CmoCh19G006930.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G006930.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Dehydrin protein
Location	Cmo_Chr19 : 7319650 .. 7321257 (+)
Sequence length	906

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCAACGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCATTGCAACCAAGGTCGGCACGACACTCGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGGTGAGTCCAAGTTTTTGAATTATAATTAGCAGTTGGACTTTCGTATTCTCGCTCAGACTCTCGAGATTTTCATTCTGTTCTGGCGTCGCTTAATCATTTTCTCTACAAAGTACACTATAAGGCCTAACCTCTTTGAGGCCTATGGAGTCCTCGAATAGTCTCTCTTAATTGAGACTCGATACCTTTTTTGGAGTCCTTGAGCAAAGGGTCTTTATTCGACACTTGAGGATTCTATTGACATGATTAAATCAAAGGCATGACTTTGATATTAAGTTACAAACGACGACTCTCTACAATAGTATAATATTGTCTATTTTGAGCATAAGCTTTCAGGGCTTTACTTTGGATTTCTCTATGACCCTCGTACCAATGAACATACATTTTTTACCATTTATGATCATCTTTAATCGAAAGACGTGTCGATTTTATTTAATCCATTTTTTTTCTAAAGAAATGCAATTACAATTTTTAAAACAATATTAATAAAATAAAATTATGGTATTCAAAATGAACTTTTTGACGTATCCAACTTGGTACAGATGGTTCGATGCTGAACGAGCGCGTATTACGTTATTAATCAAATTGAGGAATTAAATGGGTTACAATTTAATTGTAATATCCATTATGTTAATCCTAATTTAAGTTTGTAATAAATTAGATAATTAAATATCATTCATAGGATTAATTTATTTCCATTTCCAGTCTGAGGAAGAAGAACAAAGTGAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGAATCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAACCTCAAGCTTCTTCCCCTCCGACCACCACCGCAACTACAACCGCCTCTCCGATCACCACAAACAAAATTCACTATGGGGAACCCGCTCATAATATTCTCTGAATTGCTTTTGGTTCGTGTACTTGAAGACCTGACTGTATTTTCAAAGATTTTGATTGTATTTTCAAAGATTTTGATTCGGTTTCAAAGTTGGTAGATCATATTTTAGTTCGTGGACTTTTCATCCATGAGGTAAATTGATATTTTTATTAAACCGAAAAAAAAAATGATAGAATATAAGAGAAAGTAATTTTTTATAAAACTGAGATTGGTTGTGAAATTTAAGGGTGTAGAAACTTATTCTATCCGTCTTAAAATATGAGGCAAAACAGATAATATCTACTAGTGGTGTGTTTGAATTATTACAAATGATATGTTTGAACCAGATATCGAGCGGTGTATCAGCGAGAATGCTGG

mRNA sequence

ATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCAACGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCATTGCAACCAAGGTCGGCACGACACTCGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGTCTGAGGAAGAAGAACAAAGTGAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGAATCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAACCTCAAGCTTCTTCCCCTCCGACCACCACCGCAACTACAACCGCCTCTCCGATCACCACAAACAAAATTCACTATGGGGAACCCGCTCATAATATTCTCTGAATTGCTTTTGGTTCGTGTACTTGAAGACCTGACTGTATTTTCAAAGATTTTGATTGTATTTTCAAAGATTTTGATTCGGTTTCAAAGTTGGTAGATCATATTTTAGTTCGTGGACTTTTCATCCATGAGGTAAATTGATATTTTTATTAAACCGAAAAAAAAAATGATAGAATATAAGAGAAAGTAATTTTTTATAAAACTGAGATTGGTTGTGAAATTTAAGGGTGTAGAAACTTATTCTATCCGTCTTAAAATATGAGGCAAAACAGATAATATCTACTAGTGGTGTGTTTGAATTATTACAAATGATATGTTTGAACCAGATATCGAGCGGTGTATCAGCGAGAATGCTGG

Coding sequence (CDS)

