CmoCh20G000220.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATCAGAACGTCCTCCTCCGATCCCCGCCAGAGACTCGCCAGCAACCACTACTGACAGACAAGTCGCCCAACAGACTTAAGGAAAAGCCGCGGTTCGCGGAGGTGGCCGGCGGAACGGCCGCGGAGTGCGCGGCAATATGCTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACCGTCTACAAGGTTCCAGTGGGGCTCTGCAAAAAGGCGTGGAATAAGAGGGGAAAACGACGTCACATCACGAAGAGAAACAAGGCGGCGGCGGGCGGTGCAACTGTAGGTAAGGAGGGGCCGAAACATGATGGTGAAAAGGAGGATTGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATGTGGAATTGGAGAAGGAGATGTGGGACCAATTTTATGGTACTGGCTTCTGGAGGACACCTTCTCAGAGAGAAACCTAA ATGAATCAGAACGTCCTCCTCCGATCCCCGCCAGAGACTCGCCAGCAACCACTACTGACAGACAAGTCGCCCAACAGACTTAAGGAAAAGCCGCGGTTCGCGGAGGTGGCCGGCGGAACGGCCGCGGAGTGCGCGGCAATATGCTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACCGTCTACAAGGTTCCAGTGGGGCTCTGCAAAAAGGCGTGGAATAAGAGGGGAAAACGACGTCACATCACGAAGAGAAACAAGGCGGCGGCGGGCGGTGCAACTGTAGGTAAGGAGGGGCCGAAACATGATGGTGAAAAGGAGGATTGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATGTGGAATTGGAGAAGGAGATGTGGGACCAATTTTATGGTACTGGCTTCTGGAGGACACCTTCTCAGAGAGAAACCTAA ATGAATCAGAACGTCCTCCTCCGATCCCCGCCAGAGACTCGCCAGCAACCACTACTGACAGACAAGTCGCCCAACAGACTTAAGGAAAAGCCGCGGTTCGCGGAGGTGGCCGGCGGAACGGCCGCGGAGTGCGCGGCAATATGCTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACCGTCTACAAGGTTCCAGTGGGGCTCTGCAAAAAGGCGTGGAATAAGAGGGGAAAACGACGTCACATCACGAAGAGAAACAAGGCGGCGGCGGGCGGTGCAACTGTAGGTAAGGAGGGGCCGAAACATGATGGTGAAAAGGAGGATTGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATGTGGAATTGGAGAAGGAGATGTGGGACCAATTTTATGGTACTGGCTTCTGGAGGACACCTTCTCAGAGAGAAACCTAA
BLAST of CmoCh20G000220.1 vs. TrEMBL
Match: A0A0A0L1Q3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G279850 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 4.5e-62 Identity = 122/149 (81.88%), Postives = 128/149 (85.91%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. TrEMBL
Match: A0A061GTT8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041188 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 7.0e-31 Identity = 74/154 (48.05%), Postives = 102/154 (66.23%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. TrEMBL
Match: W9QVY0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017152 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27 Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. TrEMBL
Match: A0A067EDE1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031729mg PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.4e-26 Identity = 74/151 (49.01%), Postives = 92/151 (60.93%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. TrEMBL
Match: V4UDA8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029482mg PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.4e-26 Identity = 71/149 (47.65%), Postives = 90/149 (60.40%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. TAIR10
Match: AT2G27180.1 (AT2G27180.1 unknown protein) HSP 1 Score: 113.6 bits (283), Expect = 1.0e-25 Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. TAIR10
Match: AT3G11690.1 (AT3G11690.1 unknown protein) HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18 Identity = 62/174 (35.63%), Postives = 86/174 (49.43%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. TAIR10
Match: AT5G06380.1 (AT5G06380.1 unknown protein) HSP 1 Score: 87.0 bits (214), Expect = 1.0e-17 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. NCBI nr
Match: gi|449449000|ref|XP_004142253.1| (PREDICTED: uncharacterized protein LOC101219884 [Cucumis sativus]) HSP 1 Score: 245.4 bits (625), Expect = 6.5e-62 Identity = 122/149 (81.88%), Postives = 128/149 (85.91%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. NCBI nr
Match: gi|659097839|ref|XP_008449841.1| (PREDICTED: uncharacterized protein LOC103491601 [Cucumis melo]) HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59 Identity = 121/149 (81.21%), Postives = 126/149 (84.56%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. NCBI nr
Match: gi|590586119|ref|XP_007015616.1| (Uncharacterized protein TCM_041188 [Theobroma cacao]) HSP 1 Score: 141.7 bits (356), Expect = 1.0e-30 Identity = 74/154 (48.05%), Postives = 102/154 (66.23%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. NCBI nr
Match: gi|703077180|ref|XP_010090525.1| (hypothetical protein L484_017152 [Morus notabilis]) HSP 1 Score: 129.4 bits (324), Expect = 5.2e-27 Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 1
BLAST of CmoCh20G000220.1 vs. NCBI nr
Match: gi|567862790|ref|XP_006424049.1| (hypothetical protein CICLE_v10029482mg [Citrus clementina]) HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26 Identity = 71/149 (47.65%), Postives = 90/149 (60.40%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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