Cp4.1LG00g09390 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g09390
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaA09g55540D protein
LocationCp4.1LG00 : 29146948 .. 29149506 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGGAAGTTTATCCACCGCCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCCCATCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGACCAGTGCTTTAGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAATATTCCACCTCCACTCTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATGTATGTATGTATGTATATGCATATAAAAAATGTAAGAGTCTAGTTCTTTTCGATCTTACAATCCACCTTCTTTGTGATCTAGTGTTCTCGCTAACATTCGTTCACTTTTTTAATTGACGTGGGACCCTCCCAATCTATCCCCTTCCATGCTCAACATTCTTTCTGGCACACTGTCTCGTGTCTACCCCCTTCCAATCGATGTGGGACTCCTCCCAATCCACCCCCTTTCAATCTCCCGTGTTTTGCTGGCACATTGCCTTATGTCCAACCCCTTTGGAGTTTAGGGTCCTCGTTGGTACATCACCAAGAGTGTTTTGTTCTCCTACCCAACCGATGTCGGATCTCACAATCCATTCTCTTTCGGGGCCTAGCATCCTCGTTGTCACTCGTTTCCTTCTCTAATCGATGTGGGACCCTCCTAATCCACTCTCTTCAAGGCCCAGCATCCTTGCTAGCACTCATTCCCTTCTCTAATCGATGTGGGACCATCTCAATCCACCCTCCTCAGGGCCCAGCATCCTCGCTGGCACTCGTTCCCTTCTCTAATCAATGTGAGACTCTCTCAATCCACTCCCTACGGGACCTGGTGTCTTTGCTGGCACACCGCCTCGTGTCGACCCCCCTTTAGGATTCAGCCTCCTCGCTAGCACATAGCTCGGTATCTGTCTCTGATACCAACTGCAACAGTTCAAACCCATCGCTAGCAGATACTGTCCTCTTTGAACTTTTTATTTCAAGTTTTCCCTCAAAGTTTTTAAAACGTGTCTACTAACAGAGGTTTCCACACCCTTATAAACAATGTTTTATTCTCCTTCCTAACAGATGCAGGATCTCAAAAAAAAAAAAAAAAAAACGTCTTAGTGTTATGATGTTATATTCTTAAACAGGTCCAGCAGAAATCGGTGCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCCAGGCACTGA

mRNA sequence

CCGGAAGTTTATCCACCGCCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCCCATCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGACCAGTGCTTTAGCTTCTCCTAAAACCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCCAGGCACTGA

Coding sequence (CDS)

CCGGAAGTTTATCCACCGCCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCCCATCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGACCAGTGCTTTAGCTTCTCCTAAAACCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCCAGGCACTGA

Protein sequence

PEVYPPPPRTANVLQTSPIKERSPRIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
Homology
[Close]
BLAST of Cp4.1LG00g09390 vs. TrEMBL
Match: A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-45
Identity = 130/272 (47.79%), Postives = 153/272 (56.25%), Query Frame = 1 

Query: 1   PEVYPPPPRTANVLQTSPIKERSPRIPSPVR----------------------------- 60
           PEV+P    T N  QTSPIK+R+PR+ SPV+                             
Sbjct: 37  PEVFPSAVPTTNTFQTSPIKQRTPRLSSPVKKFSSPPSSPKYSGAGTVSPRKPLSPPPVH 96

Query: 61  -----------------------KYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGER 120
                                    P  P+ P++     + +P  PL+ P +  R + E 
Sbjct: 97  NRYEGERRTSATTSPKTFKPTHISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEH 156

Query: 121 RTSALASPK------------TEKPAKTDH--RASEYSSGKPQQKQTHQQ-QSDVINIKG 180
                + P+            TEKP KTDH  +  EY + KPQQKQ HQQ QSDVINIKG
Sbjct: 157 SLRPRSPPEIEQKKILYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKG 216

