Cp4.1LG01g00370.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAAAAAGAAAAAGGCTAACCCTATAAAAGGGCACACCCTGGAAAGTCTGGATCCCCTCGTTTGCCCGTCGCGAGACTGCCTCTGTTTCCGTTTAGAGATTTCGTCTTCTTCTTCATTTCGCCATTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTGCGAGACTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGAATCGCAGAGAGAGATCTAACCTCCTGTACTACATTTCTTGCGATTCTTCGCCTGCAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGTTAGTTCTCTTTCTTTTATGTTTTATTTTGCATTTATGTTCCAGATCTGTATGCAATTCTTTGATCTCTGACCTTTGTTTATTCTTTGATTTCGGTAGAATATTTTGGCGTTATTTTTTAGGTTCGGTTTTTGAGTTAATTGGAATTTTGAAAATTTTGTTTCAATTTACGTTTATGTACTGCGACTTGACAAACTTCTCAAATCGTAACTTATTTCACTTTTTTGTCCCTTCAATTTTTTGTGTGTTCAATAAAGCTTTTGGTGGATCCATTTTTGGTACAAGTACCATCAATTTTAGTTATCTGCGGGCCAATTTGAGAAATAAAAAAAAAATAAAAAAAATAAAACATCAATCATACAATATACTTCAATAAAGATATGAAGATATGAAGAAAGAGTTGTCAAAACTATCAAAGATGTTTCAATTCATGTCACAGAAGAAGAATAAAGTTTGATGGTTATAAATTTAGAGTGAGTTACCCTTCAGAGTAATTTAGAGTTATTTTATTTTGACGTGACCATAAAACTGAAAATATAAAACTGGAAATAGCGAAATAGCTTCGCAGTAATTTCAATAATTAATAAATATCCCATTTTGGAGTGAAATTAAACCGATTGTCATTATCAGACTAAATATATGGTTTTACTTCTTTTTTCTGCACTTTCTAAATTTATCAAGAAATTTAGCTGCATTGCTCCTTGATTAATTAAATCACACAAGCCTTACAGTACAATGTTTTCTACTCAATTACTAGGAGCGGTTTGGGCATTGGCTTGGATTTTGGTGGGATTGGGTTCTAAATCTATATCCATGTTTGGTCGAAATAACAAACTCTCTCAAAATCTATGGATACCCCTCGAAATCTATGGTCTCCGTTGAAATTACAATAATTGAGGGTCCACCACTTTTGTTTTCCATTTTCTCACAATTATGGTGGTTCCTACCATTTTTGCTTGGGTCTCGTGATTTGTTTAATTAAAATGCAGGGTTATATTATCTTAGTTCATAATATGGTTAATGTTGAAAAATGAAAAGACCAGAAGGAAATCAACTAATTGGAATGCGTGCAATGGGAATTGACAGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAGCTTCTAGGAGCATAATAGTATTTGGGAGTTTAGTTAGAAATGGCAATGGGTTCTTCTCTTGCTGGATCCTTTCCTGTTTCTGTTTTGGTTTTTATTTATTCATGAGATCATCATCATCATCCTCACACATTTCTTCTATGTACATTCTCCTCATTTTTAAATCACATTTATTGGCTTTCCCTTTTTCCCCTTTCCTCTCTTCAATTTTGTACCCAAATAACATCAAAAATATTCTCTTCGTAATGTTATTAATATATTTAAAATTAAAATTAAGTTTGA GGAAAAAGAAAAAGGCTAACCCTATAAAAGGGCACACCCTGGAAAGTCTGGATCCCCTCGTTTGCCCGTCGCGAGACTGCCTCTGTTTCCGTTTAGAGATTTCGTCTTCTTCTTCATTTCGCCATTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTGCGAGACTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGAATCGCAGAGAGAGATCTAACCTCCTGTACTACATTTCTTGCGATTCTTCGCCTGCAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAGCTTCTAGGAGCATAATAGTATTTGGGAGTTTAGTTAGAAATGGCAATGGGTTCTTCTCTTGCTGGATCCTTTCCTGTTTCTGTTTTGGTTTTTATTTATTCATGAGATCATCATCATCATCCTCACACATTTCTTCTATGTACATTCTCCTCATTTTTAAATCACATTTATTGGCTTTCCCTTTTTCCCCTTTCCTCTCTTCAATTTTGTACCCAAATAACATCAAAAATATTCTCTTCGTAATGTTATTAATATATTTAAAATTAAAATTAAGTTTGA ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAGCTTCTAG MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSSF
BLAST of Cp4.1LG01g00370.1 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 8.7e-15 Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 1.6e-13 Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 9.0e-12 Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TrEMBL
Match: A0A0A0KZS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051380 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 1.3e-20 Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TrEMBL
Match: A0A067JZA6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20491 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 9.4e-16 Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TrEMBL
Match: A0A087GCU3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G416500 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 6.7e-14 Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TrEMBL
Match: A0A067G9U3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034994mg PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13 Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TrEMBL
Match: V4TLZ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023159mg PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13 Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20) HSP 1 Score: 80.5 bits (197), Expect = 4.9e-16 Identity = 46/72 (63.89%), Postives = 52/72 (72.22%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41) HSP 1 Score: 77.8 bits (190), Expect = 3.2e-15 Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16) HSP 1 Score: 76.3 bits (186), Expect = 9.2e-15 Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22) HSP 1 Score: 70.5 bits (171), Expect = 5.1e-13 Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. NCBI nr
Match: gi|449464078|ref|XP_004149756.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus]) HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20 Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. NCBI nr
Match: gi|659102138|ref|XP_008451971.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]) HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19 Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. NCBI nr
Match: gi|720033434|ref|XP_010266430.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera]) HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16 Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. NCBI nr
Match: gi|720017497|ref|XP_010261486.1| (PREDICTED: arabinogalactan peptide 20-like [Nelumbo nucifera]) HSP 1 Score: 92.0 bits (227), Expect = 4.6e-16 Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 1
BLAST of Cp4.1LG01g00370.1 vs. NCBI nr
Match: gi|802735165|ref|XP_012086771.1| (PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]) HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15 Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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