CmoCh20G000090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G000090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRan-binding protein 6
LocationCmo_Chr20 : 111157 .. 113526 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCAAGTAAGAATTGCATGTTCACTTCTTCTGCTGAGTAAATGTACACAACTTGATTATTTTAGAACTTCTGTTGAGTAAATTTACGCAACTTGACTATCTTAGGACTTCTCCTGTTCAGTTGCTTTATGCTGATAATAAATTCTCAATTTCTTTTCTTTTATTGCTATCCATGCTCCAAGTAGGCTTATCACAAACTACTCCCAACATTTCTACAGGACTCAATGGATACTTGATTGTGGTCTCTCATTCTCAATAAGTTGTGTACGGTTTTGACAGGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTGGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTTTGGTGGAGAGGCAAGTTTGTGAGCCAATATTCCCTCCCCCATTGTAGTACTTGTAATTCTTACTTGAATTTTCTTTCTTATATTCCAACTATTATAGCACTAAGTTAATTTTATATATACAGGTCGGATATGGAACTCTTGGGTCCAAGTAATCAACATCTTCCCAAAATAGTTGCAGTTTTTGCCGAGGTCAGTTGGGAATTAGTATTTAATCGATTGATCATACTTAACAGTAACAAGCCTGGAAGAGAACATAAAAATGGGAGGTAGGATAACGACAATTGCTTCTAACCATTAAACTGGGTGCTCTCAATCTCTTGAGTAGTTATTGAATCTAGGGTAGTGTTTGCTGGCCATATTTTAGAATGAGCCATTTATGACCCAATTCAGTGAGTGGGTGGAAATGATTTTCATGATGAGAACTACTGTAAGTTGCTCCCTTTGATTGACTGTATTCTGTATTCTTTATTGCATTATGATTTTGTTACATAGAGCGAATGGATTTAATATTCAGAGCAATTTGAGAAATGTGATCGGACAATTGATTGTGCTGAATAGAACCAAACACATGCTAATGTGGTTGCTTTCAATGTTTTTCTTTAATCCTGCCCAAAAGATGGTTTGAGACCTTCAACATTAATTGTGTGCAAAGTCGTTGATCGTTGCCTATATCTGTTTTGTATAAGCAGCGAGATGCTACTTGGTGCATGTTTAGATAACCTGGGTCAATGCTTCGTGCATCGTTCTTTTTCCTCGAGGGGAGTATTTACTTGTGCAGGTTCTATGTGCGGGAAAGGATGTAGCAACAGAGAAGAGTGCTAGCCGAATGACTAGTTTGTTGAGACAGATGCAACCGAGTTTACCGCCTTCCACTTTAGCCTCAACTTGGTCCTACTTGCAACCCCAGCACCAACTTGCTTTGCAGTCTATCCTCCCATAGTCTCTCAAAGGTGACTCTGGATCCTGCCGCTGCCCCCGGGCGGCACACTTTTCTGTTCTTGTTTATGTTTGAATTATATTCGTCCCCATTCTTTGCCAAAAAATGCTCTCAAGCATGAGTTTTGTTTGGTCCCTTGCAGAGAGATGCTGTCATTTGATGATAGTGAAAATCATCGTTGCTTCGTGTTAAATAAAATGTGTATATTTCATCGTTTAATTCTAAGTACGTGGGTTTGTTACGATTTTTTTCTAGTTTCGGGGAGATAGGTCGCCTCGGAGGCAATCTTTTACAGTTCTGTTTTGGTCCAATTAACTAGTATCATTGTCGTTATAAATTTTCATTGCAGTTTCAGAATATATCAAATGAATTTCGTGATTGTGTTTCCTTGATTTGTTTTGAATTCTATTTCCAATTAGCAAAGAAACTTGACGTCTTTTACCTGGTCTCCCTCTTCTCTGTCTGTATTACAGAATTTTCGAAGCCAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAGAACATTTCACTCAAATTTATTTAAGGCTTGCTTAGAGAGTGGAAAAAAAGTAACACAGGGATGCCTGGACTTGTCGTAGTCTTAGTAGATATTGCTTTGGGGCAAATAAAACAAGTGGACTCAAGGTCAGACAATGCACGTTCAGACAACTTTGCGATTAAACTTTCATTCTTAACGTCGTGCTTCCACGAGTTTGTTGTGTTTGTTTGTTTGATTTTTCCAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACGTCGGTAACTCCTTCCATTAGCTGTTAATCATCCCATCAAATTCCTCCCTTTACTGCCGTCATGACTCATTATTCTCCATTTGGGTTTCCATTATACAGACGAAAAGGGCACTACATTTATAAGCCCAATAATTAAATAAAATCAACGGACATGCTGACAAGAAGACAAAGACGAGGACACCACTAACAGCTAACAGCCTAAAGCCCTCATGCCTCATGCCGCCATTATAAAACCAATGCCCA

mRNA sequence

ATGCCCCAAGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTGGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTTTGGTGGAGAGGTCGGATATGGAACTCTTGGGTCCAAGTAATCAACATCTTCCCAAAATAGTTGCAGTTTTTGCCGAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACACGAAAAGGGCACTACATTTATAAGCCCAATAATTAAATAAAATCAACGGACATGCTGACAAGAAGACAAAGACGAGGACACCACTAACAGCTAACAGCCTAAAGCCCTCATGCCTCATGCCGCCATTATAAAACCAATGCCCA

