Cp4.1LG01g02340.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g02340.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MYB-related transcription factor
Location	Cp4.1LG01 : 2444681 .. 2445379 (-)
Sequence length	699

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCTGAAGAGTGGGACATCGATCGGGTCAAGGGCCCATGGAGCCCGGAGGAAGACCAGTTGCTAAGGATTCTAGTGCAGCGCTACGGCGCTCGGAACTGGTCTGTTATCGGTCAGTCGATTCAAGGCCGGTCGGGGAAATCCTGCCGTCTGCGGTGGTTTAATCAGCTCTGTCCTGACGTGGAGCGCCAGGCGTTCACTGCGGAGGAGGACGAGGTCATCGTCGAAGCACACGCTAAGCACGGGAACAAGTGGGCGACAATCGCGAGACTACTCAACGGACGCACAGACAACGCGATTAAGAATCACTGGAATTCAACATTGAAGCGTAAGTTCTCTTCGATTGCTGAGATTAAAACTGAGTGTATGAGTCATGGATCGACGATTTCGATTGGAAATCAGTGTTTGAGTCCATCGAGATCGGATACGAACGATTCGATTCCGAGTCAGAACAAAAGGCCTTCGACTCGTCTAAGCCTATCTCTTCCAGGAACAGAATCATCACCTCCGCGACCGCAGCAGCAGAGTATTTCATCATTGCCGGAGGATCGTGAGGCGAAAGCGAAATCGGCGCGTTGTGGTAAGGAATTTCTGTCTGTAATGCAATTGATGATTAGAGAAGAGGTGAGGAATTACATAGCGGAGTATAGAAAACGGCAACGAATGAATGAGGAAGAAGATAGAAAGGCAGGGTAA

mRNA sequence

ATGACGTCTGAAGAGTGGGACATCGATCGGGTCAAGGGCCCATGGAGCCCGGAGGAAGACCAGTTGCTAAGGATTCTAGTGCAGCGCTACGGCGCTCGGAACTGGTCTGTTATCGGTCAGTCGATTCAAGGCCGGTCGGGGAAATCCTGCCGTCTGCGGTGGTTTAATCAGCTCTGTCCTGACGTGGAGCGCCAGGCGTTCACTGCGGAGGAGGACGAGGTCATCGTCGAAGCACACGCTAAGCACGGGAACAAGTGGGCGACAATCGCGAGACTACTCAACGGACGCACAGACAACGCGATTAAGAATCACTGGAATTCAACATTGAAGCGTAAGTTCTCTTCGATTGCTGAGATTAAAACTGAGTGTATGAGTCATGGATCGACGATTTCGATTGGAAATCAGTGTTTGAGTCCATCGAGATCGGATACGAACGATTCGATTCCGAGTCAGAACAAAAGGCCTTCGACTCGTCTAAGCCTATCTCTTCCAGGAACAGAATCATCACCTCCGCGACCGCAGCAGCAGAGTATTTCATCATTGCCGGAGGATCGTGAGGCGAAAGCGAAATCGGCGCGTTGTGGTAAGGAATTTCTGTCTGTAATGCAATTGATGATTAGAGAAGAGGTGAGGAATTACATAGCGGAGTATAGAAAACGGCAACGAATGAATGAGGAAGAAGATAGAAAGGCAGGGTAA

Coding sequence (CDS)

