYRKLDENVLRKIPLPLNKEKKMQ 207

[Close]

BLAST of Cp4.1LG01g02500.1 vs. NCBI nr
Match: gi|590686937|ref|XP_007042524.1| (Reticulon family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-83
Identity = 159/203 (78.33%), Postives = 179/203 (88.18%), Query Frame = 1


Query: 5   SNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLL 64
           SN   R+SVHQ LGGGPVAD+LLW+KWCGG V+L S T LWYLFERA YNFLSFVANVLL
Sbjct: 50  SNPIPRLSVHQALGGGPVADVLLWRKWCGGVVMLASATTLWYLFERAGYNFLSFVANVLL 109

Query: 65  LLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNL 124
           LLV+ILF WAKSASLLNRPLPPLP+LEISE++V  VADEL++W+N+ALSIA DIAIGRNL
Sbjct: 110 LLVVILFFWAKSASLLNRPLPPLPNLEISEKTVGKVADELQVWINYALSIAHDIAIGRNL 169

Query: 125 KLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQM 184
           KLFL+VA+GLW+ S+IG  FNFLTLVY GV+LSLS PLVYDKYQ  I+EKL VTHR +QM
Sbjct: 170 KLFLEVAVGLWLLSYIGSLFNFLTLVYIGVILSLSVPLVYDKYQHHINEKLSVTHRIIQM 229

Query: 185 QYRKLDENVLRKLPLPLNKEKKM 208
           QYRK+DE VLRKLPLP NKEKKM
Sbjct: 230 QYRKIDETVLRKLPLPSNKEKKM 252

[Close]

BLAST of Cp4.1LG01g02500.1 vs. NCBI nr
Match: gi|225428904|ref|XP_002285375.1| (PREDICTED: reticulon-like protein B11 [Vitis vinifera])

HSP 1 Score: 295.0 bits (754), Expect = 9.9e-77
Identity = 143/204 (70.10%), Postives = 174/204 (85.29%), Query Frame = 1


Query: 5   SNSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLL 64
           S+   RISVHQ LGGG VAD LLW++WCG AV L S ++LW+LFERA YN LSFVANV+L
Sbjct: 4   SDHPSRISVHQALGGGSVADFLLWRRWCGAAVCLVSASSLWFLFERAGYNLLSFVANVVL 63

Query: 65  LLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNL 124
           LLV+ILF+WAKSAS+LNRPLPPLPD+EISEESV   AD +R+W+N+ALS+ARDIA+GRN+
Sbjct: 64  LLVVILFLWAKSASILNRPLPPLPDMEISEESVVKAADVIRVWINYALSVARDIAVGRNV 123

Query: 125 KLFLQVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQM 184
           KLFLQVA GLW+ S+IG  FNFLTLVY GV+LSLS P++YDKYQD ID+KL VTHR VQ 
Sbjct: 124 KLFLQVAFGLWVVSYIGSLFNFLTLVYIGVVLSLSVPVLYDKYQDHIDDKLRVTHRVVQT 183

Query: 185 QYRKLDENVLRKLPLPLNKEKKMQ 209
           QY+K+D+ +LRK+P+P+N  KK Q
Sbjct: 184 QYKKIDDKILRKIPMPINMGKKTQ 207

[Close]

BLAST of Cp4.1LG01g02500.1 vs. NCBI nr
Match: gi|645261606|ref|XP_008236373.1| (PREDICTED: reticulon-like protein B11 [Prunus mume])

HSP 1 Score: 290.8 bits (743), Expect = 1.9e-75
Identity = 148/200 (74.00%), Postives = 169/200 (84.50%), Query Frame = 1


Query: 9   RRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERADYNFLSFVANVLLLLVL 68
           RRISVHQ LGGGPVAD+LLWKKW GG ++LTST A W+LFERA YN LSFVANVLLLLV+
Sbjct: 8   RRISVHQALGGGPVADVLLWKKWSGGVLLLTSTAASWFLFERAGYNLLSFVANVLLLLVV 67

Query: 69  ILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFL 128
           ILF+WAKSASLLNRPLPPLPD+EISE SV   AD L  W+N  LSIARDIAIGRN KLFL
Sbjct: 68  ILFLWAKSASLLNRPLPPLPDMEISEASVVKAADALHAWINRVLSIARDIAIGRNWKLFL 127

Query: 129 QVALGLWISSFIGRFFNFLTLVYFGVLLSLSAPLVYDKYQDPIDEKLCVTHRYVQMQYRK 188
           QVA  LW+ S+IG FFNFLTLVY GV+LSLS P+VYDKYQ  IDEKL V +R +Q QYRK
Sbjct: 128 QVAFCLWLVSYIGSFFNFLTLVYIGVVLSLSVPVVYDKYQGHIDEKLLVANRVIQTQYRK 187

