CmoCh19G005200.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G005200.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Sphingolipid transporter spinster-like protein, putative
Location	Cmo_Chr19 : 6111332 .. 6113264 (+)
Sequence length	441

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAAGTAAGATTATTTTTATTGGTTATTATGTAATGTTACAAGAGTATCTACTAGCCGACCTGACGTGTTATACCACCCGATGTTAGATAAGTATTCATTAGGGTAAGAAGGGAATTGACTGAAGGTATATAAAGGCCGAGCTGTCAACGGGGCAGGTCAGGTCACTAATTTTAGATGAGTATTTATTAGCGTAAGAAGGAGATTGAGCGAAAGTATATAAAGACTGAGATGTTAATGGAGCAGGACCACTATGATTTTTTATCTTTTTAATCTTTCTAAAAAAGATTAAAATTTTTACCCTTTCTTTAAATTATTTATCTCAATTCACAATTGACATTTTAGAACATTTTTTTTACATAAATGTGCTGATATGATTTTTGGAGGATTAACGTGGGTAATTATTGAAACAATTGGATTACCAAGGCACCACTATTTGATTTCAAGGTAATTTTATTTATTATTCGAACAAGTTATTTCTTCAATTATCCTTAATGATATATTTGAATAATGTAATTACTTCTTACATTTCAATTGTAGCTCTCTTTTGATACAACATTTATTGGAGTAGCGTTTTGATTTGGTGCATTTTGCTTCAAAAACATGTACGACTTCCTAGTTTTTTTCTCATTTGGCGAGCTGCTACTGTTTGACACACACGTATACTATTCTTTTATACAAAGTTATAGCCTACTTCTATCTGACGTGACATTAGTAAAGACATAGTCATCGATATTCATCTAAGGATAAAAAGGAGATCGACATTACGGAGTATAAAGACCTAGCCAATTATAAACTTCACTAGGGAGTCAAATTAAGAAAGTTAGAATGTCATGTAATTTTGGATGCATAGTCGACCAAACCCAAAAGCCTGAGCTAATGTGTTAGTCTATATTTAATATTTTTGTATCGATTCTTTAGCTAATTACTTCTCTGATCGCAGGGTCCGATAAACTTCGTGTGCCTACATTGCATGATGCCTAGTCTAAGGCCGCTTTCTATGGCTATGTTCACAGTTCCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACACCTAGTCTAAGGCCTCTTTCTATCGCTATGTCCACAGTTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGTTAGTTGTTTAGAAGTTAAGTCTATTCTATATGTTTTTAGTTAAAAGTTTTAACAATGTTTTATTAACTCATATTAATGATTGTGTAGGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTGTATGGTCAATAGATAAACGTTAGGACACATGGACATATGACAACACGAACACATAATTTCTAAAAAGTAGGCCACAACATGTTAGAGACGATATCTAAGGTTAAACATCGAATGAGAATACTGTTCATTCTTTGCATTAAATTAATTTGTTGACCTATGCTCCGGTGGGCATTAGCTTTGCTTTTTATGGATATCGATGAGTTGTTTTCTTCCCATTTTTAAAAATATGTCATAACTAGATCGAATGCTTGCTCATGCAAATCCATGTTGAAATCGATATTATGTTTGAGTATCTATCTCTATTAGAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG

mRNA sequence

ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAATTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG

Coding sequence (CDS)

ATGGATAGAGAGGTCAATGCTGCCATTGCGAGCATGAATTGGATTCAGAAAAGTTGTCGTGTTGATGATACATGCACATTTGGTTCTGGAATAAATTGCAATTCACATCTCCCGATAAACTTCGTGTGCCTACATTGCGTGACGCCTAGTCTAAGGCCGCTTTCTATGTCTATGTCCACAATTGCAATTCAGATTTTTGGAGATGTGCCATCTTCGAATCTTGTTGGAGTTGTCGAAGACCATTTTAACCGGGAACACTTCTCTCATTCCTACCGGATGCTATTAAGAGAAGAAAGGTCAATAATTATTATGACACGTTTTTTCTCAAGAATATTTCTTTTTGACGATGTAGAGGAAAAGGATTTGCAACGATCGAGTGCAAAACCTTCATTTGAAAACAAAGAAATTATCACAAACAAACTGAGGTTTGCAAAAGTTTAG