ATGACGTCTGAAGAGTGGGACATCGATCGGGTCAAGGGCCCATGGAGCCCGGAGGAAGACCAGTTGCTAAGGATTCTAGTGCAGCGCTACGGCGCTCGGAACTGGTCTGTTATCGGTCAGTCGATTCAAGGCCGGTCGGGGAAATCCTGCCGTCTGCGGTGGTTTAATCAGCTCTGTCCTGACGTGGAGCGCCAGGCGTTCACTGCGGAGGAGGACGAGGTCATCGTCGAAGCACACGCTAAGCACGGGAACAAGTGGGCGACAATCGCGAGACTACTCAACGGACGCACAGACAACGCGATTAAGAATCACTGGAATTCAACATTGAAGCGTAAGTTCTCTTCGATTGCTGAGATTAAAACTGAGTGTATGAGTCATGGATCGACGATTTCGATTGGAAATCAGTGTTTGAGTCCATCGAGATCGGATACGAACGATTCGATTCCGAGTCAGAACAAAAGGCCTTCGACTCGTCTAAGCCTATCTCTTCCAGGAACAGAATCATCACCTCCGCGACCGCAGCAGCAGAGTATTTCATCATTGCCGGAGGATCGTGAGGCGAAAGCGAAATCGGCGCGTTGTGGTAAGGAATTTCTGTCTGTAATGCAATTGATGATTAGAGAAGAGGTGAGGAATTACATAGCGGAGTATAGAAAACGGCAACGAATGAATGAGGAAGAAGATAGAAAGGCAGGGTAA

Protein sequence

MTSEEWDIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEIKTECMSHGSTISIGNQCLSPSRSDTNDSIPSQNKRPSTRLSLSLPGTESSPPRPQQQSISSLPEDREAKAKSARCGKEFLSVMQLMIREEVRNYIAEYRKRQRMNEEEDRKAG

Homology

[Close]

BLAST of Cp4.1LG01g02340.1 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.1e-43
Identity = 116/276 (42.03%), Postives = 145/276 (52.54%), Query Frame = 1


Query: 9   DRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFT 68
           DR+KGPWSPEED+ LR LV +YG RNW+VI +SI GRSGKSCRLRW NQL P VE + F+
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 69  AEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAE---------- 128
           AEEDE I  AHA+ GNKWATIARLLNGRTDNA+KNHWNSTLKRK                
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query: 129 -IKTECMSHGSTISIGNQCL--SPSRSDTNDS--IP------------------------ 188
            +K    +    +  G      SP+ SD +DS  IP                        
Sbjct: 123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAVVLPLPIE 182

Query: 189 --SQNKRPSTRLSLSLPGTE-----------------SSPPRPQQQSISSLPEDREAKAK 220
             S +  P T LSLSLPG +                 +S       ++S +P     +  
Sbjct: 183 TSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGA 242

[Close]

BLAST of Cp4.1LG01g02340.1 vs. Swiss-Prot
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.7e-32
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1


Query: 11  VKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFTAE 70
           +KGPW+ EEDQ +  LVQ+YG + WSVI + ++GR GK CR RW N L P+V++ ++T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113
           ED +I +AH + GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

[Close]

BLAST of Cp4.1LG01g02340.1 vs. Swiss-Prot
Match: MYB_CHICK (Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.7e-32
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1


Query: 11  VKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFTAE 70
           +KGPW+ EEDQ +  LVQ+YG + WSVI + ++GR GK CR RW N L P+V++ ++T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113
           ED +I +AH + GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

[Close]

BLAST of Cp4.1LG01g02340.1 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 139.8 bits (351), Expect = 3.7e-32
Identity = 60/102 (58.82%), Postives = 80/102 (78.43%), Query Frame = 1


Query: 11  VKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFTAE 70
           +KGPW+ EEDQ +  LVQ+YG + WSVI + ++GR GK CR RW N L P+V++ ++T E
Sbjct: 91  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 150

Query: 71  EDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113
           ED +I +AH + GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 151 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

[Close]

BLAST of Cp4.1LG01g02340.1 vs. Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-32
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 1


Query: 11  VKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFTAE 70
           VKGPW+ EEDQ +  LV +YG + WS+I + ++GR GK CR RW N L PDV++ ++T E
Sbjct: 85  VKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTEE 144

Query: 71  EDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113
           ED +I  AH + GN+WA IA+LL GRTDN+IKNHWNST+KRK
Sbjct: 145 EDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TrEMBL
Match: A0A0A0LA79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199590 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.4e-64
Identity = 144/225 (64.00%), Postives = 169/225 (75.11%), Query Frame = 1