ATGGAAGGGATGAGAATGGCGAAAATGGCTGATATACAGGACGAGTATGGCAACCCCATCCAACTCAACGACGAGCATGGCAACCCGGTTGTGTTGACTGATGAACATGGCAACCCCGTGAGGCTCTCTGGCATTGCAACCAAGGTCGGCACGACACTCGGGTCGCTGATCTTTGGCAGTGGTGATGAGGATGGTGGTGGCCATGGCAGTGCTTGTGATGCTGAAGGTAGTTCAGGTGGTGGCAATGGCGACGGCGAGCAGGAGCTGATGCCGGTCGTGGAGCATGAAGATGGCGGCTCAGGTACACATGTTGGCTCGGCCACTTCAGGCTCTAGTCCGTCTGAGGAAGAAGAACAAAGTGAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAAGGACTGAATCAAAAGATAAAAGAGAAGCTAACAGGAGGGAAGCATAGAGAGGAGCAACCTCAAGCTTCTTCCCCTCCGACCACCACCGCAACTACAACCGCCTCTCCGATCACCACAAACAAAATTCACTATGGGGAACCCGCTCATAATATTCTCTGA

Homology

[Close]

BLAST of CmoCh19G006930.1 vs. Swiss-Prot
Match: ECP40_DAUCA (Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-11
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDEDGGGH 68
           MAD++DE GNPIQL D+HGNPV LTDE+GNPV ++G+AT   TT        G  D G  
Sbjct: 1   MADLRDEKGNPIQLTDQHGNPVQLTDEYGNPVHITGVATTGATT--------GHHDHGVG 60

Query: 69  GSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPS 115
           G++    GS+G G   G   L           G+H G+ T G  P+
Sbjct: 61  GASHGGVGSTGLGGVAGAAGLAGATAAAATHGGSHGGTGTHGVGPT 98

[Close]

BLAST of CmoCh19G006930.1 vs. Swiss-Prot
Match: DHLE_RAPSA (Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 59/166 (35.54%), Postives = 88/166 (53.01%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKV----GTTLGSLIFGSGDED 68
           MAD++DE GNPI L D +GNPV L+DE GNP+ ++G+A+       +  G++     +  
Sbjct: 1   MADLKDERGNPIHLTDAYGNPVQLSDEFGNPMHITGVASSAPQYKDSVTGNIAEYPTEAP 60

Query: 69  GGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHV-GSATSGSSPSEEEEQSEKR 128
             G  +   A  ++  G    E       +   G  G H+  S +S SS SE++ Q  +R
Sbjct: 61  PAGVAAGTGAAATTAAGVTTSE---TTTGQEHHGSLGEHLRRSGSSSSSSSEDDGQGGRR 120

Query: 129 KKKKKKKKGLNQKIKEKLTGGKHREEQPQASSP---PTTTATTTAS 167
                 KK +  KIK+KL GGKH++EQ   ++    PTTT TTT +
Sbjct: 121 ------KKSIKDKIKDKLGGGKHKDEQTPTTATTTGPTTTTTTTGA 157

[Close]

BLAST of CmoCh19G006930.1 vs. Swiss-Prot
Match: DHLEA_ARATH (Probable dehydrin LEA OS=Arabidopsis thaliana GN=LEA PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.0e-09
Identity = 67/184 (36.41%), Postives = 91/184 (49.46%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVV-LTDEHGNPVRLSGIATKVG---------------TT 68
           MAD++DE GNPI L D  GNP+V LTDEHGNP+ L+G+ +                  +T
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTST 60

Query: 69  LGSLIFGSGDEDGGGHGSACDAEGSSGGGNGD--GEQELMPVVEHEDGGSGTHVGSATSG 128
           +G     +    G G  +A  A G S G      G+Q    + EH          S +S 
Sbjct: 61  VGET-HPAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRR-------SGSSS 120

Query: 129 SSPSEEEEQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTTATTTASPITT 175
           SS SE++ Q        ++KK + +KIKEK   GKH++EQ  A      TATTT  P TT
Sbjct: 121 SSSSEDDGQGG------RRKKSIKEKIKEKFGSGKHKDEQTPA------TATTT-GPATT 163

[Close]