Homology

[Close]

BLAST of CmoCh19G005200.1 vs. Swiss-Prot
Match: SPNS3_ARATH (Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

[Close]

BLAST of CmoCh19G005200.1 vs. Swiss-Prot
Match: SPNS2_ARATH (Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NF+ LHCV PSLRPL+M+MST++I IFGDVPSS LVGV++D+ N
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVN 430

[Close]

BLAST of CmoCh19G005200.1 vs. Swiss-Prot
Match: SPNS1_ARATH (Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-11
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDH 82
           P+NFVCLHCV P+LRPLSM+ ST+ I I GDVPSS L G ++DH
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQDH 434

[Close]

BLAST of CmoCh19G005200.1 vs. TrEMBL
Match: G7JTZ9_MEDTR (Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula GN=MTR_4g092770 PE=4 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NFVCLHCV PSLRPLSM+MST+AI IFGDVPS+ LVGVV+DH N
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSAPLVGVVQDHIN 465

[Close]

BLAST of CmoCh19G005200.1 vs. TrEMBL
Match: D7LE31_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_320107 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 409 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 454

[Close]

BLAST of CmoCh19G005200.1 vs. TrEMBL
Match: R0G1Z9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025591mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 395 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 440

[Close]

BLAST of CmoCh19G005200.1 vs. TrEMBL
Match: D7SSI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0205g00120 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM+MST+AI IFGDVPSS LVG+++DH N
Sbjct: 424 PVNYVCLHCVRPSLRPLSMAMSTVAIHIFGDVPSSPLVGILQDHVN 469

[Close]

BLAST of CmoCh19G005200.1 vs. TrEMBL
Match: A0A061DH97_THECC (Major facilitator superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_000899 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 25  CTFGSGINCNSHLPINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           C  G  +   +  P+N+VCLHCV PSLRPLSM++ST++I IFGDVPSS LVGV++DH N
Sbjct: 296 CKLGELLVFATQAPVNYVCLHCVKPSLRPLSMAISTVSIHIFGDVPSSPLVGVLQDHVN 354

[Close]

BLAST of CmoCh19G005200.1 vs. TAIR10
Match: AT2G22730.1 (AT2G22730.1 Major facilitator superfamily protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-16
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

[Close]

BLAST of CmoCh19G005200.1 vs. TAIR10
Match: AT5G64500.1 (AT5G64500.1 Major facilitator superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 8.9e-14
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NF+ LHCV PSLRPL+M+MST++I IFGDVPSS LVGV++D+ N
Sbjct: 385 PVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQDYVN 430

[Close]

BLAST of CmoCh19G005200.1 vs. TAIR10
Match: AT5G65687.1 (AT5G65687.1 Major facilitator superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.9e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDH 82
           P+NFVCLHCV P+LRPLSM+ ST+ I I GDVPSS L G ++DH
Sbjct: 391 PVNFVCLHCVRPNLRPLSMASSTVLIHILGDVPSSPLYGKMQDH 434

[Close]

BLAST of CmoCh19G005200.1 vs. NCBI nr
Match: gi|922363434|ref|XP_003608336.2| (sphingolipid transporter spinster-like protein, putative [Medicago truncatula])

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+NFVCLHCV PSLRPLSM+MST+AI IFGDVPS+ LVGVV+DH N
Sbjct: 420 PVNFVCLHCVKPSLRPLSMAMSTVAIHIFGDVPSAPLVGVVQDHIN 465

[Close]

BLAST of CmoCh19G005200.1 vs. NCBI nr
Match: gi|30681799|ref|NP_179858.2| (major facilitator protein [Arabidopsis thaliana])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

[Close]

BLAST of CmoCh19G005200.1 vs. NCBI nr
Match: gi|4314370|gb|AAD15581.1| (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 410 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 455