Query: 1   MTSEEWDIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCP 60
           M S   DIDRVKGPWSPEED LLR+LVQ  GARNWS+I QSI GRSGKSCRLRWFNQLCP
Sbjct: 1   MPSVHPDIDRVKGPWSPEEDLLLRMLVQDQGARNWSLISQSIHGRSGKSCRLRWFNQLCP 60

Query: 61  DVERQAFTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEIK 120
            ++R+ FT EED  IV+AH  +GNKWATIARLLNGRTDNAIKNHWNSTLKRK+ S  E K
Sbjct: 61  GLDRRPFTPEEDAFIVDAHRIYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYGSNREKK 120

Query: 121 TE-C-MSHGSTISIGNQCLSPSRSDTNDSIPSQNKRPSTRLSLSLPGTESSPPRPQQQSI 180
           T+ C +S GSTIS+ NQCLS  RS+++D      + PST L+L LPG++  P     +SI
Sbjct: 121 TDHCGISQGSTISVWNQCLS-QRSESSD-WDEIIEPPSTTLTLCLPGSDELP----HKSI 180

Query: 181 SSLP-EDREAKAKSARC---GKEFLSVMQLMIREEVRNYIAEYRK 220
           SSLP ED   + K  +    G+EF+ VMQ MI+EEVRNY+AEY K
Sbjct: 181 SSLPVEDMVEERKGGKLDWFGEEFMCVMQKMIKEEVRNYMAEYEK 219

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TrEMBL
Match: D9ZJ57_MALDO (MYB domain class transcription factor OS=Malus domestica GN=MYB3 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.4e-54
Identity = 132/261 (50.57%), Postives = 163/261 (62.45%), Query Frame = 1


Query: 7   DIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQA 66
           ++DRVKGPWSP+ED+ LR +VQRYGARNWSVI +S+ GRSGKSCRLRW NQL P+VE +A
Sbjct: 5   ELDRVKGPWSPDEDEKLRQIVQRYGARNWSVISKSVPGRSGKSCRLRWCNQLSPEVEHRA 64

Query: 67  FTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAE-------- 126
           FT EEDE+I  AHAK+GNKWATIARLLNGRTDNAIKNHWNSTLKRKFS+++         
Sbjct: 65  FTPEEDEIIAGAHAKYGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSALSPNEDGATID 124

Query: 127 ---IKTECMSHGSTISIGNQCLSP--------SRSD--------------------TNDS 186
              ++ E  +  + +S    C SP        S SD                    T +S
Sbjct: 125 EGILRPEKKTATAAVSFSGLCYSPGSPSGSDVSESDVPASSSSQVFRPVARTAAIVTRES 184

Query: 187 IPSQNK--RPSTRLSLSLPGTES---------SPPRPQQQSISSLPEDREAKAKSARC-- 215
            PSQ +   PST L+LSLPG ES         S P   Q++ S  PE +E    ++    
Sbjct: 185 PPSQTEWCEPSTLLTLSLPGAESALHELPTNESAPHRGQRTASLQPE-KETNVNNSNTMS 244

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TrEMBL
Match: A0A0J8BJG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223840 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-52
Identity = 124/226 (54.87%), Postives = 151/226 (66.81%), Query Frame = 1


Query: 9   DRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFT 68
           DR+KGPWSPEED+LL+ LVQ++GARNWSVI +SI GRSGKSCRLRW NQL P+VE + F+
Sbjct: 4   DRIKGPWSPEEDELLQKLVQKHGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 63

Query: 69  AEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEIKTECMSHGS 128
            EEDE+IV AHA+HGNKWATI+RLLNGRTDNAIKNHWNSTLKRKFSSI            
Sbjct: 64  TEEDEIIVRAHAQHGNKWATISRLLNGRTDNAIKNHWNSTLKRKFSSIVAGDEIYRPEKR 123