Query: 181 ENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSIL 205
           ENVGAVMHITQSSD +E  KKKPTV  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSIL
Sbjct: 217 ENVGAVMHITQSSDGSEVIKKKPTVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSIL 276

[Close]
BLAST of Cp4.1LG00g09390 vs. TrEMBL
Match: A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-16
Identity = 83/208 (39.90%), Postives = 107/208 (51.44%), Query Frame = 1 

Query: 7   PPRTANVLQTSPIKERSPRIPS-PVRKYPSPPTSPKYRAAAPS--TSPRKPLSPPPTYNR 66
           PPR A      P+    P  P+  ++K  SPP+SP YRA A    +SP K +   P Y  
Sbjct: 53  PPRVALRRDDQPL----PASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKP 112

Query: 67  YDGERRTSALASP------KTEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVG 126
               R   A   P        EK  K+D     + S K       Q Q + INIKGENVG
Sbjct: 113 NTQPRSPEAKQKPGIFHKSTVEKVTKSDRY---HESSKTLSSHKGQLQPNAINIKGENVG 172

Query: 127 AVMHITQSSDATETH---KKKPTVS--------YSSENEKDSNKSSSNMPGKSFMNSNFQ 186
           AVM I +SS     H   K K T           + +N + S   +S+MP  +F+NSNFQ
Sbjct: 173 AVMEIVESSKREGGHMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQ 232

Query: 187 GVNNSILYNSSLSHRDPGLHLAFTKKPT 195
            VNNS+LYN++L+HRDPGLHLAF++ PT
Sbjct: 233 SVNNSLLYNANLTHRDPGLHLAFSRNPT 253

[Close]
BLAST of Cp4.1LG00g09390 vs. TrEMBL
Match: A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.2e-10
Identity = 73/185 (39.46%), Postives = 98/185 (52.97%), Query Frame = 1 

Query: 35  SPPTSPKYRAAAPSTSPRKPLSPPPTY----------NRYDGERRTSALASPKT--EKPA 94
           +PP +P  ++    TSP  PL+ P +            R   E  T  +   K   EKP+
Sbjct: 102 TPPLTPA-KSRPAKTSPLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVYNKAADEKPS 161

Query: 95  KTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDAT----ETHKKKPTV 154
           K++ R SE+ SGK   ++  QQ+  V+ +KG NVGAVM + +SS       ET KKK T 
Sbjct: 162 KSN-RQSEHGSGKSVHQK--QQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKKKETE 221

Query: 155 S------YSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKK 198
                  Y  E++K   K     P  +FMNSNFQ VNNS+L++SS  HRDPGLHL+F   
Sbjct: 222 DDGDVDGYGHEDKKTGRKKKP--PISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSF--- 277

[Close]
BLAST of Cp4.1LG00g09390 vs. TrEMBL
Match: A0A0A0L8G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 1 

Query: 7   PPRTANVLQTSPIKERSPRIPSPVRKYPSPPTSPKYRAAAP--STSP---RKPLSPP-PT 66
           PP  +   + + I+E SP    P++   SPP SP  ++  P  S SP   ++PL P  P+
Sbjct: 71  PPAASPKYEATVIREASP----PLKPARSPPVSPPRKSVDPRHSISPNSYQEPLKPTRPS 130

Query: 67  YNRYDGERRTSALASPKTEKPA---KTDH-RASEYSSGKPQQKQTHQQQSDVINIKGENV 126
            +     +       P   KP    KTD  + S+        K     Q+  IN+ G+N+
Sbjct: 131 LSTLALPKSADVTTVPSAIKPEVEQKTDSFKKSDRQVDNVSAKPPPSLQAKAINLTGDNI 190

Query: 127 GAVMHITQSSDATE----THKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSI 186
           GAVM I Q SD       T K +       EN+ + ++  +  P     NSNFQ VNNS+
Sbjct: 191 GAVMKINQFSDKISGGEVTRKIETKTGVQQENDMEKSRRETEFPMTPITNSNFQEVNNSV 250

