Cp4.1LG01g02410.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g02410.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	PRKR-interacting 1
Location	Cp4.1LG01 : 2447179 .. 2449889 (+)
Sequence length	1128

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGACCTTTTGTTCAACACAAAAACTGTCAGTTTAATCGAATTCGTAGGGCGCGGAACGGAGGCGGCGAAAATCCACAGCTCTTCGACGACCGACAAAGATAAAGAATCGGGAGTTCACTGGAAGGTCGAAGAAACATTGCTGTTAGGGTAACAGGAAGAGATTTTTGTTGATTGTTGGAGGAAATTTTCACAATTAGGGTTTTAGGGTTTCTGGAATATCATGTCAACCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGGTACTTGAGTGATTTATGTTGTTTTATATTGCGTAAATTTTATTAGTGACTTCTGTCTGCGGTTTATTCTCTCGTGGGCGTGTTTTCATGATGAATGGATGTAAAATTGTACCATTGCATTACTGGGATTGATTAGCAACGAGTGTGATTCCTATCTTAGGTCTTATGATATGAAACAATCTGGTTTCGGTACATTACAGGTTTTTAAATTCTTGCGACTGTTAGCTGGTAATGAGTGGAAGAACTGATTATTGGGGGAATTAGGCTGGGTGTGAACAACAATATTTCCCTTACCAAAGGTGTGAAAATCCAGACTATTATTGAATAAGGAAGATGCCCCTTTCTTTGATGGAAATTTGAGTAAACAAAATTCTTAGATTGGGTTTAGCTCGTGGATGATCTTTTTTTTTAATATATGGACGAAGGGGAGCCATAGGGTTGGTGGGATGATTACAAAAATGTTCATAAGCGAGTTGGAAAAGGTAGAATCCAAACCTGGCAAAAAGAGATAACGTACCTTGTAGGAGTACAACTTTTAGATTTATGAGATTGGATGTTTGTAGATAATTGTAAAATTAGAACACTTAACTAGCTTATTGTGGTGGATTTCGAATTGTGTATTTGGCTCACCGTCGGATACAGGATAGTCGGTGTTCTTTTTAACTGGACGAAGCTTTTTTCATTTACCATCTTAAAATGTTGTTATTATGCGAGTGAAATATCATATATTTGATTAAAATGTTGTTATTAATCGTATGCTCACGCGGGAGTAGCATAGCAACTTAGCATTAACTATATGCTAGTTGGTTGGTACTTTCTTTACGATCAGATAATGTCTATGCTGAAGCTAAGACTTACTGGCTTCACCTTATAGATTTTCACAGTGAAGAAAGTTTAAAATTATGGTGTGCTAGTCTGAGATTCAAAGCTGACTGCTGCCAAGCAGAATTTGATTTATTGGAGAGTTTTAAATGGATTGGAGCGATGATTTGTTCCACGCACTCGAATTTACGTATGACCTATCGAAGTTAGGTCGTTGTGGATACCATTAGGAAGTAATGATCGTGGAGTAGCAGTAGAGGGTTGACAAGTACTCTGTTTGCAAGCAATGCTCTGAAATCTTAGCTCGTGGAAATGCATCGCTTGCTTTTGTTGGTTTTTGGTGTCATCTAAGAAATGTTTTGATGTCATTTAATAGAAGTGAAAGGACGTGGTTTATAAATATACTGTTCGACGTGAAAGAAATTCTTTTTAGTCTGGTGTTAAATGGGTCTTTCATATTTTGAATCTTGATGTAGTTAAGAAAGGTAATGTATTACAATGGGGAATTGAAAGTTTTTACCTACTCAAACATCATCTGATGATTCTTATATGTGTTTAGGAAAGAAAGTCTCCACTTGTGTTGTTAAGCCTACAATTTTCACTTCAGATTGTATATGCATCAGACCTACCTTTTTGTTTGATCTATTTATTTTCCTCTCCATCCTTGATAATGAGCAACTGTTCGCGAGTTTGTGGAGTCTGTCTCGATCGTTGAATATATATACTAATACGTGCCTGCCCATCAAATTTTCAAATGACAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAGTTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGACGCATCCTCTGGCGATGAAGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACGAGCCATCTAACCAGAGACAGCTACCAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGTTGCATTTGAATGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTAGAACAGATTGACATAATATTAGTCGAGTCCGAGGGATACTCATGATTGTGTTATAATGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGTCAACCCTGACATGCTCGTAGAAACA