Query: 129 TISIGNQCLSPSRSDTNDS----IPS-------QNKRPSTRLSLSLPGTESSPPRPQQQS 188
                +  LSPS SD +DS    +P+       Q   P T L+LSLPG     P    +S
Sbjct: 124 PEISFSPPLSPSESDVSDSGVGYLPTVVEERENQENDPLTALTLSLPGIIEEHP---SKS 183

Query: 189 ISSLPEDR-------EAKAKSARCGKEFLSVMQLMIREEVRNYIAE 217
            S+  E R       E+  ++   G E ++VMQ MI++EVRNY+ E
Sbjct: 184 ESTQEETRKVDVVGCESVKETMSFGPELMAVMQEMIKKEVRNYMME 226

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TrEMBL
Match: V4S6Y3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029124mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.0e-52
Identity = 124/229 (54.15%), Postives = 150/229 (65.50%), Query Frame = 1


Query: 9   DRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFT 68
           +RVKGPWSPEEDQLL  LVQRYGARNWSVI +SI GRSGKSCRLRW NQL P+VE + FT
Sbjct: 8   ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFT 67

Query: 69  AEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSI------------ 128
            +EDE+I++AHA++GNKWATIARLLNGRTDNAIKNHWNSTLKRK++              
Sbjct: 68  PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDED 127

Query: 129 AEIKTECMSHGSTISIGNQCLSPSRSDTNDS------IPSQNK-----RPSTRLSLSLPG 188
           +E   E     S +S+     SPS SD +DS        S+++       ST L+L LP 
Sbjct: 128 SEDSDEREKKRSAVSVSGISCSPSGSDVSDSGLPVRVFESESRYNEVFDVSTDLTLGLPV 187

Query: 189 TESSPPRPQQQSISSLPEDREAKAKSARCGKEFLSVMQLMIREEVRNYI 215
           TE        Q  ++  +D+ +   S   G EFLSVMQ MIR EVRNY+
Sbjct: 188 TELKKCDSVSQQENNSDDDKTSNTPS--FGPEFLSVMQEMIRNEVRNYM 234

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TrEMBL
Match: A0A0K9R8X8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093790 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 5.0e-52
Identity = 125/230 (54.35%), Postives = 153/230 (66.52%), Query Frame = 1


Query: 9   DRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFT 68
           DR+KGPWSPEED LL  LVQ++GARNWSVI +SI GRSGKSCRLRW NQL P+VE + FT
Sbjct: 5   DRIKGPWSPEEDDLLTKLVQKHGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFT 64

Query: 69  AEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEI-KTECMSHG 128
           AEED++IV AH K GNKWATI+RLLNGRTDNAIKNHWNSTLKRKFS++  + +       
Sbjct: 65  AEEDDIIVRAHHKFGNKWATISRLLNGRTDNAIKNHWNSTLKRKFSAVGGVDEVYRPEKR 124

Query: 129 STISIGNQCLSPSRSDTNDSIPSQNKRPS-------------TRLSLSLPGTESSPP--- 188
             IS  +   SPS SD +DS  +   RP+             T L+LSLPG E   P   
Sbjct: 125 PEISHFSPPASPSESDVSDSGVAAGFRPAVVEERENLEDDPLTALTLSLPGVEEQHPSRI 184

Query: 189 RPQQQSISSLPEDR--EAKAKSARCGKEFLSVMQLMIREEVRNYIAEYRK 220
            P Q+      E+R  E+  ++   G E ++VMQ MIR+EVR+Y+AE  K
Sbjct: 185 EPTQE------ENRKGESVKETLSFGPELMTVMQEMIRKEVRSYMAEAEK 228

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TAIR10
Match: AT4G37260.1 (AT4G37260.1 myb domain protein 73)

HSP 1 Score: 189.1 bits (479), Expect = 3.0e-48
Identity = 121/271 (44.65%), Postives = 158/271 (58.30%), Query Frame = 1