Coding sequence (CDS)

ATGCCCCAAGTTGTTCCACCATGGTTAAACTGCCTACCAATAAAAGGTGACTGGGTTGAACCAAAAATTGTGCTCGACCAACTTCGTTCTTTGGTGGAGAGGTCGGATATGGAACTCTTGGGTCCAAGTAATCAACATCTTCCCAAAATAGTTGCAGTTTTTGCCGAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACACGAAAAGGGCACTACATTTATAAGCCCAATAATTAA
Homology
[Close]
BLAST of CmoCh20G000090 vs. TrEMBL
Match: A0A0A0L0C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268110 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDS 62
            QVVP WLNCLPIKGD VE KIV DQL SLVERSD+ELLGP+NQ+LPKI AVFAE      
Sbjct: 1010 QVVPAWLNCLPIKGDLVEAKIVHDQLCSLVERSDVELLGPNNQYLPKIAAVFAEVLCAGK 1069

Query: 63   KLKLQTTHG 72
             L  + T G
Sbjct: 1070 DLATEQTAG 1078

[Close]
BLAST of CmoCh20G000090 vs. TrEMBL
Match: W9SBF2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019091 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.4e-16
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE 57
            QVVP WLNCLPIKGD +E K+V DQL S+VERSD ELLGP+NQ+LPKIVAVFAE
Sbjct: 1012 QVVPAWLNCLPIKGDLIEAKVVHDQLCSMVERSDRELLGPNNQYLPKIVAVFAE 1065

[Close]
BLAST of CmoCh20G000090 vs. TrEMBL
Match: M5WH98_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000523mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE 57
            QV+P WLNCLPIKGD +E K+V DQL S+VERSD ELLGP+NQ+LPKIVAVFAE
Sbjct: 1008 QVIPAWLNCLPIKGDLIEAKVVHDQLCSMVERSDRELLGPNNQYLPKIVAVFAE 1061

[Close]
BLAST of CmoCh20G000090 vs. TrEMBL
Match: A0A0V0IZ18_SOLCH (Putative importin-5-like (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 3   QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE 57
           QVVP WLNCLPIKGD +E K+V DQL S+VERSD+ELLGP+NQ+LPKIV+VFAE
Sbjct: 885 QVVPAWLNCLPIKGDLIEAKVVHDQLCSMVERSDVELLGPNNQYLPKIVSVFAE 938

[Close]
BLAST of CmoCh20G000090 vs. TrEMBL
Match: A0A0V0IYL2_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 3   QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE 57
           QVVP WLNCLPIKGD +E K+V DQL S+VERSD+ELLGP+NQ+LPKIV+VFAE
Sbjct: 681 QVVPAWLNCLPIKGDLIEAKVVHDQLCSMVERSDVELLGPNNQYLPKIVSVFAE 734

[Close]
BLAST of CmoCh20G000090 vs. TAIR10
Match: AT5G19820.1 (AT5G19820.1 ARM repeat superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-16
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE 57
            QV+P WLNCLPI  D +E K+V DQL S+VER D++LLGP+NQHLPKI+ VFAE
Sbjct: 1010 QVLPAWLNCLPISNDVLEAKVVHDQLCSMVERQDVDLLGPNNQHLPKILIVFAE 1063

[Close]
BLAST of CmoCh20G000090 vs. NCBI nr
Match: gi|778692779|ref|XP_004149646.2| (PREDICTED: importin-5 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDS 62
            QVVP WLNCLPIKGD VE KIV DQL SLVERSD+ELLGP+NQ+LPKI AVFAE      
Sbjct: 1010 QVVPAWLNCLPIKGDLVEAKIVHDQLCSLVERSDVELLGPNNQYLPKIAAVFAEVLCAGK 1069

Query: 63   KLKLQTTHG 72
             L  + T G
Sbjct: 1070 DLATEQTAG 1078

[Close]
BLAST of CmoCh20G000090 vs. NCBI nr
Match: gi|659097925|ref|XP_008449884.1| (PREDICTED: importin-5 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDS 62
            QVVP WLNCLPIKGD VE KIV DQL SLVERSD+ELLGP+NQ+LPKI AVFAE      
Sbjct: 1010 QVVPAWLNCLPIKGDLVEAKIVHDQLCSLVERSDVELLGPNNQYLPKIAAVFAEVLCAGK 1069