Query: 189 LDENVLRKLPLPLNKEKKMQ 209
           +D+++L+K+PL  NKEKK+Q
Sbjct: 188 IDDSILKKIPLRSNKEKKVQ 207

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g02500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTNLK_ARATH	1.6e-58	58.13	Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1	[more]
RTNLJ_ARATH	9.7e-56	55.56	Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1	[more]
RTNLE_ARATH	1.6e-34	40.10	Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1	[more]
RTNLA_ARATH	2.1e-34	41.18	Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1	[more]
RTNLP_ARATH	1.8e-33	38.07	Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g02500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L980_CUCSA	5.6e-95	88.35	Reticulon-like protein OS=Cucumis sativus GN=Csa_3G199610 PE=4 SV=1	[more]
A0A061E058_THECC	1.3e-83	78.33	Reticulon-like protein OS=Theobroma cacao GN=TCM_007136 PE=4 SV=1	[more]
D7UC00_VITVI	6.9e-77	70.10	Reticulon-like protein OS=Vitis vinifera GN=VIT_03s0180g00170 PE=4 SV=1	[more]
W9S660_9ROSA	3.8e-75	70.59	Reticulon-like protein OS=Morus notabilis GN=L484_027478 PE=4 SV=1	[more]
A0A067F9F1_CITSI	1.9e-74	71.08	Reticulon-like protein OS=Citrus sinensis GN=CISIN_1g0285691mg PE=4 SV=1	[more]

BLAST of Cp4.1LG01g02500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15280.1	5.5e-57	55.56	Reticulon family protein	[more]
AT3G19460.2	5.1e-47	49.77	Reticulon family protein	[more]
AT2G46170.1	9.0e-36	40.10	Reticulon family protein	[more]
AT4G23630.1	1.2e-35	41.18	VIRB2-interacting protein 1	[more]
AT5G41600.1	6.1e-32	38.24	VIRB2-interacting protein 3	[more]

BLAST of Cp4.1LG01g02500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112323\|ref\|XP_008456165.1\|	2.5e-96	88.83	PREDICTED: reticulon-like protein B11 isoform X1 [Cucumis melo]	[more]
gi\|778680027\|ref\|XP_004140714.2\|	8.1e-95	88.35	PREDICTED: reticulon-like protein B11 [Cucumis sativus]	[more]
gi\|590686937\|ref\|XP_007042524.1\|	1.9e-83	78.33	Reticulon family protein isoform 1 [Theobroma cacao]	[more]
gi\|225428904\|ref\|XP_002285375.1\|	9.9e-77	70.10	PREDICTED: reticulon-like protein B11 [Vitis vinifera]	[more]
gi\|645261606\|ref\|XP_008236373.1\|	1.9e-75	74.00	PREDICTED: reticulon-like protein B11 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003388	Reticulon

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g02500	Cp4.1LG01g02500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02500.1	Cp4.1LG01g02500.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02500.1:five_prime_utr:001	Cp4.1LG01g02500.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02500.1:cds:005	Cp4.1LG01g02500.1:cds:005	CDS
Cp4.1LG01g02500.1:cds:004	Cp4.1LG01g02500.1:cds:004	CDS
Cp4.1LG01g02500.1:cds:003	Cp4.1LG01g02500.1:cds:003	CDS
Cp4.1LG01g02500.1:cds:002	Cp4.1LG01g02500.1:cds:002	CDS
Cp4.1LG01g02500.1:cds:001	Cp4.1LG01g02500.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02500.1:three_prime_utr:004	Cp4.1LG01g02500.1:three_prime_utr:004	three_prime_UTR
Cp4.1LG01g02500.1:three_prime_utr:003	Cp4.1LG01g02500.1:three_prime_utr:003	three_prime_UTR
Cp4.1LG01g02500.1:three_prime_utr:002	Cp4.1LG01g02500.1:three_prime_utr:002	three_prime_UTR
Cp4.1LG01g02500.1:three_prime_utr:001	Cp4.1LG01g02500.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 22..175 score: 3.0
IPR003388	Reticulon	PROFILE	PS50845	RETICULON	coord: 22..208 score: 37
None	No IPR available	PANTHER	PTHR10994	RETICULON	coord: 8..208 score: 1.1E
None	No IPR available	PANTHER	PTHR10994:SF77	RETICULON-LIKE PROTEIN B10-RELATED	coord: 8..208 score: 1.1E