BLAST of CmoCh19G006930.1 vs. TrEMBL
Match: V9M5C3_MANES (Dehydrin protein OS=Manihot esculenta GN=LTI30 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 76/156 (48.72%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDEDG--- 68
           MAD++DEYGNPIQL DEHGNPV LTDEHGNPV ++G+AT    TLG+L+       G   
Sbjct: 1   MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGVATSKPPTLGTLMENEVPATGLLA 60

Query: 69  GGHGSACDAEGSSGGGNGDGEQELMPVVE-HEDGGSGTHVGSATSGSSPSEEEEQSEKRK 128
             +G+   ++G +G      ++E  P  +  E  GSG    S+TS SS SE++ Q  +RK
Sbjct: 61  SSNGTDHTSKGHAGDEENHRKEEPQPQPQPQEQQGSGEIERSSTSSSSSSEDDGQGGRRK 120

Query: 129 KKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTT 161
           KK     GL +KIKEKLTGGKH+EEQ   +S  T T
Sbjct: 121 KK-----GLREKIKEKLTGGKHKEEQRHKASVSTET 151

[Close]

BLAST of CmoCh19G006930.1 vs. TrEMBL
Match: G4XR61_9ROSI (Dehydrin 4 OS=Vitis yeshanensis PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.3e-17
Identity = 79/190 (41.58%), Postives = 101/190 (53.16%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIAT--KVGTTLGSLI--------- 68
           MAD++DE+GNPIQL D+HGNPV LTDEHGNP+ L+G+A+   + TT  + +         
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTTTAAPVHDADALKTT 60

Query: 69  -------FGSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSG 128
                  FG G  D   HG A  A   + GG G        VV HE   S       +S 
Sbjct: 61  GESHPPTFGHGTADQAMHGGAPVAAEPAEGGGG--------VVHHEKRES-------SSS 120

Query: 129 SSPSEEEEQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQ---PQASSPPTTTATTTASP 178
           SS SE++ Q  +R      KKGL +KIKEKLTGGKH+EEQ   P      TTT TT ++ 
Sbjct: 121 SSSSEDDGQGGRR------KKGLKEKIKEKLTGGKHKEEQGHAPTTGVAITTTTTTGSAT 169

[Close]

BLAST of CmoCh19G006930.1 vs. TrEMBL
Match: A0A0D2VZT1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G154800 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 76/166 (45.78%), Postives = 99/166 (59.64%), Query Frame = 1


Query: 4   MRMAKMADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDE 63
           +R+ KMAD++DE+GNPIQL DEHGNPV LTDEHGNP+ ++GIATK  TT  SL   SG  
Sbjct: 15  LRIRKMADLRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGIATKHPTTTTSL---SGLM 74

Query: 64  DGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEEEQSEKR 123
            G G GSA   + S         Q+  P+     G       S++S SS S E++    R
Sbjct: 75  -GYGTGSAVATDQSQQQLQPPPPQQTQPLHYEVSGKEKIQRSSSSSSSSSSSEDDGMGGR 134

Query: 124 KKKKKKKKGLNQKIKEKLTGGKHREE---QPQASSPPTTTATTTAS 167
           +K     KGL +K+KEKLT GK +EE   Q + S+  TT +TTT +
Sbjct: 135 RK-----KGLKEKVKEKLTSGKKKEEDQSQTKTSAVKTTASTTTTT 171

[Close]

BLAST of CmoCh19G006930.1 vs. TrEMBL
Match: B9RH90_RICCO (Late embryogenesis abundant protein, putative OS=Ricinus communis GN=RCOM_1448770 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-16
Identity = 76/177 (42.94%), Postives = 97/177 (54.80%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATK----VGTTL-------GSLI 68
           MADI+DE+GNP+QL DEHGNPV LTDE G PV L+G AT       TT+         L+
Sbjct: 1   MADIRDEFGNPVQLTDEHGNPVQLTDEQGKPVHLTGFATTEPPIASTTVVQSEVPPTGLL 60

Query: 69  FGSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEE 128
             SG E+     +     G  G     G+++     E  D GS     S++S SS SE++
Sbjct: 61  ASSGKEEVTESRTTAPIAGEHGAA---GDEDKYKKEEKMDEGSKDVQRSSSSSSSSSEDD 120