Query: 187 LYNSSLSHRDPGLHLAFTKKPTHADSVHDSR 204
           +YNSS S RDPGLHL F+ +   A +V  ++
Sbjct: 251 MYNSSCSGRDPGLHLDFSGQKDEAATVDGNK 277

[Close]
BLAST of Cp4.1LG00g09390 vs. TrEMBL
Match: V4LHP3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001731mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.9e-09
Identity = 78/254 (30.71%), Postives = 113/254 (44.49%), Query Frame = 1 

Query: 5   PPPPRTANVLQTSPIKERSPRIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSP------- 64
           P PPR++ +   SP + +    P      PSP  S +   +  S SPRK  SP       
Sbjct: 115 PQPPRSSYMPPPSPKEVQEALPPRKPTSPPSPAHSTRSMKSESSESPRKAASPRVLSPYS 174

Query: 65  -PPTYNRYDGE---------RRTSALASPKTEKPAKTDHRASEYSSGKPQ---QKQTHQQ 124
            PP+    + E          +TS L  P   +    +H  ++  +   Q    K+TH Q
Sbjct: 175 LPPSQLHSERETTQKIILTAEKTSQLYEPNHHENQNYNHNHNQNQNHNHQGNNTKKTHHQ 234

Query: 125 QSD-----------VINIKGENVGAVMHITQS-----------------SDATETHKKKP 184
           QS            VI I GEN GAVM I +S                 + A E  ++  
Sbjct: 235 QSSFSDSENIMGTRVITIAGENKGAVMEILRSPSNNKTGGTGPHSSRVLNGAGEKGRRLQ 294

Query: 185 TVSYSSENEKDSNK----------SSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLH 201
           + S SS +E +  K          ++SN+P K+FMNSN Q +NNSI+YNS+ +H DPG+H
Sbjct: 295 SSSSSSSDEGEGKKKTTKNRNNTSNNSNLPMKAFMNSNVQMINNSIVYNSTATHHDPGVH 354

[Close]
BLAST of Cp4.1LG00g09390 vs. TAIR10
Match: AT2G46630.1 (AT2G46630.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-10
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1 

Query: 117 GAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNS 176
           G  +  + SS + E   KK T       +   NK +SN+P K+FMNSN Q +NNSI+YNS
Sbjct: 305 GRRLQSSSSSSSDEGEGKKKTT------KNVPNKGNSNLPMKAFMNSNVQMINNSIVYNS 364

Query: 177 SLSHRDPGLHLAFTKKPTHADSVHDS 203
           + SH DPG+HL  ++KP   +  H S
Sbjct: 365 TASHHDPGVHLKISRKPGSDNGFHVS 384

[Close]
BLAST of Cp4.1LG00g09390 vs. NCBI nr
Match: gi|659074888|ref|XP_008437849.1| (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 8.9e-46
Identity = 132/272 (48.53%), Postives = 159/272 (58.46%), Query Frame = 1 

Query: 1   PEVYPPPPRTANVLQTSPIKERSPRIPSPVR----------------------------- 60
           PEV+P    T N LQTSP+K+R+PR+ SPV+                             
Sbjct: 38  PEVFPSAVPTTNTLQTSPVKQRTPRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPST 97

Query: 61  ---------------------KYPSPPTSP---KYRAAAPSTSPRKPLSPPPTYNRYDGE 120
                                 Y SPP SP   K+  AA   +P  PL+ P +  R + E
Sbjct: 98  YNRHDGERRTSATTSPKTFKPTYISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPE 157

Query: 121 RRTSALASPK------------TEKPAKTDHRASE-YSSGKPQQKQTHQQ-QSDVINIKG 180
           R     + P+            TEKP KTD+R ++ Y + KPQQKQ HQQ QSDVINIKG
Sbjct: 158 RSIRPRSPPEIEQKKILYQTTTTEKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKG 217