mRNA sequence

AAAATGGACCTTTTGTTCAACACAAAAACTGTCAGTTTAATCGAATTCGTAGGGCGCGGAACGGAGGCGGCGAAAATCCACAGCTCTTCGACGACCGACAAAGATAAAGAATCGGGAGTTCACTGGAAGGTCGAAGAAACATTGCTGTTAGGGTAACAGGAAGAGATTTTTGTTGATTGTTGGAGGAAATTTTCACAATTAGGGTTTTAGGGTTTCTGGAATATCATGTCAACCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAGTTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGACGCATCCTCTGGCGATGAAGGGGATACCGATAATGGCGAGGATGAAGCAACATGACTCGTTATTCTCCACCCGGAATCGAAGTTTGAACTCTTAGCCTCGAGCTTTCAGACGAGCCATCTAACCAGAGACAGCTACCAGTACCTGGAATCTGGCTTTTGTGTTTTTATTGCAGGTGGGATTGGAAGAATGTTGCATTTGAATGAATACACAATTCTCCCATCTTCCCACAGGACCTCTATCTTTCTCTCAATTGCATGGCGCTGAAATGTGTTAGCAGAATATCTATAACATTATTACATGTAGAACAGATTGACATAATATTAGTCGAGTCCGAGGGATACTCATGATTGTGTTATAATGATTCGTTGCTTATGATATATGAACAGAGGGGACGTTGATCTACGATCAGTCAACCCTGACATGCTCGTAGAAACA

Coding sequence (CDS)

ATGTCAACCGGCAAGCTGAAGGATGGGGACCGTCGGCTGGTGATTCCGATGCCCCCCAAACCGAAATCTGATACCCAGTTGGCGACAACCGAGACGAACGCGCTTGTGGCATATACGCCGCCGGTGAAGGAGGAGGATGAGGATTTGGAGGTCAAGCTCCGAAGAATCATCGATAATGTTCCTGTTCGTGTCAGCAACACGTCTGGAAGCTCTGCTGGTTCTGGTTCCGGTGATTTTCACCAGTATAGGCAAATGAGGCGAAAAGAACAAGACAGACTTGCTAGAATGGACGTTGATTATCAGAAAAAGAAAGAAATAGCCGAATTCAATATGCGAAGGGAAGAACGGTTGAAAGCTGCCGAGGAACGCACTTCAAAGAAGCGACTAAAGCGTCAAAAGAAAAAGCAAAGAAGAAAAGAAAAGAAGAGCAAGTTGAATTCAGGCGGAGGAGATGAGAATCAGAAAGACGCATCCTCTGGCGATGAAGGGGATACCGATAATGGCGAGGATGAAGCAACATGA

Protein sequence

MSTGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT

Homology

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BLAST of Cp4.1LG01g02410.1 vs. Swiss-Prot
Match: PKRI1_BOVIN (PRKR-interacting protein 1 OS=Bos taurus GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-07
Identity = 67/179 (37.43%), Postives = 89/179 (49.72%), Query Frame = 1


Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQALIIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E    A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLEAEFQKRLERNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR-KEKKSKL----NSGGGDENQKDASSGDE---GDTDNGED 171
           AEE+T+K+R KRQK K+++   KK KL     S    E Q+  SSG E   G  D  ED
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQSEASSETQEQPSSGSEEASGTEDEEED 178

[Close]

BLAST of Cp4.1LG01g02410.1 vs. Swiss-Prot
Match: PKRI1_PONAB (PRKR-interacting protein 1 OS=Pongo abelii GN=PRKRIP1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 63/177 (35.59%), Postives = 89/177 (50.28%), Query Frame = 1


Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR-KEKKSKL----NSGGGDENQKDASSGDEGDTDNGEDE 172
           AEE+T+K+R KRQK K+++   KK KL      G G   ++ +SS  E      E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEE 176

[Close]

BLAST of Cp4.1LG01g02410.1 vs. Swiss-Prot
Match: PKRI1_MOUSE (PRKR-interacting protein 1 OS=Mus musculus GN=Prkrip1 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 64/178 (35.96%), Postives = 89/178 (50.00%), Query Frame = 1


Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMNEWAPRA 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR-KEKKSKLNSGGGDE-----NQKDASSGDEGDTDNGEDE 172
           AEE+T+K+R KRQK K+++   KK KL      E      ++ ASS DE      E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQKEEPSQCQEQHASSSDEASETEEEEE 177

[Close]

BLAST of Cp4.1LG01g02410.1 vs. Swiss-Prot
Match: PKRI1_HUMAN (PRKR-interacting protein 1 OS=Homo sapiens GN=PRKRIP1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 63/177 (35.59%), Postives = 89/177 (50.28%), Query Frame = 1


Query: 18  PPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDN----VPVR---------- 77
           PP+PK + Q      NA            E+ ++KL R++ N    VP+           
Sbjct: 11  PPRPKKEPQTLVIPKNAA-----------EEQKLKLERLMKNPDKAVPIPEKMSEWAPRP 70

Query: 78  ----VSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKA 137
               V +  GSSAG+GSG+FH YR +RR+E  R   MD   +K+K  AEF  R E+   A
Sbjct: 71  PPEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIA 130

Query: 138 AEERTSKKRLKRQKKKQRR-KEKKSKL----NSGGGDENQKDASSGDEGDTDNGEDE 172
           AEE+T+K+R KRQK K+++   KK KL      G G   ++ +SS  E      E+E
Sbjct: 131 AEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEE 176

[Close]

BLAST of Cp4.1LG01g02410.1 vs. TrEMBL
Match: A0A0A0L705_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199600 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.0e-73
Identity = 161/173 (93.06%), Postives = 165/173 (95.38%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGKLKDG+RRLVIPMPPKPK DTQLAT E+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT 174
           EERTSKKRLKRQKKKQRRKEK+SKLNS G DENQKD SS DEGDTD GEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKRSKLNS-GEDENQKDESSDDEGDTDKGEDEAT 172

[Close]

BLAST of Cp4.1LG01g02410.1 vs. TrEMBL
Match: A0A067LM79_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15460 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.0e-50
Identity = 127/180 (70.56%), Postives = 150/180 (83.33%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTETNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ KD D ++V+        +PP+P +    A T + ALV Y+ PV KEE+EDLEVK
Sbjct: 1   MSTGRPKDSDLQVVVTPDKHVSGLPPRPPA----AGTASTALVEYSAPVFKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMD DYQK+KE+AEF+MR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDADYQKRKELAEFSMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEA 173
           REERLKAAEERT+KKRLKRQKKKQ++KEKK KLN+ GG+E+QK+ SS D+GD+D GE  A
Sbjct: 121 REERLKAAEERTAKKRLKRQKKKQKKKEKKVKLNA-GGEEHQKEESSDDDGDSDTGEPAA 175

[Close]

BLAST of Cp4.1LG01g02410.1 vs. TrEMBL
Match: B9RY95_RICCO (Expressed protein, putative OS=Ricinus communis GN=RCOM_0811390 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.8e-50
Identity = 124/178 (69.66%), Postives = 148/178 (83.15%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTETNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ +D D +L++        +PP+P        T + ALV YT P+ KEE+EDLEVK
Sbjct: 1   MSTGRPEDNDLQLMVQPEKPKPALPPRPLVAAMGTGTGSTALVEYTAPMLKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARM+VDYQK+KE+AEFNMR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMEVDYQKRKELAEFNMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGED 171
           REE+LKAAEERT+KKRLKRQ+KKQR+KEKK K+N+ GG+E QK  SS DEGD+D+GE+
Sbjct: 121 REEKLKAAEERTAKKRLKRQRKKQRKKEKKMKVNA-GGEEQQKHESSDDEGDSDDGEE 177

