CmoCh20G000650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G000650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Lipoxygenase 2, chloroplastic
Location	Cmo_Chr20 : 358025 .. 364533 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCACTGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAGGGTTCTATAGATAATATATTATGGGGATGAGGAGCATATAATAATACATAGGGGGAGATTATATTATGGGGATGAGGAGCATACAATAATATATAGGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACAGGGAGTTCCATACAGCGTTTCCAGTAAACTTGGGGTTATTGAGCTCACCAACTGATGCCCATCCATGTTGGGATTGCCAAACCCCATGTGCTTCCCCATCACTGGTACGTTTTCTTTTCCTTTTTGAAAAACAAAATTTGTCACAACGTTACTTACCCTACTCTTTTTTTAATTTTAAACATTCTTATCACAACATTAACCTTTTTGAAGTCATCACCAATTTGAAATATTATAAGGTTTAGGGTTTTGTCGTTGTTGTTTTAGCATCCCTAACTCACCTCCGTGTGTTTCACGTGACAACCCATACCCATTCTTCTAATCTGTGTCTCGCGTGAGTACCCTTTAGGTCATTTCCCCCTGTGAATGTTTGCTGAATCACCACACCTCAATGGGGGTGAGAGTTCTCTTATTTATAATTATTTTCAGAATACAGAAATATGGTAAATTACAAATATTATGGAAATAGTAATAAAAGGAAAGAATAATAAATGAATGCAATATATTTGCCTTTAATAAGAGGGCAAATATGGTAACCCGTAATGTAAGGCAAATATCTAGATATTTGCCTTATAGTGACGGTCAACTATCCTTAACACCCCCCCGCAAGCTGAGCGTCGGATTTGAACGAACGTAAAGCTTGGATCTGAAAAATTCAAAGAGAGGTCGAGAAATACTCTTTGTGAAGATGTCAGCAACTTGGAGATGAGAGGGTACATATTGTGTGCGAAGTTTGCCAGCGATAACAAGTTCTCGAAGGAAATGATAATCTAGTTCAACATGTTTGGCCCGCTTGTGAGAAACGGGATTAGAGCTCAAAAAAATAGCACTTTTGTTGTCACATAAGAGTAAGGGCTGCTTTGAAATAGGGACCTTGAGGTCATGCAAAAGATGCGTAACCCAAAGAAGTTCAGCAGCGGTTGTGGCAAGAGCACGATACTCAGATTCACAGCTGGAGCGTGAGACAGTAGGTTGCTTTTTGGCACTCCAAGAAACCAGATTGTTACCAAGATAAATAGAATAGCCGGATGTAGAACGACGAGTATCGGGACAACCAGCCCAGTCAGCATCCGAATAAGCGACTAGCGTACTAGGAACATTGGATGGACGAAAGGTAAGACCAAAGTGGAGTGTTCCTTTGACATAGCGAAGAATACGTTTGACAGCAAGAAAGTGATCTGCAGTAGGGGCATGCAAGAATTGACTGACAGAATTGACAGCATAGGCAATATCTGGACGCGTAATAGTCAAGTACTGAAGGGCGCCAACAAGAGATCTGTAGAGAGTAGGATCAGAGAAAGGAGAACCATCAGCAGTCAAGTGTTGAGAAACAACCATAGGAGTGTGAACTGGTTTGCTATCGAGCAACTGAGCACGAGTAAGAATATCTCGAGCATATTTTAACTGACTAATAAAGAGACCATCAGGAGTGGGTGAAGCTTCAAGACCAAGAAAGTAACTGAGAGAACCCAAATCTTTGGTAGCAAACTCAGAATGAAGCTTGCGAGTAAAGCTGTCAATAAGAGATGAGTTGTTGCCGGTAACAATAATGTCATCAACATAAAGAAGCAAATAGATAATGTTAGATTGCTGATGAAAGACAAAAAGGGACGTGTCAGCGCGACTGCAAGAAAACCCAAGTGTGAGAAGAAATGAGCTAAAACGCTGAAACCAAGCACGAGGAGCTTGCTTTAAACCATAGAGGGCTTTCTTTAATAGACAAACATGAGTGGGAAATCGAGGATCAATATACCCAGGAGGTTGTTCCATATGAACACGTTCAATAAGAGTTCCATTGAGAAAAGCATTCTTGACATCAAGTTGTCGAAGAGGCCATTTATTTGTGACTGCAATAGAAAGCACAACACGGACAGTGGTAGCTTTGACAACCGGACTGAAAGTGTCAGTGTAGTCAAGACCAGGAACCTGAGTATAACCTTTGGCAACAAGACGAGCCTTGAAACGCTCGACAGATCCATCAGGCAAATATTTAATACGAAACACCCATTTAGAGCCCACGATGTTGGTGTTAGCAGGGCGAGGAACCAAAGTCCAAGTATCATTTTGTTGTAATGCTTGAATTTCTTCATCCATGGCAGCCACCCAAGCAGGATTCTTAGCCGCAGATTTGAATCCTTTTGGCTCAGTGGATGCAAGAAGAGCAGAAAGAAGTCCAGATGAGCCCAAAATACCAAGATTTGCTGGATGACGAGTCTTGAATATACCAGCTTTGGCTCGTGTGATCATAGGATGAGTGCCCAAAGAAGAGAAATCAACAGGAGGTTCAATAGAGGTCGAATTAGAAGTCGAAGGTGGCAAAGTGGAACCTGCAAGAGAAGTATCAACCTGCACAGACTCATCTACAAGGTCAGAACAAATATCACACGGGGATGAACTGGATCGAGGAGTTTGCGGTGATGAAGTGGTAGGGGGGGATGAATCAATATGATGAAAATGTGGTTCTAAGAAATTTGAAATAGGAATAGAGGAAAGAGGTTGGGTCTGGGAGCTAGGGATAGCAGGAAAGTGGGTTTCATCAAATTGAGCATGACAGGTGATATATAGCTTAGTGGTGGCCGGATCAAGACAGCGAAACCCTTTATGAGCAGGACTATAACCCAAAAAAATACAAGGAATGCTGCGGGGAGAAAGCTTGTTAGGCATATAATCACGCAAATAAGGATAAACACGACAACCAAAGGGATGAAAATTGTCATAATGTGGAGTGTAGCCATAAAGGAGTTCAAAGGGTGACTTACCTCCAAGAAGTGGAGTAGGCAACCGGTTGATAATATAAGCTGCAGTGCTGAAGGCGTCAACCCAAAAACGAGAAGAAAGATGAGAGTGAAAGAGAAGGGCCAAGCCAGTCTCAGTCACATGACGATGTTTTCTCTCAGCACGACCATTTTGAGCAGGTGTATATGGACAAGAGAGTTGATGGTGGATGCCAGAATTACGTAAATGAGTTTTGAAACAAGTATTAGTAAATTCGGTACCACCATCACTTTGAAATACCTTGATACGAGAAGAATATTGATTTTCCACAAATTTTTGAAATTGAAGAAAAATATCAAAAAAATCAGATTTAAATTTTAAAGGGTAAAACCAAGTGAATCGAGAATAATCATCAATAAAAATAACATAATAAAGGAAACCCGAATTTGATTTGACGGGAGAAGGACCCCAAAGATCACAATGAATAAGATCTAACACATGAGACGACCTACGTTCATTGCGGGAATAAGGCAATCGATGACTTTTTGCAAGCTGACAGGTATTACATAATGATGGAGAAGGCAATAAAGACGTAAGAGAAAGATGACCTTTTCTATTTAAAAAAGAAATAACAGAATGATTCACATGACCTAGACGAGCATGCCATAAATCATATGAAGCACGTAAAGATTTGTTTCTAAGGGCTGAAATAAAAGCAGAGTTGCCGCGCTCCAGCACATATAGCCCTCCATCTCTTTTACCGGTTGCCACCACCCTTCCTGTTTGACGATTCTGGATAGTAATAAGATTATTAGTAAATGTAACGGAGAGAGGAAAATCAGACGTTAATTTACTTATGGAAAGAAGATTTTTAGTGAGGTGAGGGACAACCAAGACATCTAACAAGTGAATATTTGGAACAGGTGAAAGAGTACCGGTGTGGGTAATGGGTAGGGAAGCACCGTTTCCTACAATCACAGAGTCCTTACCCGTGTAATTTTTAGACTGATCCAAAATAGATGGGTCGGCAGTCATATGGGCCGAAGCTCCAGTGTCCAGAAACCAATCAGCAGTATCGGGTCCAGCAATAGAACATGACGTGTTAAAGGCTTCAGCAAGGTGAGCATGAGAAGAATCAGGTCGAACATACCGTTGGTTGCAGCGGTCAGCATAATGGCCCTCTTTGCGGCATATTTGGCAGTGAGGTGGTCGACGACCTTGACTTGAGTGGGTTCGTCCTCGATTAGAAGAGTTATTTTTGTGAGAATAAGAACGACCTCGCTGGTTGGTAAAGGAAGCAGGGTGGCTTCCATGGGTGCGACCACGATTAGTGACTGTGAATGCTGTAGGAGTGGAGTTAGAGGACTCAAGGGAGAGCTGAAACAACTCAAAACTTTCAGCTTTAGAGACTAAATCTGCAAAACAGGGGATAGAGGTAAGAGCCATCTGAGCAGTAGAAAAAGCTGAAAATTCGGTGCCGAGTCCACGAAGGAACCAGTGCACTTTATCAATGTCCTCGACCGGTCTGCCAATGGCATGAAGTTGGTCACAAATTTTTTTGAAGGCACGGGCATACTCAGCAACAGGTTTGGTGCCACGTTTCATCAACTGCAAGTCATCCTTGAGTCTCAGTTCACGAGCTTTCGACTGATGGCTGAACGTAGTTTCCAACGCAAGCCAAACATCACGTGCAGTAGGGAGACCAACGACAACAGCCATGGCTTCCTCAGTGAGAGAGGAGAGCAGGAGACAGAGAAGTCGTTGATCGGCTGCTCTCCATGCCAAATATTTGGGGTTGAGTGTTGAAGAGGTTTCTGGTTCAAAGCGAGGTGGTGGAACCCTGGTTCCATCGACATAGCCCAGCATGTCTTGACTCTCAAGAAGAGGGAGAAGTTGGCTTTTCCAAAGAAGATAATTGGAGGAAGAAAGTTTGATGGTGATCATATGGATTAGAGTATTGAAAGGAAGAAGATGATAAGAAGATTCGGAAGCCATAGAGAAGAAAGGATCAGGGTTGTTAAACCGAAAGGGCTCTGATACCATGTGAATGTTTGCTGAATCACCACACCTCAATGGGGGTGAGAGTTCTCTTATTTATAATTATTTTCAGAATACAGAAATATGGTAAATTACAAATATTATGGAAATAGTAATAAAAGGAAAGAATAATAAATGAATGCAATATATTTGCCTTTAATAAGAGGGCAAATATGGTAACCCGTAATGTAAGGCAAATATCTAGATATTTGCCTTATAGTGACGGTCAACTATCCTTAACACCCCCAACACATGTTACTTCAGATTTAAGGATACACAGGATATTTTATACCTTAGCTGTAGATTTTGTTGTTTAACCAAAATTCCACACGCTTCCTCGTCCCTCACTCACAACCTCCCAAAGCTGAGCACACACTGCAAAGCTGGAGGTTGGAGTTATGTATATATCCATCATCACAACAAGGAAACCAAAAGTAAATTGAATGGAGGCGGTGGGATTGGTATGAAATATCCACAATGGTGTGGTTGCTTTGCACCCCGTCCCCACGACTCCAATAGATATTTCCTTCCAAAATTGACAATTACTTTTCACACGTTTTTTTCGTGCCTTCACTTCTCTTCTCTCTCTCTCTCATTCTAACATTTAACAACGTATCAAATACAAAATACAAACCACAAATCACATCAACTCCATTCATTCCTCTCTCTCTCTCTTACTCCCTTCATAAATTAAATATCCACGAATTGTTTTATAGAATAAAAAACAGCATTGAGCTTGGTATAATATGTTACTTACCAGGTTCATCTCCTTTGTTTCATGGTGTTTTTAAAATCATTTATATATATATATTGATGAGTATATTTCAGAATTTTAGGATGTAATTGCAATTCATCCTAAAAACGGAGGGTATCAATGTAATTTAACCTACTGTTTTATTTCTTGGTGATTGAATTTCGATTATACAGGTGGTACAAAAAAATATCTTGTAAATAGGGACAAAGACGTCCGATAGTGCCCATTCCGGAGAAAAGAAGATATTGCGAAACTCTCGAACAATTATTTTAAGCGTATTCCTTTGATTGGCCGGAATTCAGATATTTATACAAACGTCTTAATACATTTTTGGAAGTTTATAGTATATGTCACAACTTTCACTGCTCCTCTCTACACTTTTTGTTCGTTTTTATTTGGTAAACTTTTTCTTTTTTCTTTTTTTCTTTTTTATAGAAAATTTATAGGAGATATTTTTTTTTTTAAATATTTCGTAACTATTCTATTCATCTCTCATTTATTTAAATGGATTTTTTTTCAATAATATAAATGAGATGTTTATCACTCACATGGTAATTATACAGACAAATAATGTTGATTTGTTAAAGCATGCGTAA