Query: 181 ENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSIL 205
           +NVGAVMHITQSSD +E  KKKP+V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSIL
Sbjct: 218 DNVGAVMHITQSSDGSEILKKKPSVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSIL 277

[Close]
BLAST of Cp4.1LG00g09390 vs. NCBI nr
Match: gi|449432016|ref|XP_004133796.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 2.6e-45
Identity = 130/272 (47.79%), Postives = 153/272 (56.25%), Query Frame = 1 

Query: 1   PEVYPPPPRTANVLQTSPIKERSPRIPSPVR----------------------------- 60
           PEV+P    T N  QTSPIK+R+PR+ SPV+                             
Sbjct: 37  PEVFPSAVPTTNTFQTSPIKQRTPRLSSPVKKFSSPPSSPKYSGAGTVSPRKPLSPPPVH 96

Query: 61  -----------------------KYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGER 120
                                    P  P+ P++     + +P  PL+ P +  R + E 
Sbjct: 97  NRYEGERRTSATTSPKTFKPTHISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEH 156

Query: 121 RTSALASPK------------TEKPAKTDH--RASEYSSGKPQQKQTHQQ-QSDVINIKG 180
                + P+            TEKP KTDH  +  EY + KPQQKQ HQQ QSDVINIKG
Sbjct: 157 SLRPRSPPEIEQKKILYQTTTTEKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKG 216

Query: 181 ENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSIL 205
           ENVGAVMHITQSSD +E  KKKPTV  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSIL
Sbjct: 217 ENVGAVMHITQSSDGSEVIKKKPTVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSIL 276

[Close]
BLAST of Cp4.1LG00g09390 vs. NCBI nr
Match: gi|449432014|ref|XP_004133795.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16
Identity = 83/208 (39.90%), Postives = 107/208 (51.44%), Query Frame = 1 

Query: 7   PPRTANVLQTSPIKERSPRIPS-PVRKYPSPPTSPKYRAAAPS--TSPRKPLSPPPTYNR 66
           PPR A      P+    P  P+  ++K  SPP+SP YRA A    +SP K +   P Y  
Sbjct: 53  PPRVALRRDDQPL----PASPTYSIKKATSPPSSPSYRAPAARGISSPTKTVDEYPKYKP 112

Query: 67  YDGERRTSALASP------KTEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVG 126
               R   A   P        EK  K+D     + S K       Q Q + INIKGENVG
Sbjct: 113 NTQPRSPEAKQKPGIFHKSTVEKVTKSDRY---HESSKTLSSHKGQLQPNAINIKGENVG 172

Query: 127 AVMHITQSSDATETH---KKKPTVS--------YSSENEKDSNKSSSNMPGKSFMNSNFQ 186
           AVM I +SS     H   K K T           + +N + S   +S+MP  +F+NSNFQ
Sbjct: 173 AVMEIVESSKREGGHMIKKIKETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQ 232

Query: 187 GVNNSILYNSSLSHRDPGLHLAFTKKPT 195
            VNNS+LYN++L+HRDPGLHLAF++ PT
Sbjct: 233 SVNNSLLYNANLTHRDPGLHLAFSRNPT 253

[Close]
BLAST of Cp4.1LG00g09390 vs. NCBI nr
Match: gi|659074886|ref|XP_008437848.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-14
Identity = 75/207 (36.23%), Postives = 107/207 (51.69%), Query Frame = 1 

Query: 7   PPRTANVLQTSPIKERSPRIPSP----VRKYPSPPTSPKYR--AAAPSTSPRKPLSPPPT 66
           PPR +       +++  P +P+     ++K  SPP+SP YR  AA   +SP K +   P 
Sbjct: 53  PPRIS-------LRKDDPPLPASPTYSIKKATSPPSSPPYRGMAAREISSPPKMVDEYPK 112