[Close]

BLAST of Cp4.1LG01g02410.1 vs. TrEMBL
Match: A0A0B0P818_GOSAR (PRKR-interacting 1 OS=Gossypium arboreum GN=F383_07187 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-49
Identity = 128/178 (71.91%), Postives = 145/178 (81.46%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-----MPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRR 60
           MSTG+ KDGD +L +      +PP+P S T  A  E        P  KEE+EDLEVKLRR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTTSTAIVEYEK-----PAFKEEEEDLEVKLRR 60

Query: 61  IIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREE 120
           II+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMRREE
Sbjct: 61  IIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMRREE 120

Query: 121 RLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT 174
           RLKAAEERT+KKRLKRQKKKQR+KEKK KL++ GG EN+K+ SS DE D+++  DEAT
Sbjct: 121 RLKAAEERTAKKRLKRQKKKQRKKEKKMKLSAEGG-ENKKEESSDDEADSEH--DEAT 170

[Close]

BLAST of Cp4.1LG01g02410.1 vs. TrEMBL
Match: A0A0D2RKD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G235000 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.7e-49
Identity = 127/178 (71.35%), Postives = 144/178 (80.90%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-----MPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRR 60
           MSTG+ KDGD +L +      +PP+P S T  A  E        P  KEE+EDLEVKLRR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTTSTAIVEYEK-----PAFKEEEEDLEVKLRR 60

Query: 61  IIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREE 120
           II+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMRREE
Sbjct: 61  IIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMRREE 120

Query: 121 RLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT 174
           RLKAAEERT+KKRLKRQKKKQR+KEKK K ++ GG EN+K+ SS DE D+++  DEAT
Sbjct: 121 RLKAAEERTAKKRLKRQKKKQRKKEKKMKSSAEGG-ENKKEESSDDEADSEH--DEAT 170

[Close]

BLAST of Cp4.1LG01g02410.1 vs. TAIR10
Match: AT2G15270.1 (AT2G15270.1 unknown protein)

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-39
Identity = 108/180 (60.00%), Postives = 133/180 (73.89%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTE--------TNALVAYTPPVK-EEDEDLEV 60
           MS+GK K GD RLV+       + T  A  E        ++++V Y PPV  E++EDLEV
Sbjct: 1   MSSGKPKQGDTRLVVA------ATTASALMEAKKADHGGSSSIVEYKPPVMLEDEEDLEV 60

Query: 61  KLRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNM 120
           KLRRI++NVPVRVSNTSGSSAGSGSGDFHQYRQMRR+EQDRL RMD+DY K+ ++AEF +
Sbjct: 61  KLRRILENVPVRVSNTSGSSAGSGSGDFHQYRQMRRREQDRLTRMDIDYNKRLKMAEFTI 120

Query: 121 RREERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDE 172
           RREE+ KAAEE+TSKKRLKRQKKKQ+++EKK K N+   +E  K    G E  +D GEDE
Sbjct: 121 RREEKQKAAEEKTSKKRLKRQKKKQKKQEKKQKPNT--TEEEVKQPRVG-EISSDEGEDE 171

[Close]

BLAST of Cp4.1LG01g02410.1 vs. NCBI nr
Match: gi|778680024|ref|XP_011651236.1| (PREDICTED: PRKR-interacting protein 1 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 4.2e-73
Identity = 161/173 (93.06%), Postives = 165/173 (95.38%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGKLKDG+RRLVIPMPPKPK DTQLAT E+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPDTQLATAESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT 174
           EERTSKKRLKRQKKKQRRKEK+SKLNS G DENQKD SS DEGDTD GEDEAT
Sbjct: 121 EERTSKKRLKRQKKKQRRKEKRSKLNS-GEDENQKDESSDDEGDTDKGEDEAT 172