mRNA sequence

ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCACTGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAGGGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACAGGGAGTTCCATACAGCGTTTCCAAATTTTAGGATGTGGTACAAAAAAATATCTTACAAATAATGTTGATTTGTTAAAGCATGCGTAA

Coding sequence (CDS)

ATGAAGACGTACCTCGTGGTCTTAAAAGTTGGGCACTCTTTTGCGAAGGATGGTCTCATCTTATGGGACGCCGTGTTGGAATGGATGACCAATTACGAGTGCCACTGTTACGCGGATGAGAGAGCGATGAAGAACGACCCGTATTGGAAGGTCCAGCATGGCGAGGGAGGACTATACGATGCTTCAAGCCTTCCCTTCAAGATCTCACAGGGGGAGAAGATGGCACCACAAATATTAAATAGGGCCTTCAAAGCGTTTAAACAGAAAGTGGAGCATTTACACAAAACCAACTTCAAACTATGGGATTACAGGACAGGGAGTTCCATACAGCGTTTCCAAATTTTAGGATGTGGTACAAAAAAATATCTTACAAATAATGTTGATTTGTTAAAGCATGCGTAA

Homology

[Close]

BLAST of CmoCh20G000650 vs. TAIR10
Match: AT3G45140.1 (AT3G45140.1 lipoxygenase 2)

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 1


Query: 12  HSFAKDGLILWDAVLEWMTNYECHCYADERAMKND 47
           + FA DGLILWDA+ EW+T+Y  H Y DE  + +D
Sbjct: 664 YPFANDGLILWDAIKEWVTDYVKHYYPDEELITSD 698

The following BLAST results are available for this feature:

BLAST of CmoCh20G000650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000650 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000650 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45140.1	2.1e-06	54.29	lipoxygenase 2	[more]

BLAST of CmoCh20G000650 vs. NCBI nr


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013819	LipOase_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G000650.1	CmoCh20G000650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 13..47 score: 3.
IPR013819	Lipoxygenase, C-terminal	unknown	SSF48484	Lipoxigenase	coord: 12..64 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G000650	Wax gourd	cmowgoB0687
CmoCh20G000650	Wax gourd	cmowgoB0699
CmoCh20G000650	Cucurbita moschata (Rifu)	cmocmoB115
CmoCh20G000650	Cucurbita moschata (Rifu)	cmocmoB302
CmoCh20G000650	Cucurbita moschata (Rifu)	cmocmoB405
CmoCh20G000650	Cucumber (Gy14) v1	cgycmoB0096
CmoCh20G000650	Cucumber (Gy14) v1	cgycmoB0398
CmoCh20G000650	Cucurbita maxima (Rimu)	cmacmoB358
CmoCh20G000650	Cucurbita maxima (Rimu)	cmacmoB550
CmoCh20G000650	Cucurbita maxima (Rimu)	cmacmoB607
CmoCh20G000650	Cucurbita maxima (Rimu)	cmacmoB908
CmoCh20G000650	Wild cucumber (PI 183967)	cmocpiB534
CmoCh20G000650	Wild cucumber (PI 183967)	cmocpiB543
CmoCh20G000650	Wild cucumber (PI 183967)	cmocpiB569
CmoCh20G000650	Cucumber (Chinese Long) v2	cmocuB538
CmoCh20G000650	Cucumber (Chinese Long) v2	cmocuB564
CmoCh20G000650	Melon (DHL92) v3.5.1	cmomeB506
CmoCh20G000650	Melon (DHL92) v3.5.1	cmomeB509
CmoCh20G000650	Watermelon (Charleston Gray)	cmowcgB490
CmoCh20G000650	Watermelon (97103) v1	cmowmB506
CmoCh20G000650	Watermelon (97103) v1	cmowmB520
CmoCh20G000650	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G000650	Cucurbita pepo (Zucchini)	cmocpeB518
CmoCh20G000650	Cucurbita pepo (Zucchini)	cmocpeB526
CmoCh20G000650	Cucurbita pepo (Zucchini)	cmocpeB535
CmoCh20G000650	Bottle gourd (USVL1VR-Ls)	cmolsiB484
CmoCh20G000650	Cucumber (Gy14) v2	cgybcmoB493
CmoCh20G000650	Melon (DHL92) v3.6.1	cmomedB582
CmoCh20G000650	Melon (DHL92) v3.6.1	cmomedB585
CmoCh20G000650	Silver-seed gourd	carcmoB0709
CmoCh20G000650	Silver-seed gourd	carcmoB1236
CmoCh20G000650	Cucumber (Chinese Long) v3	cmocucB0632
CmoCh20G000650	Cucumber (Chinese Long) v3	cmocucB0645
CmoCh20G000650	Cucumber (Chinese Long) v3	cmocucB0673
CmoCh20G000650	Watermelon (97103) v2	cmowmbB557