Query: 129 EQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTTATTTASPITTNKIH 175
            Q  +RKKK     GL +KIKEKLTGGKH+EE  Q  S  TT  TT  +P   ++ H
Sbjct: 121 GQGGRRKKK-----GLKEKIKEKLTGGKHKEEHGQTESVSTT--TTATAPAEAHQAH 167

[Close]

BLAST of CmoCh19G006930.1 vs. TrEMBL
Match: E7BXD8_JATCU (Dehydrin OS=Jatropha curcas GN=DHN-1 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-16
Identity = 67/151 (44.37%), Postives = 92/151 (60.93%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDEDGGGH 68
           MAD++DEYGNPI+L DEHGNPV LTDEHGNPV ++G+AT    T+ +++     + G   
Sbjct: 1   MADLRDEYGNPIRLTDEHGNPVELTDEHGNPVHITGLATSKPATIANVLQIDVPDTGLLA 60

Query: 69  GSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEEEQSEKRKKKKK 128
            +    +G +G   G  E E +   + +         S++S SS SE++EQ  +RKKK  
Sbjct: 61  STEEPPKGHTGEHVGGAEPEPVKAEQPQQQQQELERSSSSSSSS-SEDDEQGGRRKKK-- 120

Query: 129 KKKGLNQKIKEKLTGGKHREEQPQASSPPTT 160
              GL +KIKEKLTGGKH+EE  Q +   TT
Sbjct: 121 ---GLKEKIKEKLTGGKHKEEHKQTAITETT 145

[Close]

BLAST of CmoCh19G006930.1 vs. TAIR10
Match: AT2G21490.1 (AT2G21490.1 dehydrin LEA)

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-10
Identity = 67/184 (36.41%), Postives = 91/184 (49.46%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVV-LTDEHGNPVRLSGIATKVG---------------TT 68
           MAD++DE GNPI L D  GNP+V LTDEHGNP+ L+G+ +                  +T
Sbjct: 1   MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTST 60

Query: 69  LGSLIFGSGDEDGGGHGSACDAEGSSGGGNGD--GEQELMPVVEHEDGGSGTHVGSATSG 128
           +G     +    G G  +A  A G S G      G+Q    + EH          S +S 
Sbjct: 61  VGET-HPAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRR-------SGSSS 120

Query: 129 SSPSEEEEQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTTATTTASPITT 175
           SS SE++ Q        ++KK + +KIKEK   GKH++EQ  A      TATTT  P TT
Sbjct: 121 SSSSEDDGQGG------RRKKSIKEKIKEKFGSGKHKDEQTPA------TATTT-GPATT 163

[Close]

BLAST of CmoCh19G006930.1 vs. TAIR10
Match: AT4G39130.1 (AT4G39130.1 Dehydrin family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1


Query: 9  MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKV 50
          MAD++DE GNPI L D HG P  L DE GN + L+G+AT V
Sbjct: 1  MADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHLTGVATTV 41

[Close]

BLAST of CmoCh19G006930.1 vs. NCBI nr
Match: gi|442022395|gb|AGC51773.1| (dehydrin protein [Manihot esculenta])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 76/156 (48.72%), Postives = 98/156 (62.82%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDEDG--- 68
           MAD++DEYGNPIQL DEHGNPV LTDEHGNPV ++G+AT    TLG+L+       G   
Sbjct: 1   MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGVATSKPPTLGTLMENEVPATGLLA 60

Query: 69  GGHGSACDAEGSSGGGNGDGEQELMPVVE-HEDGGSGTHVGSATSGSSPSEEEEQSEKRK 128
             +G+   ++G +G      ++E  P  +  E  GSG    S+TS SS SE++ Q  +RK
Sbjct: 61  SSNGTDHTSKGHAGDEENHRKEEPQPQPQPQEQQGSGEIERSSTSSSSSSEDDGQGGRRK 120

Query: 129 KKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTT 161
           KK     GL +KIKEKLTGGKH+EEQ   +S  T T
Sbjct: 121 KK-----GLREKIKEKLTGGKHKEEQRHKASVSTET 151

[Close]