[Close]

BLAST of Cp4.1LG01g02410.1 vs. NCBI nr
Match: gi|659112331|ref|XP_008456169.1| (PREDICTED: PRKR-interacting protein 1 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 3.6e-72
Identity = 158/173 (91.33%), Postives = 166/173 (95.95%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIPMPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRRIIDNV 60
           MSTGKLKDG+RRLVIPMPPKPK +TQLATTE+NALV YTPPVKEEDEDLEVKLRRIIDNV
Sbjct: 1   MSTGKLKDGERRLVIPMPPKPKPETQLATTESNALVEYTPPVKEEDEDLEVKLRRIIDNV 60

Query: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERLKAA 120
           PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREER+KAA
Sbjct: 61  PVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREERMKAA 120

Query: 121 EERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT 174
           EERT+KKRLKRQKKKQRRKEK+SK+NS G DENQK+ SS DEGDTD GEDEAT
Sbjct: 121 EERTAKKRLKRQKKKQRRKEKRSKMNS-GEDENQKEESSDDEGDTDKGEDEAT 172

[Close]

BLAST of Cp4.1LG01g02410.1 vs. NCBI nr
Match: gi|802540316|ref|XP_012075843.1| (PREDICTED: PRKR-interacting protein 1 [Jatropha curcas])

HSP 1 Score: 205.3 bits (521), Expect = 8.6e-50
Identity = 127/180 (70.56%), Postives = 150/180 (83.33%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTETNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ KD D ++V+        +PP+P +    A T + ALV Y+ PV KEE+EDLEVK
Sbjct: 1   MSTGRPKDSDLQVVVTPDKHVSGLPPRPPA----AGTASTALVEYSAPVFKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMD DYQK+KE+AEF+MR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDADYQKRKELAEFSMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEA 173
           REERLKAAEERT+KKRLKRQKKKQ++KEKK KLN+ GG+E+QK+ SS D+GD+D GE  A
Sbjct: 121 REERLKAAEERTAKKRLKRQKKKQKKKEKKVKLNA-GGEEHQKEESSDDDGDSDTGEPAA 175

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BLAST of Cp4.1LG01g02410.1 vs. NCBI nr
Match: gi|255555285|ref|XP_002518679.1| (PREDICTED: PRKR-interacting protein 1 [Ricinus communis])

HSP 1 Score: 204.9 bits (520), Expect = 1.1e-49
Identity = 124/178 (69.66%), Postives = 148/178 (83.15%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-------MPPKPKSDTQLATTETNALVAYTPPV-KEEDEDLEVK 60
           MSTG+ +D D +L++        +PP+P        T + ALV YT P+ KEE+EDLEVK
Sbjct: 1   MSTGRPEDNDLQLMVQPEKPKPALPPRPLVAAMGTGTGSTALVEYTAPMLKEEEEDLEVK 60

Query: 61  LRRIIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMR 120
           LRRII+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARM+VDYQK+KE+AEFNMR
Sbjct: 61  LRRIIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMEVDYQKRKELAEFNMR 120

Query: 121 REERLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGED 171
           REE+LKAAEERT+KKRLKRQ+KKQR+KEKK K+N+ GG+E QK  SS DEGD+D+GE+
Sbjct: 121 REEKLKAAEERTAKKRLKRQRKKQRKKEKKMKVNA-GGEEQQKHESSDDEGDSDDGEE 177

[Close]

BLAST of Cp4.1LG01g02410.1 vs. NCBI nr
Match: gi|728841762|gb|KHG21205.1| (PRKR-interacting 1 [Gossypium arboreum])

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49
Identity = 128/178 (71.91%), Postives = 145/178 (81.46%), Query Frame = 1


