CmoCh20G000270 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G000270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr20 : 195938 .. 196794 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATACCTCTCCTAACCTCACGTATATCAACTCCAAGAGAAGACTACTTATATAATTAGGGATATTTGAGTAAACTCTTCATCGATAAAGTGATACCGAAGCAGTAAAATTCAGTGTCTAGTTCAACCATGCGTGAGGGTTTTTTTAATTAATTGAAGGTGAGATTTCTAACATTTGATCTTTTGGATTAGATCATAACGCTTTAATTATTGAACTATGTTTCGATCAACAACATTCAACACGACGGGCTCATTGATCCAGCTCTAATGGTCTAAAATACCTTCCATCTATGAGGTAAGTCCCAACTTTAAGCCGCACGCCCCACACGTCCTTCGGTTTTCTTGACACGATTCTGTTCAATTACGCACGCAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGAGACCGAGTGCTTAAGCTGTTGGAGACGTTGAAGGAAGAGATGGAACTGACGATGCCGATGCCGATGCTTGGGCGTGGAATTGCTGTAGCAGAAGAAAGAGAAGTGGCCATTGGAACCGTATCTTATCACCAACGTTTCAATTCGAGGATATGTTTGGGAGTGGATATTGAGGTTAAAGCTTTTGTTTTGTCTTTTTTTTAAGCTCGAG

mRNA sequence

CCATACCTCTCCTAACCTCACGTATATCAACTCCAAGAGAAGACTACTTATATAATTAGGGATATTTGAGTAAACTCTTCATCGATAAAGTGATACCGAAGCAGTAAAATTCAGTGTCTAGTTCAACCATGCGTGAGGGTTTTTTTAATTAATTGAAGGTGAGATTTCTAACATTTGATCTTTTGGATTAGATCATAACGCTTTAATTATTGAACTATGTTTCGATCAACAACATTCAACACGACGGGCTCATTGATCCAGCTCTAATGGTCTAAAATACCTTCCATCTATGAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGAGACCGAGTGCTTAAGCTGTTGGAGACGTTGAAGGAAGAGATGGAACTGACGATGCCGATGCCGATGCTTGGGCGTGGAATTGCTGTAGCAGAAGAAAGAGAAGTGGCCATTGGAACCGTATCTTATCACCAACGTTTCAATTCGAGGATATGTTTGGGAGTGGATATTGAGGTTAAAGCTTTTGTTTTGTCTTTTTTTTAAGCTCGAG

Coding sequence (CDS)

ATGAGCAGGCAGGCATTAGTTACAAGCGTTGCACATAAGGTGTTCGAAGCAATGCCAAAGACAGAGGACGAAGATCGATCGACCGCTCACCTGCCAACGTCGCCGGGGTTGATTATGCCGGAATTGACCCTGAGGCATGGAACCGAGGCTGCGGTCTTTATCATTTTGGGAGCCTCGACTACGATAACGGGGGAGCCGATCTCGAGTTTCCAACTCTTTGCCGGCGGCGTGGGGTCTGCTGCCGATGCACTTGATTCGCACTTCACGAGGCTTCGCGGTTGA
Homology
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BLAST of CmoCh20G000270 vs. TrEMBL
Match: M4CQU4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 1 

Query: 31 LPTSPGLIMPELTLRHGTEAAVFIILGASTTITGEPISSFQLFAGGVGSAADALDSHFTR 90
          LPTSPGL  PEL LR G EAAVFI LGAST + G+P  S     GG    + A+  H T 
Sbjct: 9  LPTSPGLTKPELALRQGIEAAVFITLGASTMMIGDPTWSLDFGLGG----SFAVSQHLTV 67

Query: 91 LRG 94
           RG
Sbjct: 69 TRG 67

The following BLAST results are available for this feature:
BLAST of CmoCh20G000270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh20G000270 vs. TrEMBL
Match NameE-valueIdentityDescription
M4CQU4_BRARP2.9e-0653.97Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of CmoCh20G000270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh20G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G000270.1CmoCh20G000270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G000270Melon (DHL92) v3.6.1cmomedB585
CmoCh20G000270Silver-seed gourdcarcmoB0709
CmoCh20G000270Silver-seed gourdcarcmoB1236
CmoCh20G000270Cucumber (Chinese Long) v3cmocucB0632
CmoCh20G000270Cucumber (Chinese Long) v3cmocucB0645
CmoCh20G000270Watermelon (97103) v2cmowmbB557
CmoCh20G000270Wax gourdcmowgoB0687
CmoCh20G000270Cucurbita moschata (Rifu)cmocmoB405
CmoCh20G000270Cucumber (Gy14) v1cgycmoB0398
CmoCh20G000270Cucumber (Gy14) v1cgycmoB0423
CmoCh20G000270Cucurbita maxima (Rimu)cmacmoB550
CmoCh20G000270Cucurbita maxima (Rimu)cmacmoB607
CmoCh20G000270Wild cucumber (PI 183967)cmocpiB534
CmoCh20G000270Wild cucumber (PI 183967)cmocpiB543
CmoCh20G000270Cucumber (Chinese Long) v2cmocuB538
CmoCh20G000270Melon (DHL92) v3.5.1cmomeB509
CmoCh20G000270Watermelon (Charleston Gray)cmowcgB490
CmoCh20G000270Watermelon (97103) v1cmowmB520
CmoCh20G000270Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G000270Cucurbita pepo (Zucchini)cmocpeB535
CmoCh20G000270Bottle gourd (USVL1VR-Ls)cmolsiB484
CmoCh20G000270Cucumber (Gy14) v2cgybcmoB493