BLAST of CmoCh19G006930.1 vs. NCBI nr
Match: gi|349844874|gb|AEQ19906.1| (dehydrin 4 [Vitis yeshanensis])

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 79/190 (41.58%), Postives = 101/190 (53.16%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIAT--KVGTTLGSLI--------- 68
           MAD++DE+GNPIQL D+HGNPV LTDEHGNP+ L+G+A+   + TT  + +         
Sbjct: 1   MADLRDEHGNPIQLTDQHGNPVQLTDEHGNPMHLTGVASTHPITTTTAAPVHDADALKTT 60

Query: 69  -------FGSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSG 128
                  FG G  D   HG A  A   + GG G        VV HE   S       +S 
Sbjct: 61  GESHPPTFGHGTADQAMHGGAPVAAEPAEGGGG--------VVHHEKRES-------SSS 120

Query: 129 SSPSEEEEQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQ---PQASSPPTTTATTTASP 178
           SS SE++ Q  +R      KKGL +KIKEKLTGGKH+EEQ   P      TTT TT ++ 
Sbjct: 121 SSSSEDDGQGGRR------KKGLKEKIKEKLTGGKHKEEQGHAPTTGVAITTTTTTGSAT 169

[Close]

BLAST of CmoCh19G006930.1 vs. NCBI nr
Match: gi|763810848|gb|KJB77750.1| (hypothetical protein B456_012G154800 [Gossypium raimondii])

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-16
Identity = 76/166 (45.78%), Postives = 99/166 (59.64%), Query Frame = 1


Query: 4   MRMAKMADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDE 63
           +R+ KMAD++DE+GNPIQL DEHGNPV LTDEHGNP+ ++GIATK  TT  SL   SG  
Sbjct: 15  LRIRKMADLRDEHGNPIQLTDEHGNPVQLTDEHGNPIYVTGIATKHPTTTTSL---SGLM 74

Query: 64  DGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEEEQSEKR 123
            G G GSA   + S         Q+  P+     G       S++S SS S E++    R
Sbjct: 75  -GYGTGSAVATDQSQQQLQPPPPQQTQPLHYEVSGKEKIQRSSSSSSSSSSSEDDGMGGR 134

Query: 124 KKKKKKKKGLNQKIKEKLTGGKHREE---QPQASSPPTTTATTTAS 167
           +K     KGL +K+KEKLT GK +EE   Q + S+  TT +TTT +
Sbjct: 135 RK-----KGLKEKVKEKLTSGKKKEEDQSQTKTSAVKTTASTTTTT 171

[Close]

BLAST of CmoCh19G006930.1 vs. NCBI nr
Match: gi|255543773|ref|XP_002512949.1| (PREDICTED: embryogenic cell protein 40 [Ricinus communis])

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 76/177 (42.94%), Postives = 97/177 (54.80%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATK----VGTTL-------GSLI 68
           MADI+DE+GNP+QL DEHGNPV LTDE G PV L+G AT       TT+         L+
Sbjct: 1   MADIRDEFGNPVQLTDEHGNPVQLTDEQGKPVHLTGFATTEPPIASTTVVQSEVPPTGLL 60

Query: 69  FGSGDEDGGGHGSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEE 128
             SG E+     +     G  G     G+++     E  D GS     S++S SS SE++
Sbjct: 61  ASSGKEEVTESRTTAPIAGEHGAA---GDEDKYKKEEKMDEGSKDVQRSSSSSSSSSEDD 120

Query: 129 EQSEKRKKKKKKKKGLNQKIKEKLTGGKHREEQPQASSPPTTTATTTASPITTNKIH 175
            Q  +RKKK     GL +KIKEKLTGGKH+EE  Q  S  TT  TT  +P   ++ H
Sbjct: 121 GQGGRRKKK-----GLKEKIKEKLTGGKHKEEHGQTESVSTT--TTATAPAEAHQAH 167

[Close]

BLAST of CmoCh19G006930.1 vs. NCBI nr
Match: gi|821324906|ref|NP_001295705.1| (embryogenic cell protein 40-like [Jatropha curcas])

HSP 1 Score: 93.6 bits (231), Expect = 3.9e-16
Identity = 67/151 (44.37%), Postives = 92/151 (60.93%), Query Frame = 1


