CmoCh20G000650.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G000650.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lipoxygenase 2, chloroplastic
Location	Cmo_Chr20 : 358025 .. 364533 (+)
Sequence length	402

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCACTGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAGGGTTCTATAGATAATATATTATGGGGATGAGGAGCATATAATAATACATAGGGGGAGATTATATTATGGGGATGAGGAGCATACAATAATATATAGGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACAGGGAGTTCCATACAGCGTTTCCAGTAAACTTGGGGTTATTGAGCTCACCAACTGATGCCCATCCATGTTGGGATTGCCAAACCCCATGTGCTTCCCCATCACTGGTACGTTTTCTTTTCCTTTTTGAAAAACAAAATTTGTCACAACGTTACTTACCCTACTCTTTTTTTAATTTTAAACATTCTTATCACAACATTAACCTTTTTGAAGTCATCACCAATTTGAAATATTATAAGGTTTAGGGTTTTGTCGTTGTTGTTTTAGCATCCCTAACTCACCTCCGTGTGTTTCACGTGACAACCCATACCCATTCTTCTAATCTGTGTCTCGCGTGAGTACCCTTTAGGTCATTTCCCCCTGTGAATGTTTGCTGAATCACCACACCTCAATGGGGGTGAGAGTTCTCTTATTTATAATTATTTTCAGAATACAGAAATATGGTAAATTACAAATATTATGGAAATAGTAATAAAAGGAAAGAATAATAAATGAATGCAATATATTTGCCTTTAATAAGAGGGCAAATATGGTAACCCGTAATGTAAGGCAAATATCTAGATATTTGCCTTATAGTGACGGTCAACTATCCTTAACACCCCCCCGCAAGCTGAGCGTCGGATTTGAACGAACGTAAAGCTTGGATCTGAAAAATTCAAAGAGAGGTCGAGAAATACTCTTTGTGAAGATGTCAGCAACTTGGAGATGAGAGGGTACATATTGTGTGCGAAGTTTGCCAGCGATAACAAGTTCTCGAAGGAAATGATAATCTAGTTCAACATGTTTGGCCCGCTTGTGAGAAACGGGATTAGAGCTCAAAAAAATAGCACTTTTGTTGTCACATAAGAGTAAGGGCTGCTTTGAAATAGGGACCTTGAGGTCATGCAAAAGATGCGTAACCCAAAGAAGTTCAGCAGCGGTTGTGGCAAGAGCACGATACTCAGATTCACAGCTGGAGCGTGAGACAGTAGGTTGCTTTTTGGCACTCCAAGAAACCAGATTGTTACCAAGATAAATAGAATAGCCGGATGTAGAACGACGAGTATCGGGACAACCAGCCCAGTCAGCATCCGAATAAGCGACTAGCGTACTAGGAACATTGGATGGACGAAAGGTAAGACCAAAGTGGAGTGTTCCTTTGACATAGCGAAGAATACGTTTGACAGCAAGAAAGTGATCTGCAGTAGGGGCATGCAAGAATTGACTGACAGAATTGACAGCATAGGCAATATCTGGACGCGTAATAGTCAAGTACTGAAGGGCGCCAACAAGAGATCTGTAGAGAGTAGGATCAGAGAAAGGAGAACCATCAGCAGTCAAGTGTTGAGAAACAACCATAGGAGTGTGAACTGGTTTGCTATCGAGCAACTGAGCACGAGTAAGAATATCTCGAGCATATTTTAACTGACTAATAAAGAGACCATCAGGAGTGGGTGAAGCTTCAAGACCAAGAAAGTAACTGAGAGAACCCAAATCTTTGGTAGCAAACTCAGAATGAAGCTTGCGAGTAAAGCTGTCAATAAGAGATGAGTTGTTGCCGGTAACAATAATGTCATCAACATAAAGAAGCAAATAGATAATGTTAGATTGCTGATGAAAGACAAAAAGGGACGTGTCAGCGCGACTGCAAGAAAACCCAAGTGTGAGAAGAAATGAGCTAAAACGCTGAAACCAAGCACGAGGAGCTTGCTTTAAACCATAGAGGGCTTTCTTTAATAGACAAACATGAGTGGGAAATCGAGGATCAATATACCCAGGAGGTTGTTCCATATGAACACGTTCAATAAGAGTTCCATTGAGAAAAGCATTCTTGACATCAAGTTGTCGAAGAGGCCATTTATTTGTGACTGCAATAGAAAGCACAACACGGACAGTGGTAGCTTTGACAACCGGACTGAAAGTGTCAGTGTAGTCAAGACCAGGAACCTGAGTATAACCTTTGGCAACAAGACGAGCCTTGAAACGCTCGACAGATCCATCAGGCAAATATTTAATACGAAACACCCATTTAGAGCCCACGATGTTGGTGTTAGCAGGGCGAGGAACCAAAGTCCAAGTATCATTTTGTTGTAATGCTTGAATTTCTTCATCCATGGCAGCCACCCAAGCAGGATTCTTAGCCGCAGATTTGAATCCTTTTGGCTCAGTGGATGCAAGAAGAGCAGAAAGAAGTCCAGATGAGCCCAAAATACCAAGATTTGCTGGATGACGAGTCTTGAATATACCAGCTTTGGCTCGTGTGATCATAGGATGAGTGCCCAAAGAAGAGAAATCAACAGGAGGTTCAATAGAGGTCGAATTAGAAGTCGAAGGTGGCAAAGTGGAACCTGCAAGAGAAGTATCAACCTGCACAGACTCATCTACAAGGTCAGAACAAATATCACACGGGGATGAACTGGATCGAGGAGTTTGCGGTGATGAAGTGGTAGGGGGGGATGAATCAATATGATGAAAATGTGGTTCTAAGAAATTTGAAATAGGAATAGAGGAAAGAGGTTGGGTCTGGGAGCTAGGGATAGCAGGAAAGTGGGTTTCATCAAATTGAGCATGACAGGTGATATATAGCTTAGTGGTGGCCGGATCAAGACAGCGAAACCCTTTATGAGCAGGACTATAACCCAAAAAAATACAAGGAATGCTGCGGGGAGAAAGCTTGTTAGGCATATAATCACGCAAATAAGGATAAACACGACAACCAAAGGGATGAAAATTGTCATAATGTGGAGTGTAGCCATAAAGGAGTTCAAAGGGTGACTTACCTCCAAGAAGTGGAGTAGGCAACCGGTTGATAATATAAGCTGCAGTGCTGAAGGCGTCAACCCAAAAACGAGAAGAAAGATGAGAGTGAAAGAGAAGGGCCAAGCCAGTCTCAGTCACATGACGATGTTTTCTCTCAGCACGACCATTTTGAGCAGGTGTATATGGACAAGAGAGTTGATGGTGGATGCCAGAATTACGTAAATGAGTTTTGAAACAAGTATTAGTAAATTCGGTACCACCATCACTTTGAAATACCTTGATACGAGAAGAATATTGATTTTCCACAAATTTTTGAAATTGAAGAAAAATATCAAAAAAATCAGATTTAAATTTTAAAGGGTAAAACCAAGTGAATCGAGAATAATCATCAATAAAAATAACATAATAAAGGAAACCCGAATTTGATTTGACGGGAGAAGGACCCCAAAGATCACAATGAATAAGATCTAACACATGAGACGACCTACGTTCATTGCGGGAATAAGGCAATCGATGACTTTTTGCAAGCTGACAGGTATTACATAATGATGGAGAAGGCAATAAAGACGTAAGAGAAAGATGACCTTTTCTATTTAAAAAAGAAATAACAGAATGATTCACATGACCTAGACGAGCATGCCATAAATCATATGAAGCACGTAAAGATTTGTTTCTAAGGGCTGAAATAAAAGCAGAGTTGCCGCGCTCCAGCACATATAGCCCTCCATCTCTTTTACCGGTTGCCACCACCCTTCCTGTTTGACGATTCTGGATAGTAATAAGATTATTAGTAAATGTAACGGAGAGAGGAAAATCAGACGTTAATTTACTTATGGAAAGAAGATTTTTAGTGAGGTGAGGGACAACCAAGACATCTAACAAGTGAATATTTGGAACAGGTGAAAGAGTACCGGTGTGGGTAATGGGTAGGGAAGCACCGTTTCCTACAATCACAGAGTCCTTACCCGTGTAATTTTTAGACTGATCCAAAATAGATGGGTCGGCAGTCATATGGGCCGAAGCTCCAGTGTCCAGAAACCAATCAGCAGTATCGGGTCCAGCAATAGAACATGACGTGTTAAAGGCTTCAGCAAGGTGAGCATGAGAAGAATCAGGTCGAACATACCGTTGGTTGCAGCGGTCAGCATAATGGCCCTCTTTGCGGCATATTTGGCAGTGAGGTGGTCGACGACCTTGACTTGAGTGGGTTCGTCCTCGATTAGAAGAGTTATTTTTGTGAGAATAAGAACGACCTCGCTGGTTGGTAAAGGAAGCAGGGTGGCTTCCATGGGTGCGACCACGATTAGTGACTGTGAATGCTGTAGGAGTGGAGTTAGAGGACTCAAGGGAGAGCTGAAACAACTCAAAACTTTCAGCTTTAGAGACTAAATCTGCAAAACAGGGGATAGAGGTAAGAGCCATCTGAGCAGTAGAAAAAGCTGAAAATTCGGTGCCGAGTCCACGAAGGAACCAGTGCACTTTATCAATGTCCTCGACCGGTCTGCCAATGGCATGAAGTTGGTCACAAATTTTTTTGAAGGCACGGGCATACTCAGCAACAGGTTTGGTGCCACGTTTCATCAACTGCAAGTCATCCTTGAGTCTCAGTTCACGAGCTTTCGACTGATGGCTGAACGTAGTTTCCAACGCAAGCCAAACATCACGTGCAGTAGGGAGACCAACGACAACAGCCATGGCTTCCTCAGTGAGAGAGGAGAGCAGGAGACAGAGAAGTCGTTGATCGGCTGCTCTCCATGCCAAATATTTGGGGTTGAGTGTTGAAGAGGTTTCTGGTTCAAAGCGAGGTGGTGGAACCCTGGTTCCATCGACATAGCCCAGCATGTCTTGACTCTCAAGAAGAGGGAGAAGTTGGCTTTTCCAAAGAAGATAATTGGAGGAAGAAAGTTTGATGGTGATCATATGGATTAGAGTATTGAAAGGAAGAAGATGATAAGAAGATTCGGAAGCCATAGAGAAGAAAGGATCAGGGTTGTTAAACCGAAAGGGCTCTGATACCATGTGAATGTTTGCTGAATCACCACACCTCAATGGGGGTGAGAGTTCTCTTATTTATAATTATTTTCAGAATACAGAAATATGGTAAATTACAAATATTATGGAAATAGTAATAAAAGGAAAGAATAATAAATGAATGCAATATATTTGCCTTTAATAAGAGGGCAAATATGGTAACCCGTAATGTAAGGCAAATATCTAGATATTTGCCTTATAGTGACGGTCAACTATCCTTAACACCCCCAACACATGTTACTTCAGATTTAAGGATACACAGGATATTTTATACCTTAGCTGTAGATTTTGTTGTTTAACCAAAATTCCACACGCTTCCTCGTCCCTCACTCACAACCTCCCAAAGCTGAGCACACACTGCAAAGCTGGAGGTTGGAGTTATGTATATATCCATCATCACAACAAGGAAACCAAAAGTAAATTGAATGGAGGCGGTGGGATTGGTATGAAATATCCACAATGGTGTGGTTGCTTTGCACCCCGTCCCCACGACTCCAATAGATATTTCCTTCCAAAATTGACAATTACTTTTCACACGTTTTTTTCGTGCCTTCACTTCTCTTCTCTCTCTCTCTCATTCTAACATTTAACAACGTATCAAATACAAAATACAAACCACAAATCACATCAACTCCATTCATTCCTCTCTCTCTCTCTTACTCCCTTCATAAATTAAATATCCACGAATTGTTTTATAGAATAAAAAACAGCATTGAGCTTGGTATAATATGTTACTTACCAGGTTCATCTCCTTTGTTTCATGGTGTTTTTAAAATCATTTATATATATATATTGATGAGTATATTTCAGAATTTTAGGATGTAATTGCAATTCATCCTAAAAACGGAGGGTATCAATGTAATTTAACCTACTGTTTTATTTCTTGGTGATTGAATTTCGATTATACAGGTGGTACAAAAAAATATCTTGTAAATAGGGACAAAGACGTCCGATAGTGCCCATTCCGGAGAAAAGAAGATATTGCGAAACTCTCGAACAATTATTTTAAGCGTATTCCTTTGATTGGCCGGAATTCAGATATTTATACAAACGTCTTAATACATTTTTGGAAGTTTATAGTATATGTCACAACTTTCACTGCTCCTCTCTACACTTTTTGTTCGTTTTTATTTGGTAAACTTTTTCTTTTTTCTTTTTTTCTTTTTTATAGAAAATTTATAGGAGATATTTTTTTTTTTAAATATTTCGTAACTATTCTATTCATCTCTCATTTATTTAAATGGATTTTTTTTCAATAATATAAATGAGATGTTTATCACTCACATGGTAATTATACAGACAAATAATGTTGATTTGTTAAAGCATGCGTAA