Query: 1   MSTGKLKDGDRRLVIP-----MPPKPKSDTQLATTETNALVAYTPPVKEEDEDLEVKLRR 60
           MSTG+ KDGD +L +      +PP+P S T  A  E        P  KEE+EDLEVKLRR
Sbjct: 1   MSTGRPKDGDTQLAVVEPKSGLPPRPPSTTSTAIVEYEK-----PAFKEEEEDLEVKLRR 60

Query: 61  IIDNVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKKKEIAEFNMRREE 120
           II+NVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQK+KEIAEFNMRREE
Sbjct: 61  IIENVPVRVSNTSGSSAGSGSGDFHQYRQMRRKEQDRLARMDVDYQKRKEIAEFNMRREE 120

Query: 121 RLKAAEERTSKKRLKRQKKKQRRKEKKSKLNSGGGDENQKDASSGDEGDTDNGEDEAT 174
           RLKAAEERT+KKRLKRQKKKQR+KEKK KL++ GG EN+K+ SS DE D+++  DEAT
Sbjct: 121 RLKAAEERTAKKRLKRQKKKQRKKEKKMKLSAEGG-ENKKEESSDDEADSEH--DEAT 170

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g02410.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PKRI1_BOVIN	2.4e-07	37.43	PRKR-interacting protein 1 OS=Bos taurus GN=PRKRIP1 PE=2 SV=1	[more]
PKRI1_PONAB	1.2e-06	35.59	PRKR-interacting protein 1 OS=Pongo abelii GN=PRKRIP1 PE=2 SV=1	[more]
PKRI1_MOUSE	1.2e-06	35.96	PRKR-interacting protein 1 OS=Mus musculus GN=Prkrip1 PE=1 SV=2	[more]
PKRI1_HUMAN	1.2e-06	35.59	PRKR-interacting protein 1 OS=Homo sapiens GN=PRKRIP1 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g02410.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L705_CUCSA	3.0e-73	93.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199600 PE=4 SV=1	[more]
A0A067LM79_JATCU	6.0e-50	70.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15460 PE=4 SV=1	[more]
B9RY95_RICCO	7.8e-50	69.66	Expressed protein, putative OS=Ricinus communis GN=RCOM_0811390 PE=4 SV=1	[more]
A0A0B0P818_GOSAR	1.7e-49	71.91	PRKR-interacting 1 OS=Gossypium arboreum GN=F383_07187 PE=4 SV=1	[more]
A0A0D2RKD2_GOSRA	8.7e-49	71.35	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G235000 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g02410.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15270.1	1.1e-39	60.00	unknown protein	[more]

BLAST of Cp4.1LG01g02410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680024\|ref\|XP_011651236.1\|	4.2e-73	93.06	PREDICTED: PRKR-interacting protein 1 [Cucumis sativus]	[more]
gi\|659112331\|ref\|XP_008456169.1\|	3.6e-72	91.33	PREDICTED: PRKR-interacting protein 1 [Cucumis melo]	[more]
gi\|802540316\|ref\|XP_012075843.1\|	8.6e-50	70.56	PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]	[more]
gi\|255555285\|ref\|XP_002518679.1\|	1.1e-49	69.66	PREDICTED: PRKR-interacting protein 1 [Ricinus communis]	[more]
gi\|728841762\|gb\|KHG21205.1\|	2.5e-49	71.91	PRKR-interacting 1 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009548	DUF1168

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g02410	Cp4.1LG01g02410	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02410.1:five_prime_utr:001	Cp4.1LG01g02410.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02410.1:cds:002	Cp4.1LG01g02410.1:cds:002	CDS
Cp4.1LG01g02410.1:cds:001	Cp4.1LG01g02410.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02410.1:three_prime_utr:001	Cp4.1LG01g02410.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02410.1	Cp4.1LG01g02410.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009548	Protein of unknown function DUF1168	PANTHER	PTHR13507	UNCHARACTERIZED	coord: 2..171 score: 4.2
IPR009548	Protein of unknown function DUF1168	PFAM	PF06658	DUF1168	coord: 54..170 score: 1.1
None	No IPR available	unknown	Coil	Coil	coord: 112..146 scor