Query: 7   DIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQA 66
           +++R+KGPWSPEED LL+ LVQ++G RNWS+I +SI GRSGKSCRLRW NQL P+VE +A
Sbjct: 8   NMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRA 67

Query: 67  FTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFS------------ 126
           F+ EEDE I+ AHA+ GNKWATI+RLLNGRTDNAIKNHWNSTLKRK S            
Sbjct: 68  FSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQSCDFGGNG 127

Query: 127 ----SIAEIKT--ECMSHGSTISIGNQCL--SPSRSDTND-----------------SIP 186
               ++ E +      S G  +S G      SPS SD ++                 +  
Sbjct: 128 GYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQSSGGAHVFKPTVRSEVTAS 187

Query: 187 SQNKRPSTRLSLSLPGTESS-----PPRPQQQSISS-------LP---------EDREAK 220
           S  + P T LSLSLP T+ +     P +  Q ++          P         E+ EAK
Sbjct: 188 SSGEDPPTYLSLSLPWTDETVRVNEPVQLNQNTVMDGGYTAELFPVRKEEQVEVEEEEAK 247

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TAIR10
Match: AT2G23290.1 (AT2G23290.1 myb domain protein 70)

HSP 1 Score: 181.4 bits (459), Expect = 6.3e-46
Identity = 82/108 (75.93%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 7   DIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQA 66
           ++DR+KGPWSPEED LL+ LVQ++G RNWS+I +SI GRSGKSCRLRW NQL P+VE + 
Sbjct: 8   EMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRG 67

Query: 67  FTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFS 115
           FTAEED+ I+ AHA+ GNKWATIARLLNGRTDNAIKNHWNSTLKRK S
Sbjct: 68  FTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS 115

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TAIR10
Match: AT5G67300.1 (AT5G67300.1 myb domain protein r1)

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-44
Identity = 116/276 (42.03%), Postives = 145/276 (52.54%), Query Frame = 1


Query: 9   DRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFT 68
           DR+KGPWSPEED+ LR LV +YG RNW+VI +SI GRSGKSCRLRW NQL P VE + F+
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 69  AEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAE---------- 128
           AEEDE I  AHA+ GNKWATIARLLNGRTDNA+KNHWNSTLKRK                
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query: 129 -IKTECMSHGSTISIGNQCL--SPSRSDTNDS--IP------------------------ 188
            +K    +    +  G      SP+ SD +DS  IP                        
Sbjct: 123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPRPGAVVLPLPIE 182

Query: 189 --SQNKRPSTRLSLSLPGTE-----------------SSPPRPQQQSISSLPEDREAKAK 220
             S +  P T LSLSLPG +                 +S       ++S +P     +  
Sbjct: 183 TSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVSFMPFSGGFRGA 242

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TAIR10
Match: AT3G50060.1 (AT3G50060.1 myb domain protein 77)

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-43
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 1


Query: 9   DRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFT 68
           DRVKGPWS EED+ LR +V++YG RNWS I +SI GRSGKSCRLRW NQL P+VE + F+
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 69  AEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEIKT 122
            EEDE IV A A+ GNKWATIARLLNGRTDNA+KNHWNSTLKRK S    + T
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSGGVAVTT 115

[Close]

BLAST of Cp4.1LG01g02340.1 vs. TAIR10
Match: AT3G55730.1 (AT3G55730.1 myb domain protein 109)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-39
Identity = 84/168 (50.00%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 10  RVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQAFTA 69
           +VKGPWS EED +L  LV++ G RNWS+I + I GRSGKSCRLRW NQL P ++R+ F+ 
Sbjct: 54  KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query: 70  EEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEIKTECMSHGST 129
           EED +I+ AHA HGNKWA IA+LL GRTDNAIKNHWNSTL+RK++ +     + M++  T
Sbjct: 114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWN-NGQWMANSVT 173

Query: 130 ISIGNQCLSPSRSDTNDSIPSQNKRPSTRLSLSLPGTESSPPRPQQQS 178
                     + S  N+++      PS++  L      SSPP+P Q S
Sbjct: 174 ----------TASVKNENVDETTNPPSSKQQLPQGDINSSPPKPPQVS 210