mRNA sequence

ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCACTGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAGGGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACAGGGAGTTCCATACAGCGTTTCCAAATTTTAGGATGTGGTACAAAAAAATATCTTACAAATAATGTTGATTTGTTAAAGCATGCGTAA

Coding sequence (CDS)

ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCACTGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAGGGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACAGGGAGTTCCATACAGCGTTTCCAAATTTTAGGATGTGGTACAAAAAAATATCTTACAAATAATGTTGATTTGTTAAAGCATGCGTAA

Homology

[Close]

BLAST of CmoCh20G000650.1 vs. TAIR10
Match: AT3G45140.1 (AT3G45140.1 lipoxygenase 2)

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 1


Query: 12  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND 47
           + FA DGLILWDA+ EW+T+Y  H Y DE  + +D
Sbjct: 664 YPFANDGLILWDAIKEWVTDYVKHYYPDEELITSD 698

The following BLAST results are available for this feature:

BLAST of CmoCh20G000650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000650.1 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000650.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45140.1	2.1e-06	54.29	lipoxygenase 2	[more]

BLAST of CmoCh20G000650.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013819	LipOase_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh20G000650	CmoCh20G000650	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000650.1	CmoCh20G000650.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000650.1.exon.1	CmoCh20G000650.1.exon.1	exon
CmoCh20G000650.1.exon.2	CmoCh20G000650.1.exon.2	exon
CmoCh20G000650.1.exon.3	CmoCh20G000650.1.exon.3	exon
CmoCh20G000650.1.exon.4	CmoCh20G000650.1.exon.4	exon
CmoCh20G000650.1.exon.5	CmoCh20G000650.1.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000650.1.CDS.1	CmoCh20G000650.1.CDS.1	CDS
CmoCh20G000650.1.CDS.2	CmoCh20G000650.1.CDS.2	CDS
CmoCh20G000650.1.CDS.3	CmoCh20G000650.1.CDS.3	CDS
CmoCh20G000650.1.CDS.4	CmoCh20G000650.1.CDS.4	CDS
CmoCh20G000650.1.CDS.5	CmoCh20G000650.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 13..47 score: 3.
IPR013819	Lipoxygenase, C-terminal	unknown	SSF48484	Lipoxigenase	coord: 12..64 score: 5.2