Query: 63   KLKLQTTHG 72
             L  + T G
Sbjct: 1070 DLATEQTAG 1078

[Close]
BLAST of CmoCh20G000090 vs. NCBI nr
Match: gi|703160853|ref|XP_010112639.1| (hypothetical protein L484_019091 [Morus notabilis])

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE 57
            QVVP WLNCLPIKGD +E K+V DQL S+VERSD ELLGP+NQ+LPKIVAVFAE
Sbjct: 1012 QVVPAWLNCLPIKGDLIEAKVVHDQLCSMVERSDRELLGPNNQYLPKIVAVFAE 1065

[Close]
BLAST of CmoCh20G000090 vs. NCBI nr
Match: gi|743791185|ref|XP_010923358.1| (PREDICTED: importin-5-like [Elaeis guineensis])

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAEGRRVDS 62
            QVVP WLNCLPIKGD +E K+V +QL S+VERSD ELLGP+NQHLPKI++VFAE      
Sbjct: 1017 QVVPAWLNCLPIKGDLIEAKVVHEQLCSMVERSDRELLGPNNQHLPKIISVFAEVLCAGR 1076

Query: 63   KLKLQTTHG 72
             L  + T G
Sbjct: 1077 DLATEQTAG 1085

[Close]
BLAST of CmoCh20G000090 vs. NCBI nr
Match: gi|657984580|ref|XP_008384384.1| (PREDICTED: importin-5-like [Malus domestica])

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-16
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 3    QVVPPWLNCLPIKGDWVEPKIVLDQLRSLVERSDMELLGPSNQHLPKIVAVFAE 57
            QV+P WLNCLPIKGD VE K+V DQL S+VERSD ELLGP+NQ+LPKIVAVFAE
Sbjct: 1008 QVIPAWLNCLPIKGDLVEAKVVHDQLCSMVERSDRELLGPNNQYLPKIVAVFAE 1061

The following BLAST results are available for this feature:
BLAST of CmoCh20G000090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh20G000090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0C1_CUCSA1.4e-1669.57Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268110 PE=4 SV=1[more]
W9SBF2_9ROSA5.4e-1679.63Uncharacterized protein OS=Morus notabilis GN=L484_019091 PE=4 SV=1[more]
M5WH98_PRUPE7.0e-1677.78Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000523mg PE=4 SV=1[more]
A0A0V0IZ18_SOLCH7.0e-1677.78Putative importin-5-like (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
A0A0V0IYL2_SOLCH7.0e-1677.78Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
BLAST of CmoCh20G000090 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G19820.11.6e-1668.52 ARM repeat superfamily protein[more]
BLAST of CmoCh20G000090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778692779|ref|XP_004149646.2|2.0e-1669.57PREDICTED: importin-5 [Cucumis sativus][more]
gi|659097925|ref|XP_008449884.1|2.0e-1669.57PREDICTED: importin-5 [Cucumis melo][more]
gi|703160853|ref|XP_010112639.1|7.7e-1679.63hypothetical protein L484_019091 [Morus notabilis][more]
gi|743791185|ref|XP_010923358.1|7.7e-1663.77PREDICTED: importin-5-like [Elaeis guineensis][more]
gi|657984580|ref|XP_008384384.1|7.7e-1679.63PREDICTED: importin-5-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005618 cell wall
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0008536 Ran GTPase binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G000090.1CmoCh20G000090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 1..64
score: 1.
NoneNo IPR availablePANTHERPTHR10527IMPORTIN BETAcoord: 3..56
score: 9.0
NoneNo IPR availablePANTHERPTHR10527:SF29SUBFAMILY NOT NAMEDcoord: 3..56
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G000090Cp4.1LG05g05540Cucurbita pepo (Zucchini)cmocpeB535
CmoCh20G000090MELO3C014721.2Melon (DHL92) v3.6.1cmomedB585
CmoCh20G000090CsaV3_4G017480Cucumber (Chinese Long) v3cmocucB0647
CmoCh20G000090Cla97C02G050590Watermelon (97103) v2cmowmbB557
CmoCh20G000090Bhi10G000392Wax gourdcmowgoB0687
CmoCh20G000090Carg06965Silver-seed gourdcarcmoB0709
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh20G000090CmoCh02G012030Cucurbita moschata (Rifu)cmocmoB405
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G000090Cucumber (Gy14) v1cgycmoB0423
CmoCh20G000090Cucurbita maxima (Rimu)cmacmoB550
CmoCh20G000090Cucurbita maxima (Rimu)cmacmoB607
CmoCh20G000090Wild cucumber (PI 183967)cmocpiB543
CmoCh20G000090Cucumber (Chinese Long) v2cmocuB538
CmoCh20G000090Melon (DHL92) v3.5.1cmomeB509
CmoCh20G000090Watermelon (Charleston Gray)cmowcgB490
CmoCh20G000090Watermelon (97103) v1cmowmB520
CmoCh20G000090Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G000090Bottle gourd (USVL1VR-Ls)cmolsiB484
CmoCh20G000090Cucumber (Gy14) v2cgybcmoB494