[Close]

BLAST of CmoCh19G005200.1 vs. NCBI nr
Match: gi|727506178|ref|XP_010429201.1| (PREDICTED: probable sphingolipid transporter spinster homolog 3 isoform X3 [Camelina sativa])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 373 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 418

[Close]

BLAST of CmoCh19G005200.1 vs. NCBI nr
Match: gi|565477545|ref|XP_006296413.1| (hypothetical protein CARUB_v10025591mg [Capsella rubella])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 38  PINFVCLHCVTPSLRPLSMSMSTIAIQIFGDVPSSNLVGVVEDHFN 84
           P+N+VCLHCV PSLRPLSM++ST+AI IFGDVPSS LVG+V+DH N
Sbjct: 395 PVNYVCLHCVKPSLRPLSMAISTVAIHIFGDVPSSPLVGIVQDHIN 440

The following BLAST results are available for this feature:

BLAST of CmoCh19G005200.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPNS3_ARATH	9.9e-15	76.09	Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=...	[more]
SPNS2_ARATH	1.6e-12	69.57	Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=...	[more]
SPNS1_ARATH	5.1e-11	68.18	Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=...	[more]

BLAST of CmoCh19G005200.1 vs. TrEMBL


Match Name	E-value	Identity	Description
G7JTZ9_MEDTR	2.9e-13	80.43	Sphingolipid transporter spinster-like protein, putative OS=Medicago truncatula ...	[more]
D7LE31_ARALL	1.1e-12	76.09	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
R0G1Z9_9BRAS	1.1e-12	76.09	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025591mg PE=4 SV=1	[more]
D7SSI1_VITVI	1.1e-12	76.09	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0205g00120 PE=4 SV=...	[more]
A0A061DH97_THECC	1.9e-12	61.02	Major facilitator superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_000899...	[more]

BLAST of CmoCh19G005200.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22730.1	5.6e-16	76.09	Major facilitator superfamily protein	[more]
AT5G64500.1	8.9e-14	69.57	Major facilitator superfamily protein	[more]
AT5G65687.1	2.9e-12	68.18	Major facilitator superfamily protein	[more]

BLAST of CmoCh19G005200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922363434\|ref\|XP_003608336.2\|	4.2e-13	80.43	sphingolipid transporter spinster-like protein, putative [Medicago truncatula]	[more]
gi\|30681799\|ref\|NP_179858.2\|	1.6e-12	76.09	major facilitator protein [Arabidopsis thaliana]	[more]
gi\|4314370\|gb\|AAD15581.1\|	1.6e-12	76.09	hypothetical protein [Arabidopsis thaliana]	[more]
gi\|727506178\|ref\|XP_010429201.1\|	1.6e-12	76.09	PREDICTED: probable sphingolipid transporter spinster homolog 3 isoform X3 [Came...	[more]
gi\|565477545\|ref\|XP_006296413.1\|	1.6e-12	76.09	hypothetical protein CARUB_v10025591mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G005200	CmoCh19G005200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G005200.1	CmoCh19G005200.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G005200.1.exon.1	CmoCh19G005200.1.exon.1	exon
CmoCh19G005200.1.exon.2	CmoCh19G005200.1.exon.2	exon
CmoCh19G005200.1.exon.3	CmoCh19G005200.1.exon.3	exon
CmoCh19G005200.1.exon.4	CmoCh19G005200.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G005200.1.CDS.1	CmoCh19G005200.1.CDS.1	CDS
CmoCh19G005200.1.CDS.2	CmoCh19G005200.1.CDS.2	CDS
CmoCh19G005200.1.CDS.3	CmoCh19G005200.1.CDS.3	CDS
CmoCh19G005200.1.CDS.4	CmoCh19G005200.1.CDS.4	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23505	FAMILY NOT NAMED	coord: 38..121 score: 2.7
None	No IPR available	PANTHER	PTHR23505:SF17	SUBFAMILY NOT NAMED	coord: 38..121 score: 2.7