Query: 9   MADIQDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDEDGGGH 68
           MAD++DEYGNPI+L DEHGNPV LTDEHGNPV ++G+AT    T+ +++     + G   
Sbjct: 1   MADLRDEYGNPIRLTDEHGNPVELTDEHGNPVHITGLATSKPATIANVLQIDVPDTGLLA 60

Query: 69  GSACDAEGSSGGGNGDGEQELMPVVEHEDGGSGTHVGSATSGSSPSEEEEQSEKRKKKKK 128
            +    +G +G   G  E E +   + +         S++S SS SE++EQ  +RKKK  
Sbjct: 61  STEEPPKGHTGEHVGGAEPEPVKAEQPQQQQQELERSSSSSSSS-SEDDEQGGRRKKK-- 120

Query: 129 KKKGLNQKIKEKLTGGKHREEQPQASSPPTT 160
              GL +KIKEKLTGGKH+EE  Q +   TT
Sbjct: 121 ---GLKEKIKEKLTGGKHKEEHKQTAITETT 145

The following BLAST results are available for this feature:

BLAST of CmoCh19G006930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ECP40_DAUCA	4.9e-11	43.40	Embryogenic cell protein 40 OS=Daucus carota GN=ECP40 PE=1 SV=1	[more]
DHLE_RAPSA	2.4e-10	35.54	Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1	[more]
DHLEA_ARATH	6.0e-09	36.41	Probable dehydrin LEA OS=Arabidopsis thaliana GN=LEA PE=2 SV=1	[more]

BLAST of CmoCh19G006930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V9M5C3_MANES	1.1e-20	48.72	Dehydrin protein OS=Manihot esculenta GN=LTI30 PE=2 SV=1	[more]
G4XR61_9ROSI	9.3e-17	41.58	Dehydrin 4 OS=Vitis yeshanensis PE=2 SV=1	[more]
A0A0D2VZT1_GOSRA	1.6e-16	45.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G154800 PE=3 SV=1	[more]
B9RH90_RICCO	2.1e-16	42.94	Late embryogenesis abundant protein, putative OS=Ricinus communis GN=RCOM_144877...	[more]
E7BXD8_JATCU	2.7e-16	44.37	Dehydrin OS=Jatropha curcas GN=DHN-1 PE=2 SV=1	[more]

BLAST of CmoCh19G006930.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21490.1	3.4e-10	36.41	dehydrin LEA	[more]
AT4G39130.1	1.2e-07	58.54	Dehydrin family protein	[more]

BLAST of CmoCh19G006930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|442022395\|gb\|AGC51773.1\|	1.5e-20	48.72	dehydrin protein [Manihot esculenta]	[more]
gi\|349844874\|gb\|AEQ19906.1\|	1.3e-16	41.58	dehydrin 4 [Vitis yeshanensis]	[more]
gi\|763810848\|gb\|KJB77750.1\|	2.3e-16	45.78	hypothetical protein B456_012G154800 [Gossypium raimondii]	[more]
gi\|255543773\|ref\|XP_002512949.1\|	3.0e-16	42.94	PREDICTED: embryogenic cell protein 40 [Ricinus communis]	[more]
gi\|821324906\|ref\|NP_001295705.1\|	3.9e-16	44.37	embryogenic cell protein 40-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000167	Dehydrin

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress
GO:0009415	response to water

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0009415	response to water
biological_process	GO:0016114	terpenoid biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G006930	CmoCh19G006930	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006930.1	CmoCh19G006930.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006930.1.exon.2	CmoCh19G006930.1.exon.2	exon
CmoCh19G006930.1.exon.1	CmoCh19G006930.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006930.1.CDS.1	CmoCh19G006930.1.CDS.1	CDS
CmoCh19G006930.1.CDS.2	CmoCh19G006930.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G006930.1.three_prime_UTR.1	CmoCh19G006930.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 20..165 score: 6.2
None	No IPR available	unknown	Coil	Coil	coord: 116..136 scor
None	No IPR available	PANTHER	PTHR33346	FAMILY NOT NAMED	coord: 9..177 score: 1.0