Query: 67  YNRYDGERRTSALASPKTEKPAKTDH--RASEYSSGKPQQKQTHQQQSDVINIKGENVGA 126
           Y      R   A   P   K    +   ++  Y            QQ + INIKGENVGA
Sbjct: 113 YKPITQPRSPEAKQKPGIHKTTTVEKVTKSDRYHEPSKAVSSHKGQQPNAINIKGENVGA 172

Query: 127 VMHITQSSDATETH---KKKPTVS--------YSSENEKDSNKSSSNMPGKSFMNSNFQG 186
           VM I +SS     H   K K T           + +N + S  ++S+MP  +F+NSNFQ 
Sbjct: 173 VMEIVESSKREGGHMIKKIKETARGILNNNDMANDQNNEASKTTNSSMPTNTFLNSNFQS 232

Query: 187 VNNSILYNSSLSHRDPGLHLAFTKKPT 195
           VNNS+LYN++L++RDPGLHL+F++ PT
Sbjct: 233 VNNSLLYNANLTYRDPGLHLSFSRNPT 252

[Close]
BLAST of Cp4.1LG00g09390 vs. NCBI nr
Match: gi|659074890|ref|XP_008437851.1| (PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 80/205 (39.02%), Postives = 103/205 (50.24%), Query Frame = 1 

Query: 14  LQTSPIKERSPRIPSPVR-KY-------PSPPTSPKYRAAAPSTSPRKPLSPP------- 73
           L  SP  + +   P  VR KY        +PP SP  ++    T P  PL+ P       
Sbjct: 81  LDRSPAAKATMSPPDSVRDKYFERRNGETTPPLSPA-KSRRAKTPPLSPLALPRNQVFTG 140

Query: 74  ---PTYNRYDGERRTSALASPKT-EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGE 133
                  R   E  T  +   KT EKP+K++  + EY S K  QK+   Q+ +VI +KG 
Sbjct: 141 NGTTAQPRVQPEVETKGIVYNKTVEKPSKSNRSSGEYGSSKSHQKK---QKPEVIKLKGH 200

Query: 134 NVGAVMHITQSSD----ATETHKKKPTV------SYSSENEKDSNKSSSNMPGKSFMNSN 190
           NVGAVM I +SS       ET KK  T        Y  E++K   K     P  +FMNSN
Sbjct: 201 NVGAVMEINKSSTGYRLGGETLKKNETEDVGDVHGYGHEDKKTETK-KKEPPITAFMNSN 260

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g09390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g09390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5T3_CUCSA1.8e-4547.79Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119290 PE=4 SV=1[more]
A0A0A0L3R5_CUCSA2.3e-1639.90Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119280 PE=4 SV=1[more]
A0A0A0L320_CUCSA4.2e-1039.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119300 PE=4 SV=1[more]
A0A0A0L8G8_CUCSA3.6e-0933.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119310 PE=4 SV=1[more]
V4LHP3_EUTSA7.9e-0930.71Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001731mg PE=4 SV=1[more]
BLAST of Cp4.1LG00g09390 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46630.16.4e-1043.02 unknown protein[more]
BLAST of Cp4.1LG00g09390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074888|ref|XP_008437849.1|8.9e-4648.53PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me... [more]
gi|449432016|ref|XP_004133796.1|2.6e-4547.79PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus][more]
gi|449432014|ref|XP_004133795.1|3.3e-1639.90PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus][more]
gi|659074886|ref|XP_008437848.1|3.1e-1436.23PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis melo][more]
gi|659074890|ref|XP_008437851.1|1.9e-1139.02PREDICTED: serine/arginine repetitive matrix protein 1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG00g09390.1Cp4.1LG00g09390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33472FAMILY NOT NAMEDcoord: 75..193
score: 1.1
NoneNo IPR availablePANTHERPTHR33472:SF1EXTENSIN-RELATEDcoord: 75..193
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG00g09390Cucumber (Chinese Long) v3cpecucB0010
Cp4.1LG00g09390Cucurbita pepo (Zucchini)cpecpeB001