CmoCh20G000270.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G000270.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr20 : 195938 .. 196794 (+)
Sequence length	779

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATACCTCTCCTAACCTCACGTATATCAACTCCAAGAGAAGACTACTTATATAATTAGGGATATTTGAGTAAACTCTTCATCGATAAAGTGATACCGAAGCAGTAAAATTCAGTGTCTAGTTCAACCATGCGTGAGGGTTTTTTTAATTAATTGAAGGTGAGATTTCTAACATTTGATCTTTTGGATTAGATCATAACGCTTTAATTATTGAACTATGTTTCGATCAACAACATTCAACACGACGGGCTCATTGATCCAGCTCTAATGGTCTAAAATACCTTCCATCTATGAGGTAAGTCCCAACTTTAAGCCGCACGCCCCACACGTCCTTCGGTTTTCTTGACACGATTCTGTTCAATTACGCACGCAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGAGACCGAGTGCTTAAGCTGTTGGAGACGTTGAAGGAAGAGATGGAACTGACGATGCCGATGCCGATGCTTGGGCGTGGAATTGCTGTAGCAGAAGAAAGAGAAGTGGCCATTGGAACCGTATCTTATCACCAACGTTTCAATTCGAGGATATGTTTGGGAGTGGATATTGAGGTTAAAGCTTTTGTTTTGTCTTTTTTTTAAGCTCGAG

mRNA sequence

CCATACCTCTCCTAACCTCACGTATATCAACTCCAAGAGAAGACTACTTATATAATTAGGGATATTTGAGTAAACTCTTCATCGATAAAGTGATACCGAAGCAGTAAAATTCAGTGTCTAGTTCAACCATGCGTGAGGGTTTTTTTAATTAATTGAAGGTGAGATTTCTAACATTTGATCTTTTGGATTAGATCATAACGCTTTAATTATTGAACTATGTTTCGATCAACAACATTCAACACGACGGGCTCATTGATCCAGCTCTAATGGTCTAAAATACCTTCCATCTATGAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGAGACCGAGTGCTTAAGCTGTTGGAGACGTTGAAGGAAGAGATGGAACTGACGATGCCGATGCCGATGCTTGGGCGTGGAATTGCTGTAGCAGAAGAAAGAGAAGTGGCCATTGGAACCGTATCTTATCACCAACGTTTCAATTCGAGGATATGTTTGGGAGTGGATATTGAGGTTAAAGCTTTTGTTTTGTCTTTTTTTTAAGCTCGAG

Coding sequence (CDS)

ATGAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGA

Homology

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BLAST of CmoCh20G000270.1 vs. TrEMBL
Match: M4CQU4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 31 LPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFTR 90
          LPTSPGL  PEL LR G EAAVFI LGAST + G+P  S     GG    + A+  H T 
Sbjct: 9  LPTSPGLTKPELALRQGIEAAVFITLGASTMMIGDPTWSLDFGLGG----SFAVSQHLTV 67

Query: 91 LRG 94
           RG
Sbjct: 69 TRG 67

The following BLAST results are available for this feature:

BLAST of CmoCh20G000270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
M4CQU4_BRARP	2.9e-06	53.97	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of CmoCh20G000270.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh20G000270.1 vs. NCBI nr


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh20G000270	CmoCh20G000270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000270.1	CmoCh20G000270.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000270.1.exon.2	CmoCh20G000270.1.exon.2	exon
CmoCh20G000270.1.exon.1	CmoCh20G000270.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000270.1.five_prime_UTR.1	CmoCh20G000270.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000270.1.CDS.1	CmoCh20G000270.1.CDS.1	CDS
CmoCh20G000270.1.CDS.2	CmoCh20G000270.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh20G000270.1.three_prime_UTR.1	CmoCh20G000270.1.three_prime_UTR.1	three_prime_UTR