[Close]

BLAST of Cp4.1LG01g02340.1 vs. NCBI nr
Match: gi|449446099|ref|XP_004140809.1| (PREDICTED: transcription factor MYB44-like [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 6.3e-64
Identity = 144/225 (64.00%), Postives = 169/225 (75.11%), Query Frame = 1


Query: 1   MTSEEWDIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCP 60
           M S   DIDRVKGPWSPEED LLR+LVQ  GARNWS+I QSI GRSGKSCRLRWFNQLCP
Sbjct: 1   MPSVHPDIDRVKGPWSPEEDLLLRMLVQDQGARNWSLISQSIHGRSGKSCRLRWFNQLCP 60

Query: 61  DVERQAFTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEIK 120
            ++R+ FT EED  IV+AH  +GNKWATIARLLNGRTDNAIKNHWNSTLKRK+ S  E K
Sbjct: 61  GLDRRPFTPEEDAFIVDAHRIYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYGSNREKK 120

Query: 121 TE-C-MSHGSTISIGNQCLSPSRSDTNDSIPSQNKRPSTRLSLSLPGTESSPPRPQQQSI 180
           T+ C +S GSTIS+ NQCLS  RS+++D      + PST L+L LPG++  P     +SI
Sbjct: 121 TDHCGISQGSTISVWNQCLS-QRSESSD-WDEIIEPPSTTLTLCLPGSDELP----HKSI 180

Query: 181 SSLP-EDREAKAKSARC---GKEFLSVMQLMIREEVRNYIAEYRK 220
           SSLP ED   + K  +    G+EF+ VMQ MI+EEVRNY+AEY K
Sbjct: 181 SSLPVEDMVEERKGGKLDWFGEEFMCVMQKMIKEEVRNYMAEYEK 219

[Close]

BLAST of Cp4.1LG01g02340.1 vs. NCBI nr
Match: gi|302398931|gb|ADL36760.1| (MYB domain class transcription factor [Malus domestica])

HSP 1 Score: 219.2 bits (557), Expect = 7.7e-54
Identity = 132/261 (50.57%), Postives = 163/261 (62.45%), Query Frame = 1


Query: 7   DIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQA 66
           ++DRVKGPWSP+ED+ LR +VQRYGARNWSVI +S+ GRSGKSCRLRW NQL P+VE +A
Sbjct: 5   ELDRVKGPWSPDEDEKLRQIVQRYGARNWSVISKSVPGRSGKSCRLRWCNQLSPEVEHRA 64

Query: 67  FTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAE-------- 126
           FT EEDE+I  AHAK+GNKWATIARLLNGRTDNAIKNHWNSTLKRKFS+++         
Sbjct: 65  FTPEEDEIIAGAHAKYGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSALSPNEDGATID 124

Query: 127 ---IKTECMSHGSTISIGNQCLSP--------SRSD--------------------TNDS 186
              ++ E  +  + +S    C SP        S SD                    T +S
Sbjct: 125 EGILRPEKKTATAAVSFSGLCYSPGSPSGSDVSESDVPASSSSQVFRPVARTAAIVTRES 184

Query: 187 IPSQNK--RPSTRLSLSLPGTES---------SPPRPQQQSISSLPEDREAKAKSARC-- 215
            PSQ +   PST L+LSLPG ES         S P   Q++ S  PE +E    ++    
Sbjct: 185 PPSQTEWCEPSTLLTLSLPGAESALHELPTNESAPHRGQRTASLQPE-KETNVNNSNTMS 244

[Close]

BLAST of Cp4.1LG01g02340.1 vs. NCBI nr
Match: gi|657962964|ref|XP_008373085.1| (PREDICTED: transcription factor MYB44-like [Malus domestica])

HSP 1 Score: 219.2 bits (557), Expect = 7.7e-54
Identity = 132/261 (50.57%), Postives = 163/261 (62.45%), Query Frame = 1


