Cp4.1LG00g09390.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCGGAAGTTTATCCACCGCCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCCCATCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGACCAGTGCTTTAGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAATATTCCACCTCCACTCTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATGTATGTATGTATGTATATGCATATAAAAAATGTAAGAGTCTAGTTCTTTTCGATCTTACAATCCACCTTCTTTGTGATCTAGTGTTCTCGCTAACATTCGTTCACTTTTTTAATTGACGTGGGACCCTCCCAATCTATCCCCTTCCATGCTCAACATTCTTTCTGGCACACTGTCTCGTGTCTACCCCCTTCCAATCGATGTGGGACTCCTCCCAATCCACCCCCTTTCAATCTCCCGTGTTTTGCTGGCACATTGCCTTATGTCCAACCCCTTTGGAGTTTAGGGTCCTCGTTGGTACATCACCAAGAGTGTTTTGTTCTCCTACCCAACCGATGTCGGATCTCACAATCCATTCTCTTTCGGGGCCTAGCATCCTCGTTGTCACTCGTTTCCTTCTCTAATCGATGTGGGACCCTCCTAATCCACTCTCTTCAAGGCCCAGCATCCTTGCTAGCACTCATTCCCTTCTCTAATCGATGTGGGACCATCTCAATCCACCCTCCTCAGGGCCCAGCATCCTCGCTGGCACTCGTTCCCTTCTCTAATCAATGTGAGACTCTCTCAATCCACTCCCTACGGGACCTGGTGTCTTTGCTGGCACACCGCCTCGTGTCGACCCCCCTTTAGGATTCAGCCTCCTCGCTAGCACATAGCTCGGTATCTGTCTCTGATACCAACTGCAACAGTTCAAACCCATCGCTAGCAGATACTGTCCTCTTTGAACTTTTTATTTCAAGTTTTCCCTCAAAGTTTTTAAAACGTGTCTACTAACAGAGGTTTCCACACCCTTATAAACAATGTTTTATTCTCCTTCCTAACAGATGCAGGATCTCAAAAAAAAAAAAAAAAAAACGTCTTAGTGTTATGATGTTATATTCTTAAACAGGTCCAGCAGAAATCGGTGCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCCAGGCACTGA CCGGAAGTTTATCCACCGCCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCCCATCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGACCAGTGCTTTAGCTTCTCCTAAAACCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCCAGGCACTGA CCGGAAGTTTATCCACCGCCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCCCATCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGACCAGTGCTTTAGCTTCTCCTAAAACCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCCAGGCACTGA PEVYPPPPRTANVLQTSPIKERSPRIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
BLAST of Cp4.1LG00g09390.1 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 1.8e-45 Identity = 130/272 (47.79%), Postives = 153/272 (56.25%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.3e-16 Identity = 83/208 (39.90%), Postives = 107/208 (51.44%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 4.2e-10 Identity = 73/185 (39.46%), Postives = 98/185 (52.97%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. TrEMBL
Match: A0A0A0L8G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09 Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. TrEMBL
Match: V4LHP3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001731mg PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 7.9e-09 Identity = 78/254 (30.71%), Postives = 113/254 (44.49%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. TAIR10
Match: AT2G46630.1 (AT2G46630.1 unknown protein) HSP 1 Score: 61.6 bits (148), Expect = 6.4e-10 Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo]) HSP 1 Score: 192.2 bits (487), Expect = 8.9e-46 Identity = 132/272 (48.53%), Postives = 159/272 (58.46%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus]) HSP 1 Score: 190.7 bits (483), Expect = 2.6e-45 Identity = 130/272 (47.79%), Postives = 153/272 (56.25%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus]) HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16 Identity = 83/208 (39.90%), Postives = 107/208 (51.44%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. NCBI nr
Match: gi|659074886|ref|XP_008437848.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo]) HSP 1 Score: 87.4 bits (215), Expect = 3.1e-14 Identity = 75/207 (36.23%), Postives = 107/207 (51.69%), Query Frame = 1
BLAST of Cp4.1LG00g09390.1 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo]) HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11 Identity = 80/205 (39.02%), Postives = 103/205 (50.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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