CmoCh20G000090.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCCAAGTAAGAATTGCATGTTCACTTCTTCTGCTGAGTAAATGTACACAACTTGATTATTTTAGAACTTCTGTTGAGTAAATTTACGCAACTTGACTATCTTAGGACTTCTCCTGTTCAGTTGCTTTATGCTGATAATAAATTCTCAATTTCTTTTCTTTTATTGCTATCCATGCTCCAAGTAGGCTTATCACAAACTACTCCCAACATTTCTACAGGACTCAATGGATACTTGATTGTGGTCTCTCATTCTCAATAAGTTGTGTACGGTTTTGACAGGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTGGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTTTGGTGGAGAGGCAAGTTTGTGAGCCAATATTCCCTCCCCCATTGTAGTACTTGTAATTCTTACTTGAATTTTCTTTCTTATATTCCAACTATTATAGCACTAAGTTAATTTTATATATACAGGTCGGATATGGAACTCTTGGGTCCAAGTAATCAACATCTTCCCAAAATAGTTGCAGTTTTTGCCGAGGTCAGTTGGGAATTAGTATTTAATCGATTGATCATACTTAACAGTAACAAGCCTGGAAGAGAACATAAAAATGGGAGGTAGGATAACGACAATTGCTTCTAACCATTAAACTGGGTGCTCTCAATCTCTTGAGTAGTTATTGAATCTAGGGTAGTGTTTGCTGGCCATATTTTAGAATGAGCCATTTATGACCCAATTCAGTGAGTGGGTGGAAATGATTTTCATGATGAGAACTACTGTAAGTTGCTCCCTTTGATTGACTGTATTCTGTATTCTTTATTGCATTATGATTTTGTTACATAGAGCGAATGGATTTAATATTCAGAGCAATTTGAGAAATGTGATCGGACAATTGATTGTGCTGAATAGAACCAAACACATGCTAATGTGGTTGCTTTCAATGTTTTTCTTTAATCCTGCCCAAAAGATGGTTTGAGACCTTCAACATTAATTGTGTGCAAAGTCGTTGATCGTTGCCTATATCTGTTTTGTATAAGCAGCGAGATGCTACTTGGTGCATGTTTAGATAACCTGGGTCAATGCTTCGTGCATCGTTCTTTTTCCTCGAGGGGAGTATTTACTTGTGCAGGTTCTATGTGCGGGAAAGGATGTAGCAACAGAGAAGAGTGCTAGCCGAATGACTAGTTTGTTGAGACAGATGCAACCGAGTTTACCGCCTTCCACTTTAGCCTCAACTTGGTCCTACTTGCAACCCCAGCACCAACTTGCTTTGCAGTCTATCCTCCCATAGTCTCTCAAAGGTGACTCTGGATCCTGCCGCTGCCCCCGGGCGGCACACTTTTCTGTTCTTGTTTATGTTTGAATTATATTCGTCCCCATTCTTTGCCAAAAAATGCTCTCAAGCATGAGTTTTGTTTGGTCCCTTGCAGAGAGATGCTGTCATTTGATGATAGTGAAAATCATCGTTGCTTCGTGTTAAATAAAATGTGTATATTTCATCGTTTAATTCTAAGTACGTGGGTTTGTTACGATTTTTTTCTAGTTTCGGGGAGATAGGTCGCCTCGGAGGCAATCTTTTACAGTTCTGTTTTGGTCCAATTAACTAGTATCATTGTCGTTATAAATTTTCATTGCAGTTTCAGAATATATCAAATGAATTTCGTGATTGTGTTTCCTTGATTTGTTTTGAATTCTATTTCCAATTAGCAAAGAAACTTGACGTCTTTTACCTGGTCTCCCTCTTCTCTGTCTGTATTACAGAATTTTCGAAGCCAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAGAACATTTCACTCAAATTTATTTAAGGCTTGCTTAGAGAGTGGAAAAAAAGTAACACAGGGATGCCTGGACTTGTCGTAGTCTTAGTAGATATTGCTTTGGGGCAAATAAAACAAGTGGACTCAAGGTCAGACAATGCACGTTCAGACAACTTTGCGATTAAACTTTCATTCTTAACGTCGTGCTTCCACGAGTTTGTTGTGTTTGTTTGTTTGATTTTTCCAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACGTCGGTAACTCCTTCCATTAGCTGTTAATCATCCCATCAAATTCCTCCCTTTACTGCCGTCATGACTCATTATTCTCCATTTGGGTTTCCATTATACAGACGAAAAGGGCACTACATTTATAAGCCCAATAATTAAATAAAATCAACGGACATGCTGACAAGAAGACAAAGACGAGGACACCACTAACAGCTAACAGCCTAAAGCCCTCATGCCTCATGCCGCCATTATAAAACCAATGCCCA ATGCCCCAAGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTGGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTTTGGTGGAGAGGTCGGATATGGAACTCTTGGGTCCAAGTAATCAACATCTTCCCAAAATAGTTGCAGTTTTTGCCGAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACACGAAAAGGGCACTACATTTATAAGCCCAATAATTAAATAAAATCAACGGACATGCTGACAAGAAGACAAAGACGAGGACACCACTAACAGCTAACAGCCTAAAGCCCTCATGCCTCATGCCGCCATTATAAAACCAATGCCCA ATGCCCCAAGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTGGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTTTGGTGGAGAGGTCGGATATGGAACTCTTGGGTCCAAGTAATCAACATCTTCCCAAAATAGTTGCAGTTTTTGCCGAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACACGAAAAGGGCACTACATTTATAAGCCCAATAATTAA
BLAST of CmoCh20G000090.1 vs. TrEMBL
Match: A0A0A0L0C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268110 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16 Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. TrEMBL
Match: W9SBF2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019091 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 5.4e-16 Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. TrEMBL
Match: M5WH98_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000523mg PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16 Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. TrEMBL
Match: A0A0V0IZ18_SOLCH (Putative importin-5-like (Fragment) OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16 Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. TrEMBL
Match: A0A0V0IYL2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16 Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. TAIR10
Match: AT5G19820.1 (AT5G19820.1 ARM repeat superfamily protein) HSP 1 Score: 82.4 bits (202), Expect = 1.6e-16 Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. NCBI nr
Match: gi|778692779|ref|XP_004149646.2| (PREDICTED: importin-5 [Cucumis sativus]) HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16 Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. NCBI nr
Match: gi|659097925|ref|XP_008449884.1| (PREDICTED: importin-5 [Cucumis melo]) HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16 Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. NCBI nr
Match: gi|703160853|ref|XP_010112639.1| (hypothetical protein L484_019091 [Morus notabilis]) HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16 Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. NCBI nr
Match: gi|743791185|ref|XP_010923358.1| (PREDICTED: importin-5-like [Elaeis guineensis]) HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16 Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
BLAST of CmoCh20G000090.1 vs. NCBI nr
Match: gi|657984580|ref|XP_008384384.1| (PREDICTED: importin-5-like [Malus domestica]) HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16 Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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