Query: 7   DIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVERQA 66
           ++DRVKGPWSP+ED+ LR +VQRYGARNWSVI +S+ GRSGKSCRLRW NQL P+VE +A
Sbjct: 18  ELDRVKGPWSPDEDEKLRQIVQRYGARNWSVISKSVPGRSGKSCRLRWCNQLSPEVEHRA 77

Query: 67  FTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAE-------- 126
           FT EEDE+I  AHAK+GNKWATIARLLNGRTDNAIKNHWNSTLKRKFS+++         
Sbjct: 78  FTPEEDEIIAGAHAKYGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSALSPNEDGATID 137

Query: 127 ---IKTECMSHGSTISIGNQCLSP--------SRSD--------------------TNDS 186
              ++ E  +  + +S    C SP        S SD                    T +S
Sbjct: 138 EGILRPEKKAATAAVSFSGLCYSPGSPSGSDVSESDVPASSSSQVFRPVARTAAIVTRES 197

Query: 187 IPSQNK--RPSTRLSLSLPGTES---------SPPRPQQQSISSLPEDREAKAKSARC-- 215
            PSQ +   PST L+LSLPG ES         S P   Q++ S  PE +E    ++    
Sbjct: 198 PPSQTEWCEPSTLLTLSLPGAESALHELPTNESAPHRGQRTASLQPE-KETNVNNSNTMS 257

[Close]

BLAST of Cp4.1LG01g02340.1 vs. NCBI nr
Match: gi|470140452|ref|XP_004305954.1| (PREDICTED: transcription factor MYB44-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 129/256 (50.39%), Postives = 164/256 (64.06%), Query Frame = 1


Query: 4   EEWDIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPDVE 63
           ++ ++DRVKGPWSPEED LLR LVQR+GARNW++I +SI GRSGKSCRLRW NQL P+VE
Sbjct: 7   QQRELDRVKGPWSPEEDDLLRKLVQRHGARNWTLISKSIPGRSGKSCRLRWCNQLSPEVE 66

Query: 64  RQAFTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAE----- 123
            +AFTAEEDE+I  AH+K+GNKWATIARLLNGRTDNAIKNHWNSTLKRK+SS+AE     
Sbjct: 67  HRAFTAEEDEIIAAAHSKYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYSSMAEDGGGG 126

Query: 124 ---------IKTECMSHGSTIS-IGNQCLSPSRSDTNDS--------------------- 183
                    ++ E  S  +++S  G    SPS SD +DS                     
Sbjct: 127 GVEENQYHILRPEKKSATASVSGRGYSPTSPSGSDVSDSGVAPAVTSAQVFWPMARAVMR 186

Query: 184 ----IPSQNKRPSTRLSLSLPGTESSPPRPQQQSIS-----SLPEDREAKAKSARCGKEF 215
                P     PST L+LSLPG      R ++++ S     SL E++    ++   G EF
Sbjct: 187 TESPPPRNEPEPSTLLTLSLPGGSEVATRREEKTTSLCLTTSLDENQN---RTMSFGPEF 246

[Close]

BLAST of Cp4.1LG01g02340.1 vs. NCBI nr
Match: gi|731360186|ref|XP_010691674.1| (PREDICTED: transcription factor MYB44-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 214.5 bits (545), Expect = 1.9e-52
Identity = 126/233 (54.08%), Postives = 153/233 (65.67%), Query Frame = 1


Query: 2   TSEEWDIDRVKGPWSPEEDQLLRILVQRYGARNWSVIGQSIQGRSGKSCRLRWFNQLCPD 61
           TS     DR+KGPWSPEED+LL+ LVQ++GARNWSVI +SI GRSGKSCRLRW NQL P+
Sbjct: 8   TSPLMAADRIKGPWSPEEDELLQKLVQKHGARNWSVISKSIPGRSGKSCRLRWCNQLSPE 67

Query: 62  VERQAFTAEEDEVIVEAHAKHGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSSIAEIKT 121
           VE + F+ EEDE+IV AHA+HGNKWATI+RLLNGRTDNAIKNHWNSTLKRKFSSI     
Sbjct: 68  VEHRPFSTEEDEIIVRAHAQHGNKWATISRLLNGRTDNAIKNHWNSTLKRKFSSIVAGDE 127

Query: 122 ECMSHGSTISIGNQCLSPSRSDTNDS----IPS-------QNKRPSTRLSLSLPGTESSP 181
                       +  LSPS SD +DS    +P+       Q   P T L+LSLPG     
Sbjct: 128 IYRPEKRPEISFSPPLSPSESDVSDSGVGYLPTVVEERENQENDPLTALTLSLPGIIEEH 187

Query: 182 PRPQQQSISSLPEDR-------EAKAKSARCGKEFLSVMQLMIREEVRNYIAE 217
           P    +S S+  E R       E+  ++   G E ++VMQ MI++EVRNY+ E
Sbjct: 188 P---SKSESTQEETRKVDVVGCESVKETMSFGPELMAVMQEMIKKEVRNYMME 237

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g02340.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	2.1e-43	42.03	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MYB_BOVIN	3.7e-32	58.82	Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1	[more]
MYB_CHICK	3.7e-32	58.82	Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1	[more]
MYB_HUMAN	3.7e-32	58.82	Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2	[more]
MYBA_XENLA	4.9e-32	58.82	Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g02340.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA79_CUCSA	4.4e-64	64.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199590 PE=4 SV=1	[more]
D9ZJ57_MALDO	5.4e-54	50.57	MYB domain class transcription factor OS=Malus domestica GN=MYB3 PE=2 SV=1	[more]
A0A0J8BJG1_BETVU	1.7e-52	54.87	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223840 PE=4 S...	[more]
V4S6Y3_9ROSI	3.0e-52	54.15	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029124mg PE=4 SV=1	[more]
A0A0K9R8X8_SPIOL	5.0e-52	54.35	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093790 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g02340.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37260.1	3.0e-48	44.65	myb domain protein 73	[more]
AT2G23290.1	6.3e-46	75.93	myb domain protein 70	[more]
AT5G67300.1	1.2e-44	42.03	myb domain protein r1	[more]
AT3G50060.1	3.8e-43	70.80	myb domain protein 77	[more]
AT3G55730.1	1.2e-39	50.00	myb domain protein 109	[more]

BLAST of Cp4.1LG01g02340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446099\|ref\|XP_004140809.1\|	6.3e-64	64.00	PREDICTED: transcription factor MYB44-like [Cucumis sativus]	[more]
gi\|302398931\|gb\|ADL36760.1\|	7.7e-54	50.57	MYB domain class transcription factor [Malus domestica]	[more]
gi\|657962964\|ref\|XP_008373085.1\|	7.7e-54	50.57	PREDICTED: transcription factor MYB44-like [Malus domestica]	[more]
gi\|470140452\|ref\|XP_004305954.1\|	1.3e-53	50.39	PREDICTED: transcription factor MYB44-like [Fragaria vesca subsp. vesca]	[more]
gi\|731360186\|ref\|XP_010691674.1\|	1.9e-52	54.08	PREDICTED: transcription factor MYB44-like [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017930	Myb_dom
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g02340	Cp4.1LG01g02340	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02340.1:cds:001	Cp4.1LG01g02340.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g02340.1	Cp4.1LG01g02340.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 12..57 score: 3.3E-17coord: 64..108 score: 1.1
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..60 score: 2.2E-11coord: 63..111 score: 4.5
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 13..65 score: 2.8E-24coord: 66..112 score: 3.7
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 9..105 score: 5.88
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 7..58 score: 19.947coord: 59..113 score: 24
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 7..230 score: 2.1
None	No IPR available	PANTHER	PTHR10641:SF639	SUBFAMILY NOT NAMED	coord: 7..230 score: 2.1